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LotjaGi6g1v0040600.1

Overview

Field Value
Gene ID LotjaGi6g1v0040600
Transcript ID LotjaGi6g1v0040600.1
Lotus japonicus genome version Gifu v1.2
Description Werner Syndrome-like exonuclease; TAIR: AT4G13870.2 Werner syndrome-like exonuclease; Swiss-Prot: sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease; TrEMBL-Plants: tr|I3SIM3|I3SIM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0040600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:7857812..7863977) extracted from Lotus japonicus Gifu genome v1.2.

AACCAAAGGACACGAATATGAAATGTACATGACATTTGAGTAGAGTAGTCTATCGGCATAACCAAACAACACTGGAGTAG AAGAAGAAGAAGTAGCAGTTTGAGTCCGAGTCTGAGATGAAGCGGTTAGGGGAAGAGGAAAAGGAGAGGGAAGAGTTTGG TTTCCCACGACTGGCCTCATTCGTCTGCGAATGCGAGCCTCTCTCTGTCTCAGAGGAAGAACTTCAAGCCATCGAATCCA CATTTCAATCCTCTCATTCCTCCCTCCGCCGCCGCCGCAGCAGCCACCGCCGATTGCCCACATCGCTTCTCGCTCTTCAA CTCCCAACTCTCTCACCTTCTCACTCTCAAGGTCCTTATACATTTCTCTCTCTCTTAGGGTTTCCCCTTTCTCAATTTCG CTCTGAATTCAATGGAAACCCTTAAAATCTATCTTTCTCTTTCTTTTCTGTAAAATGAATTTTGAATAAATTTTAACTGC ATTTCCTCTAATTTTTCTGATCAAACTTTACACAGGCTACTCAAGGATGAGATTGCCAGTAATGAAGTTTAGTGGCCAAA TTACGTATAGCAGGAGTTTTGATGATGTACAGAAGGCTGTAACAAAGCTCTTAGAATTTGTTGAAGAAAAGAAAAGAGCG ATGATGCGAATTGCAATTGGATTTGACATTGAGTGGAGACCCAGCTTCGTAAGAGGTTGAATCAGCTTCTTCTAGTTCTT CTTTTGTTGTTTTTCTTAAAAGCTGATTATTGGGCTATAATATATAATATAGGTGATGTTTTGGATATTAAGATATTTTT GTTGGTTTGACATGCAAACAAGAGTGAAGAAAATTGTGTTCCTGCCTATTTTACCAATTTTTATACAACTAGTTTCGTTT GAAATTAACGTTATATTACACGGTTTAAGCAAGCCCAGATCCTTGCTCAAGTTTCTTGAACTTGGCCATGGACGGTCTGA TGCGGAAGTTCAAACGGACAGTCTAGAAATCCTTGCTCAAGTCTCTATTTTGTGTTACAATATGGATGAAGGTATAGCCT TAAGTGTTTTCAGGGATTAAACTTCCTCACTCTAGTCAATTTTGTGACTCTTTACTTGATAACATAACTTATAGATTATC TTTCCTGTAATAGCTTTGTCTCAACGTCATCTATAAGAGGGATATTTCTTACTTTTTTTAGCAGAAGAAGAGCATTTTCC TTTTGTCCGTATAGAACCACAATCCTTTATAAGCAAATATTTCCATTACTCGAAGTTACTTAAATCATTATTGTCTAAAT CTATAGGTGTTCCTCCTGGGAAAGTAGCAGTAATGCAGATATGTGGTGACACCAGTCATTGTCACGTTCTACATCTAATT CATTCTGGTATCCCCCAGAATCTACAGCTTTTACTTGAAGATCCCACAGTTTTGAAGGTTTTAATTTCTATTGAGCTGGA TTTTATGTTTTTCCCCTTTCAACTTATGAGAACTAATCAATTATCATGAATATTACATCAATACAATTTTGACATCTAAA AGGTTGGAGCTGGGATTGGCAGCGATGCTAGTAAGGTTTTTAGAGACTATAACGTATCTGTCAAAGGTGTGGAAGATCTT TCCTTTCATGCTAATGAAAAGCTAGGTGGAGGTATTAATAAGTGGGGTCTTGCAGCTTTGACTGAAACAGTTTTATCGAA ACAGGTATGTTTTGAGTTCAATTTTCTTATAAATAGAGTAGACACGGTGTTTTCACTGGTCCAGTATTCTTCTGAGTTTC TAACACCTGATGGGTTAATGATAGGCTTGGGCCTAAACCTCCTATTACTAATGTTTATGTGAGGCGCACCAATAGGGGTG GGGTGCACTTAAACCTAGCCAAACAGCATTAGGTTTTTACATTTTTATTATTATATTTTATCCAAACAGCATTGGGTTGT TATATTACTATTATTATATTTATTAGGTTAATTGGTTTAGTGTCAATAGATGTGAGTGTACCTCTATTAGGCAGTTTTTG GGAAAATTAGATGGTGGCTGGTTAGTGGAAACCAGGTGTGATTTTTCTCAAGAACAATTGTTTTTCTCATAATAAAACGA TTTCTCAGTCTCTATACAGAACAGAGTTGAATCTGTCACAGTTTTCTTAATTTCTTCTCTGTTTGTGTTCTCCCCTTACC TTTAAATACCAGTTTTATCACTGGTGTCAGAGCACCGATCTGGTGTCCTGAAATCCACAACTCCGAGGCTGTGCATGGTG TAGACACGACAGATGGAGCGAGACACCGAGGACGGGACGCAAGAGAAGGAGATGATAACCCGGCTGGAACTGAATGAAGC CCGGACCAAGAAAAACGAGGAATTCCTTCCAGCTATAGCAGCCAAGTTTGTGTGAAGCAGGGCGTCCAAATTCCAGATGG CAGCAGCGAGGCCAGTTGGGACCGCGACGACTCTAGAGAGAGCTTTATGTTTGTTCCAATGGTGGGAAAGGTGCAATCCA GCACCTACGTGGGAGGCTTTCAAACTGGCAGTTGTTAGGCGCTTTCAGCTGTCCATGGTTCAAAATACGTTTGAGTTTCT GTTATCTCTCATTCAAACAGGGACGGTGGAGGAGTTTGTAGATGAGTTTGAGAAGTATGAGGGGGCCTCGAAGGAGATTG ATCTGGAATTTGTGAAGGAATATTTCTGAACGGGTTAAAGGAAGAAATTCAGGTAGAAGTGAGATTGTACAACCTTATTA CTCTTTCGGTAGTTATTCAGGAAGCCCTCGAATGAACTGAAAAATGTGGTGCTGAATAGGAAGACGCATAATACTTACAC CACCGTAACTAATGGGTTCTATTAACAAACAAAGCTTTATTTGAAAAGAAACCAGAGAATTCTTCGGCAGGAAGTGTCAT TGGCAGTAGTGGAAGAGGGACAGCAGGGGAAGTAGCTCGAAATAGGGGTGGAGAATTCAAGTACTTGACAGGGGCAGAGA TGAGGGTAAAAAGGGTCATGTTTCCGCTGTGATGAACCCTACACCCGTGAGCATCACTGCAAAAACAAATAGTCCTGTAT GATCGTGCAAGAGGAGGGAGAGGAAGACGAGGAGGAGGAAGGAGGCCTTTCTACGCCAGAAAGTTTCAAGTCCTTGCAAC TGTCACTTTTCTCCATGGATGGATTCACTTTAGCTAAATCATGGAAGGTAGGGGGAGAGTTACAAGCACAAACAATCATT GTTATTGATTGTGGAGCATCTCAATTTTATTTCCAAGGAGTCGGTGGAGAGGTTGCAATTACCAGTAGCAGATACTCTCA CACATGTCATGGAAGTGGGGGATGGGCGCAAGGTGAGATGCCGAGGGAAATGCAAGGGACTGCTGATCCAGATGCAAGAT TTAGACATTATCCAAGGCTTCTATTTGTTCAACTTAGTGGAGTAGATGTGGTCTTGGGGTTGGATTGGTTGGCTAGCCTT GAGAAGATAAAGGCTGAATTTGGAGGGCTGGGACTCACCTTGAAGAGAAGGGATACTACGCATAAGATTATTGGAGATCC TGCTCTAACCAAAGAGAGGGGATACTGTGCATAAGATACTGTGAATTTCATAATGATAGATTATTGGTTGAAGTATTCTT TCTCTTAAGTTCCTCTTTGGTCATACTGAAGGAATGCATGTTCCTTATATGTATCAGAGCTCCAACAATGGAGCTCGCCA CTTCTGCCGGGCTATGATCTCTACCTCTGACCTACCTGTTGTCGAGGTTTAAAGCCGTGTAATCGCAAAACCAAGGCAAG ATTACCTTCTTTCAATTTCTCGGATTTCATCACTAATCTTGGAGTCGACGAACACTCTTCTCCTGCATTCTCTGATTTTG TCAGGGAGCAATCAACATCTGTGAAGGTCGAAAGATACCGATTCTGTCACCCGTCCTCTGATTCCTTCAATTTCTATATT CCCCGATACAGACTCTGGATTTCCGGCATTGAGCCTGATCCTTTCATCTTCGGTAGGTTTGACAATTTGTTGGATTCGAC ATAAGAATTTCCTCTTCAAGAATCATAGACCATTTCTTGTCCATCAGATTCAGTTATGAAGTTCGAAGATCCTTCAGCTG ATCGAGATCGTTTGGAACTAAACTTGATGGAGGAGCTCCGAGGTCAGATTTTGCAGATGGCCGAGTTTCTACTTGCGTGT GATTCAACCACTGCCAAAATCCAAGAATTAACGAACTTGTGGTGGTTGCTATGAAGAATGTGAGAGATACGACATGTGCG GTGGAATTTGCCACCGTCGCAGAAATTCAGTGGTTCATGAAGTCTTTGCTAGGATTGTGGAGTTTTTCTTTTAACTGGGT GAATGATTTGTTAATTTTGTTTGATCTGGGTGGATCTTGGAGCTGCTTACAAGGTGTTTGCAAAAATGCTCCAGATATAG GAGTAAAATGGAACTAAATATAATTAATATATGCATGCTATGCAATTGACGATAACTTTGGCACATTGGAGAGGTTGTTA GAATTTGTTTATCAAATTAAAGAGCTCATGTTTCAATTGAGACTGATAAGGAAGTTCAGTTCTTTAAAAATGCCCCAATT GATATTGATAATGCTCTTAATTTTGTTGTCATCAATGTTAGTTCTATTGAATATGAGCATGTGCTGCTGATTCCTTGTTT TGAGTGTTTGCTTATAAAGGGACATGAATTTGTACTGCATGTTCTACACCATCTGCACTCCCTCATGATGTTGGATTCAG GTGGGAAATCTTCATCTTCTGCTGTTTTATATGGGAACTTTCTCTTGGGGTGGCTAAAGATATGTTGGAATATTTTCCAG CTTCAGACAAGTTTTTTAGTAGACTTTATGGTGAAGCCCCATTTTTGCCTGAATCCACCTTGAATATTTTGAAAGATCTC TGCTATTCTGATGTAATGATCATGATGGAAAAATTGCCCGTGACATTGGACGTGTGATTCAAGCCATTGGTGCTCCTCTT GTATCAATTTTTGTTTTCCATAATAATAGATTACTAGTTGAAATATTCTTTTCTCAAGTTCCTCTTGCCTTTGATCAAAT TGAAGGATGTATGTTCCTTACAAACTGTTTTCTTGGAAAAGGTGAAGAACTATGTTCAGAAAGCTTTTTATATTTTGCAG CTTAAAAAGCCCAACAAAATTAGACTGGGAAATTGGGAAACTCCTGTTTTGTCAAAGGAGCAACTACAGTATGCTGCCAC TGATGCTTTTGCTTCTTGGTATCTCTATGAGGTTAATAGTAACTCATCCACCACTCAACGACTATCAACCACCTTGTTCT CAAATTTTGCCAGCTTGACGTGACTAGGATTCTCTATTCTTTTGCAGGCAATTAAAAATCTCCCAGACAGTAGTGGCAAA GATGGTGGTGCGCCGCAACAATGAATATGTGTGTTTGGATACCAGTTGTTGCAACACGAATAAACTCTTATCTCAAATCA TATTAGTTATGTTTGTCTTAAAGTGCATGGTAAAGTCTAGTTTGCACTTGTCAACTGATATCCAAACACAGCTACATGTG TTTCAAAGTTTATTTCTTGTATATTGCATTTAATTATTTATATGTTCTAAATATCTGTTGTATAATATCTGAGATTGCCC CAAGACATCAAACAGTATGGATTTGGCCCCTGCTCTGGCCAGCAATTTTTATTTAATTGATTGTAGATTTGTTTGGAATA TAAATGAATCAAACAAAGGGAATCGTTTTGTCTTGGGAAATACGAAATAATGCGTAATGTTCTCTTGAGTTGAATGTTTC ATATATTTTCATATATTGTGCCTAAAATATTATACTCTGGTGGTGTGAGGATATTATCGCCTTTTACCTTTCCATATTAT GCCCCACTCTTTTAGCTAATTTCTTTGCTGGAAAGTAGAAACTTCATCCGCAATTAACGGTACCTTGTCTTTGCCCCACT AAGGTTAGTAGGGTGATTGAAAATAATAAAGTTAGTAAGATTCTTTTTGTACCAAAAAAAAAGTTAAGATTCTGGTTGGC TATTTATTTATTTCATTTTTTTTTCTACTGAAGGGGCTAAAGCCCAAAGAATCGGAAACCTTACATGCCCCTCCTATAGG TGGTGGCAGCAGAATCTGTCAAGAACGGACCACTGCAAAAAGAGGGTAGAGAAAAAAAAACCCTAGTATCTCCTTGAATA GATATA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCGGTTAGGGGAAGAGGAAAAGGAGAGGGAAGAGTTTGGTTTCCCACGACTGGCCTCATTCGTCTGCGAATGCGA GCCTCTCTCTGTCTCAGAGGAAGAACTTCAAGCCATCGAATCCACATTTCAATCCTCTCATTCCTCCCTCCGCCGCCGCC GCAGCAGCCACCGCCGATTGCCCACATCGCTTCTCGCTCTTCAACTCCCAACTCTCTCACCTTCTCACTCTCAAGGCTAC TCAAGGATGAGATTGCCAGTAATGAAGTTTAGTGGCCAAATTACGTATAGCAGGAGTTTTGATGATGTACAGAAGGCTGT AACAAAGCTCTTAGAATTTGTTGAAGAAAAGAAAAGAGCGATGATGCGAATTGCAATTGGATTTGACATTGAGTGGAGAC CCAGCTTCGTAAGAGGTGTTCCTCCTGGGAAAGTAGCAGTAATGCAGATATGTGGTGACACCAGTCATTGTCACGTTCTA CATCTAATTCATTCTGGTATCCCCCAGAATCTACAGCTTTTACTTGAAGATCCCACAGTTTTGAAGGTTGGAGCTGGGAT TGGCAGCGATGCTAGTAAGGTTTTTAGAGACTATAACGTATCTGTCAAAGGTGTGGAAGATCTTTCCTTTCATGCTAATG AAAAGCTAGGTGGAGGTATTAATAAGTGGGGTCTTGCAGCTTTGACTGAAACAGTTTTATCGAAACAGCTTAAAAAGCCC AACAAAATTAGACTGGGAAATTGGGAAACTCCTGTTTTGTCAAAGGAGCAACTACAGTATGCTGCCACTGATGCTTTTGC TTCTTGGTATCTCTATGAGGCAATTAAAAATCTCCCAGACAGTAGTGGCAAAGATGGTGGTGCGCCGCAACAATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRLGEEEKEREEFGFPRLASFVCECEPLSVSEEELQAIESTFQSSHSSLRRRRSSHRRLPTSLLALQLPTLSPSHSQGY SRMRLPVMKFSGQITYSRSFDDVQKAVTKLLEFVEEKKRAMMRIAIGFDIEWRPSFVRGVPPGKVAVMQICGDTSHCHVL HLIHSGIPQNLQLLLEDPTVLKVGAGIGSDASKVFRDYNVSVKGVEDLSFHANEKLGGGINKWGLAALTETVLSKQLKKP NKIRLGNWETPVLSKEQLQYAATDAFASWYLYEAIKNLPDSSGKDGGAPQQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13620:SF45
59 281 223 8.4E-82 –
PANTHER
PTHR13620
59 281 223 8.4E-82 –
Gene3D
G3DSA:3.30.420.10
80 283 204 1.1E-55
IPR036397
SMART
SM00474
101 280 180 2.1E-19
IPR002562
Pfam
PF01612
109 277 169 1.8E-18
IPR002562
CDD
cd06141
116 277 162 1.84304E-61 –
SUPERFAMILY
SSF53098
125 275 151 1.12E-33
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0008408
Molecular function 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0040600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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