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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0036700 |
| Transcript ID | LotjaGi6g1v0036700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G39980.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic; TrEMBL-Plants: tr|I1LN12|I1LN12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0036700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7294478..7296448) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTTTCTTCCTCTTCATTCCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAACCACCTTCACCATAACCACAAA CCCGAGCTCTATTGCCTCAACAACCGTAGCAGCTACAGTCAAAGATGTCTGGACCCGAACAACACCATCGCCATATCACC GCCGTACCAGAACCCAACAGCAAATGTTCCTAGACCACAGCATCGACATGGATGAACTACTAGCCTCAATCAGCTCCACC CAGAACGAGCAAGAGCTTCACGCTGTGATGTCGCTCTACAACCAGAGACAGCTTTCCATTCGCTTCATGGTTTCCCTCCT CTCCCGCGAAACCGATTGGCAGCGCGCATTGGCTTTGCTCGATTGGATCAATGAAAAGGCTCTTTACTCGCCCTCGGTGT TCGCCTACAATGTTGTTCTTCGCAATGTGCTGCGAGCGAAGCAGTGGCACCTTGCACACGGACTGTTTGATGAAATGCGC CAGAGAGGACTTGCCCCTGATAGGTACACTTACTCCACGCTCATTACCCATTTTGGGAAACATGGCTTGCTTGATTCCTC TTTGTTCTGGCTGCAGCAGATGGAGCAAGACAATGTGTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGC GCAAGCTGGGTGATTATTCCAAGGCGATTTCCATTTTTGCCAGGTTGAAAGCGTCGTCTATTGCCCCTGACCTCATTGCT TATAACTCTATGATTAATGTGTTTGGAAAGGCTAAGCTCTTCCGTGAGGCTCGTCTTCTTCTACAAGAGATGAGGGACAA CGGTGTTTGCCCTGACACAGTTAGCTACTCTACGCTTCTTGCCATTTATGTAGACAATGAGAGGTTTGTTGAGGCGCTTT CTGTTTTCTCTGAAATGAATGATGCCAAATGCCCGCTTGATCTCACCACTTGCAATATTATGATTGATGTTTATGGTCAG CTTCACATGGTCGAGGAAGGCGACCGCCTGTTCTGGAGCATGAGGAAGATGGGGATTGAACCCAATGTTGTTAGTTATAA TACGCTCTTGAGGGTTTATGGAGAGTCTGAGCTGTTCGGGGAAGCTATCCATCTGTTTCGTTTGATGCAGAAGAAGGGTG TGCAACAGAATGTTGTCACCTACAATACTATGATTAATATTTACGGCAAGTCTCTTGAGCATGAGAAGGCTACAAATCTC ATTCAAGAAATGCAGAATAATGGTATTCAACCAAATGCTATCACCTATTCAACTATAATATCTATCTGGGAGAAGGCAGG GAAACTGGACAGGGCAGCCATGTTGTTTCAGAAATTGAGGAGTTCAGGTGTTCAAATTGATCAGGTTCTGTACCAGACAA TGATTGTAGCCTATGAGAGGGCAGGTTTGGTTGCTCATGCTAAGCGCCTTCTTCATGAGCTCAAGCGACCTGACAACATT CCCAGGGAAACTGCAATCATGGTGCTTGCTCGAGCCAGGAGAGTTGTAGAGGCTACATGGGTTTTTCGGCAGGCTTTTGC TGCTGGAGAGGTAAACGATATATCTGTGTTTGGGTGCATGATTAATCTTTACTCGAGGAACAAAAAGTACACAAATGTAG TTGAGGTGTTTGAGAAGATGAGAGAAGTTGGATACTTTCCTGATTCCAATGTTATTGCCCTCGTGCTGAATGCTTTTGGG AAGCTACGTGAGTTTGAGAAAGCAGATGCTTTATACAGTCAAATGCATGACGAAGGATGTGTTTTTCCAGATGAGGTTCA TTTCCAGATGCTTAGTCTATATGGTGCAAGAAAGGATTTCACAATGGTGGAGTCATTGTTTGAGAAGCTGGATTCCAATC CCAATATCAACAAGAAGGAGTTGCATCTTGTTGTTTCCGGCATTTATGAAAGAGCAGATAGACTTAATGATGCTTCTCGA ATCATGAACAGGATGAATCACAAAGCAATCGGAAATCATGATCATGCTTAG
CDS sequence (LotjaGi6g1v0036700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTAGACCACAGCATCGACATGGATGAACTACTAGCCTCAATCAGCTCCACCCAGAACGAGCAAGAGCTTCACGC TGTGATGTCGCTCTACAACCAGAGACAGCTTTCCATTCGCTTCATGGTTTCCCTCCTCTCCCGCGAAACCGATTGGCAGC GCGCATTGGCTTTGCTCGATTGGATCAATGAAAAGGCTCTTTACTCGCCCTCGGTGTTCGCCTACAATGTTGTTCTTCGC AATGTGCTGCGAGCGAAGCAGTGGCACCTTGCACACGGACTGTTTGATGAAATGCGCCAGAGAGGACTTGCCCCTGATAG GTACACTTACTCCACGCTCATTACCCATTTTGGGAAACATGGCTTGCTTGATTCCTCTTTGTTCTGGCTGCAGCAGATGG AGCAAGACAATGTGTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGCAAGCTGGGTGATTATTCCAAG GCGATTTCCATTTTTGCCAGGTTGAAAGCGTCGTCTATTGCCCCTGACCTCATTGCTTATAACTCTATGATTAATGTGTT TGGAAAGGCTAAGCTCTTCCGTGAGGCTCGTCTTCTTCTACAAGAGATGAGGGACAACGGTGTTTGCCCTGACACAGTTA GCTACTCTACGCTTCTTGCCATTTATGTAGACAATGAGAGGTTTGTTGAGGCGCTTTCTGTTTTCTCTGAAATGAATGAT GCCAAATGCCCGCTTGATCTCACCACTTGCAATATTATGATTGATGTTTATGGTCAGCTTCACATGGTCGAGGAAGGCGA CCGCCTGTTCTGGAGCATGAGGAAGATGGGGATTGAACCCAATGTTGTTAGTTATAATACGCTCTTGAGGGTTTATGGAG AGTCTGAGCTGTTCGGGGAAGCTATCCATCTGTTTCGTTTGATGCAGAAGAAGGGTGTGCAACAGAATGTTGTCACCTAC AATACTATGATTAATATTTACGGCAAGTCTCTTGAGCATGAGAAGGCTACAAATCTCATTCAAGAAATGCAGAATAATGG TATTCAACCAAATGCTATCACCTATTCAACTATAATATCTATCTGGGAGAAGGCAGGGAAACTGGACAGGGCAGCCATGT TGTTTCAGAAATTGAGGAGTTCAGGTGTTCAAATTGATCAGGTTCTGTACCAGACAATGATTGTAGCCTATGAGAGGGCA GGTTTGGTTGCTCATGCTAAGCGCCTTCTTCATGAGCTCAAGCGACCTGACAACATTCCCAGGGAAACTGCAATCATGGT GCTTGCTCGAGCCAGGAGAGTTGTAGAGGCTACATGGGTTTTTCGGCAGGCTTTTGCTGCTGGAGAGGTAAACGATATAT CTGTGTTTGGGTGCATGATTAATCTTTACTCGAGGAACAAAAAGTACACAAATGTAGTTGAGGTGTTTGAGAAGATGAGA GAAGTTGGATACTTTCCTGATTCCAATGTTATTGCCCTCGTGCTGAATGCTTTTGGGAAGCTACGTGAGTTTGAGAAAGC AGATGCTTTATACAGTCAAATGCATGACGAAGGATGTGTTTTTCCAGATGAGGTTCATTTCCAGATGCTTAGTCTATATG GTGCAAGAAAGGATTTCACAATGGTGGAGTCATTGTTTGAGAAGCTGGATTCCAATCCCAATATCAACAAGAAGGAGTTG CATCTTGTTGTTTCCGGCATTTATGAAAGAGCAGATAGACTTAATGATGCTTCTCGAATCATGAACAGGATGAATCACAA AGCAATCGGAAATCATGATCATGCTTAG
Protein sequence (LotjaGi6g1v0036700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLDHSIDMDELLASISSTQNEQELHAVMSLYNQRQLSIRFMVSLLSRETDWQRALALLDWINEKALYSPSVFAYNVVLR NVLRAKQWHLAHGLFDEMRQRGLAPDRYTYSTLITHFGKHGLLDSSLFWLQQMEQDNVSGDLVLYSNLIELSRKLGDYSK AISIFARLKASSIAPDLIAYNSMINVFGKAKLFREARLLLQEMRDNGVCPDTVSYSTLLAIYVDNERFVEALSVFSEMND AKCPLDLTTCNIMIDVYGQLHMVEEGDRLFWSMRKMGIEPNVVSYNTLLRVYGESELFGEAIHLFRLMQKKGVQQNVVTY NTMINIYGKSLEHEKATNLIQEMQNNGIQPNAITYSTIISIWEKAGKLDRAAMLFQKLRSSGVQIDQVLYQTMIVAYERA GLVAHAKRLLHELKRPDNIPRETAIMVLARARRVVEATWVFRQAFAAGEVNDISVFGCMINLYSRNKKYTNVVEVFEKMR EVGYFPDSNVIALVLNAFGKLREFEKADALYSQMHDEGCVFPDEVHFQMLSLYGARKDFTMVESLFEKLDSNPNINKKEL HLVVSGIYERADRLNDASRIMNRMNHKAIGNHDHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 150 | 141 | 1.6E-25 | ||
| ProSiteProfiles | 35 | 69 | 35 | 5.119 | ||
| PANTHER | 45 | 165 | 121 | 1.5E-96 | – | |
| Pfam | 70 | 117 | 48 | 9.8E-13 | ||
| ProSiteProfiles | 71 | 105 | 35 | 10.885 | ||
| TIGRFAM | 74 | 106 | 33 | 6.1E-6 | ||
| ProSiteProfiles | 106 | 140 | 35 | 9.032 | ||
| SUPERFAMILY | 130 | 391 | 262 | 5.23E-6 | – | |
| PANTHER | 141 | 274 | 134 | 1.5E-96 | – | |
| ProSiteProfiles | 141 | 175 | 35 | 9.01 | ||
| Pfam | 143 | 171 | 29 | 1.3 | ||
| Gene3D | 151 | 257 | 107 | 3.1E-29 | ||
| Pfam | 175 | 219 | 45 | 7.2E-11 | ||
| ProSiteProfiles | 176 | 210 | 35 | 12.178 | ||
| TIGRFAM | 179 | 212 | 34 | 1.8E-9 | ||
| ProSiteProfiles | 211 | 245 | 35 | 9.997 | ||
| TIGRFAM | 213 | 246 | 34 | 2.7E-5 | ||
| Pfam | 246 | 291 | 46 | 7.6E-10 | ||
| ProSiteProfiles | 246 | 280 | 35 | 11.378 | ||
| TIGRFAM | 249 | 282 | 34 | 6.9E-7 | ||
| PANTHER | 264 | 448 | 185 | 1.5E-96 | – | |
| Gene3D | 270 | 344 | 75 | 2.6E-20 | ||
| ProSiteProfiles | 281 | 315 | 35 | 11.115 | ||
| TIGRFAM | 283 | 316 | 34 | 1.1E-6 | ||
| Pfam | 316 | 359 | 44 | 1.5E-14 | ||
| ProSiteProfiles | 316 | 350 | 35 | 12.178 | ||
| TIGRFAM | 318 | 352 | 35 | 4.8E-8 | ||
| Gene3D | 345 | 416 | 72 | 1.5E-15 | ||
| ProSiteProfiles | 351 | 385 | 35 | 10.249 | ||
| TIGRFAM | 353 | 386 | 34 | 7.0E-4 | ||
| ProSiteProfiles | 386 | 420 | 35 | 8.955 | ||
| Pfam | 388 | 415 | 28 | 0.071 | ||
| Gene3D | 417 | 595 | 179 | 2.4E-20 | ||
| PANTHER | 452 | 587 | 136 | 1.5E-96 | – | |
| ProSiteProfiles | 452 | 486 | 35 | 10.633 | ||
| TIGRFAM | 455 | 487 | 33 | 2.2E-5 | ||
| Pfam | 455 | 483 | 29 | 3.1E-4 | ||
| ProSiteProfiles | 487 | 521 | 35 | 8.638 | ||
| Pfam | 494 | 519 | 26 | 0.022 | ||
| TIGRFAM | 494 | 523 | 30 | 1.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0036700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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