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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0042600 |
| Transcript ID | LotjaGi6g1v0042600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomeric repeat-binding factor 1; TAIR: AT5G58340.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q8W119|SMH4_MAIZE Single myb histone 4; TrEMBL-Plants: tr|A0A151RPR4|A0A151RPR4_CAJCA Telomeric repeat-binding factor 2; Found in the gene: LotjaGi6g1v0042600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8145092..8152001) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATTGGGAAAATCGCAGAACGAAGAAAAAAATGGACAGTGACATGTCCGGGTGGGTCATTGAGTTTCTCCTCCGGA GCTCCGTACCCGATTCCACCATCCAGAAAACCCTCGCCGCCCTCCCACTCTCCGGCGCCGATCCCCGCCTCAAGAAAACC CTCCTCCTCCGCACCCTCCATTCCCACCTCATCAACGCTTCCCTCTCCGAAACCGCCCTCGAGATTCTCGAACTCCTCGA ACAACTCCACCTCAACGACGCCGTACCCGTCCCGGACTCCTTGCGCCGCGCCTACTGCGCCGTCGCCGTTGAGTGCACCG TTAAGTACCTCGCCGCCTCCCCCGATGACCCCTCCGGCGAGTACTTCTCCGCCGTCCGCCGGATCTGGCGCGGCCGTGTT GCTGCATTGTCGGAGGCAGGTCGCGCTAGCGGGCTGGTCTCCGATGATTTGGAGCGGTGGAGGGATGATGTCGAGGCCGC GCTGTGGGATCCTAGGGTTTCTGAGAGGATTGCGGGGCTGAACACGAGGTGGGTCGCGATGGTTGAGGTCAGGGGGTACC TGAAGGAAGCATGGGAGATCATGGGTGCTTCGTTTCTCGACTTGATGGCGACGGGGTCGAAGGGGAAGGGTTTGTGCCTT GGAGGTGTTTGTGAAAATGATTCTGTGAGAAAGCGTGGTGATGGTGGGTTAGAGTGTTCGGCGAAGCGTGCTGATAGCCT TGAAGGTGTTTGTGAAAATGATTCTGTGAGGAAGTGTGGTGATGGAGGGATAGAGTGTTCCGCGAAGCGTGCTAATAGGA ATGAAATCGATGATAATGATGGTTTGTGCCTTGATGGTGTTTGTGAAAATGATTCTGTGAGGAAGCGTGGTGGTGGTGGG TTAGAATGTTCTGCGAAGTGTGCTGATAGGAATGAAGTCGATGATAATGAGGGTTTGCGCCTTGAAGGTGCTTGTGAAAA TGATTCTGTGAGGAAGCATGGTGATGGAGGGTTAGAGTGTTCGGGGAAGCGGGCTGATATGAATGAATTTGATGATAATG AGGGTTTGCACCTTGAAGGTGTTTGTGAAAATGATTCTGTGAGGAAGTGTGGTGGTGGTGGTGGGTTAGAATGTTCGGCG AAGCGGGCTGATAGGAGTGAATTCGATGATAATGAGGGTTTGTGCCTTGAAGGTGTTTGTGAAAATGATTCTGTGAGGAA GCATGGTGATGGAGGGTTAGAGTGTTCGGCGAAGCGTGCTGATAGGAATGAAGTCGATGGTAATGATGACAATGGCACTG ATGATGGTGCATGCCGCATGGAGGGTGTGACCGTGACAGAGGAAAACCAGGGCAAGGAGCAATTTGAAGACACAGTTGAT GTTCCTGCAAAGGGAAATCAAGGTCCCTTTTTTCATCTCCCTACGCCCTTATTTTCTGTTTCAGTTCCTTTAGTTCAAGA TTTTCTTTGTTCTTTTTTAGTTTGAGTAAAAACTGCGTGTTGCTTTGTAAATTTCGATGGCAAGGTTCTTTTGCTTAGAG TTTTATTTGGTGCTAACAAATATGTTTGGTTTTGGGCACTGCAAACAATGGTGTAACAGCAAAAGTGGGGGTAGCAGTAT TGCTTTATTTGTATATGCAACTGACTGTGGCTTTTTATGCTGCATTCTTTGAGTGTCTCTTGTTTTTTTTTGCTTGCAAG CATTTTTGGAATATATGTACTATTTGTTTGATTATACATTATCGAATTAAGTATATACAAATGTTTGATCTAGTAGCCAA TGAATTATAATTTAGTCACACGCACACACCCTCCGTGGAAGGATTTTGATTGCTTGGCTTATTAAGTATTAACCGGAAAT TAGCACAAAAGTATTTTCTCATTTTGCTGTCTCTGTAATGTAAATATAGCCAAGTAGTTGTCTGCTATTCCTGATTCCCC ACCCACTATAGGGCTCTTGTGACAGACAAATGTTTACTGTGTTGAAATGAACTGTTCATTCATTTTCTGAAACAAGCTTC AATGATACAAGTTCTTACAACACTGTTCAAGAATTGCTATGTCTACACTTACTTTATTGTTGTTTACATTCTCTTTACTA TATTCTGTCCCCAAAAGCAGTTCAGAAAGAAAACATTCAGCTCAAACGCAAGCAGTTTGTACTTCAAAAATGCCATAGGG GAGTTCAAATCTCTGGTGCTGAGGAAGTGGTACCAAAAAAATCGCGTAGCAACTGTGACCCCTTGCCTAGTGCTGAAGTT AAAAAAGTTCGAGAATCCCTTAGATCAAGTTCTTTGGAGCTACAAGCAGTGGTCACGGATCCTCTTCCTGATGCACTTCA TGCTTCTGAAGTTGTAAGATCTCAATTGTCAATGAAAGATACAAAGCATGAGCCACATATTATTGAAAACCAAAGTGGAG ATGCATATCTACCAGATCCAGATGCTTGCAGGAGTATTGTACCTTTTCTGCCTAATAATGCCGATCTTAGGAAGGAGTCT TCTGTACATTGCAGTAACGTTGATAGGCCCAACTTAATGGAGCGGAGAAGTAATGCTCAAACATATGAGGTAATTATGTT TGTAATTACTTGCTTAGTCAGAAGCAGATTATTTTTAATATTTATCTCTTAGGGAGGGACCAGGTTTTGGTCTTGGGATC TTGTTCAATATATGCCTTTTTTTATGGAAAACAGTAGCTGTGTCTTGGGGGAAGATGTTGAAGGACCGACTGTTTTTTTT ATTTATCAATGAGATGGTTAATGGTGTCTTGTTTTGATGGGTTCTCTTTACTGATGTTGTGGGTACTCAATTTATAATAA TGGAGAGAACCCCCAAATTAATGATACAATGTACTTCAGCTAAGTCGCCGGAGTAAAGAATTATCATTTGAAGTCCTTGA ACTATTCAAATGCTGACCATAGCAGTCCTTATGATGTCGTTCATTTTGGTCCCTGTGGGGAATGATGTGATCAACATTTA AATAGATGTGTACTGTGTTTCTTTAGTTTAGGGATTAATAAAATCGGTGGTAAATGTTGGGTCTAATTCAAGGGTTTACT CTATAATATATAATTTGCCAGATGTATTAATTATTTCCTTTTTGCAGTGGAATGATTCGATTGATAATTTGCCACAAGTA ATACAGCCAAGAAGACGGAAATTGAAATGGACTTCATTGGAAGAGGAGACACTGAGGGCTGGTGTTAAAATGTATGTGCT TTTTCTAAGCTGGTTAAACTATAAATTCCTAGTGAACTGTCATGGATACAAGTTACGCTTGAAATTGAAAGTTAATCAAT TAACAGTTTCATACTTTATTTAATTTTATCTCATTTGCCATATTTCTTATACAGGTTTGGAGGAGGAAACTGGAAAGCAA TCCGAGATTTTTACAGTAACATATTTGAAAATAGAAGCGCAGTATGGAATCTGTTCACTAAATTACTTTGTCTTGTTACA TTCTGAACTCATGCCTCTAATGTAATTCAGATTTGTTATTTTTTCAGGTTGATCTCAAGGACAAGTGGCGAAACATGCTA CGCTGACACAAATGAGTTATTTCAACATTCATATGTATATATTAAGGGGTATCTTTCGTTGCATTTGTCCTTTAAAATTG TATTACTATTGATGATATATACTTGTATGAACGTTTTTTGCTTGATTTTTTCTGTTTTAAGATTATGACTGTATTCATCA TTATGGAATTGGGTGCATGTGTTCTTGTGTCATTCTGTTCTTTTTCTGTTTTGGTTGGTTTTTTGTTCAATTGGATTTTG CCTGTATTTTAGTTTAGTTTAGTTTTATTGTTCACATTAAAGATATGCTCATGTTTGTGCCTTGGAAATTGATCTATAAA GCTTGATAAAATTTGAACTGATTATTAATGGTTTTAAAAACTGTTTTTAAATATGTGATCAATTGAATAGTAAATATAGC AGTAAAAGGCTTGAAGGTGTTAGGTGGCTCAGTTGCTAAAATCCTTTGTAATGAGAACAAGGATTTGAATCATATCCCAC CCAAGGTAGTCAGAAGCGGGATTCAGCAATAAAGCGTGGAGGGTCCAAAAGCGTGAAGCGCTAGCTAAAGCGTAGGCTTT AGCCGCTTTTGCCAGTTATATATATATTATATATTTTTACACTTATAAATATTTATATGCATATAAATGGTATAATTGAC AAAAAGTCTTAAGAATATCATACCTAAAACATAAAATACCATAACTCATAATTGATCATTCATACATAAGTCATAAAATA ACCTATATATTAATATACCCATTAACAGAACCCATTCGAACAGTGAGAGAACAGAGTAATATATATATATATATATATTA TAGCTATTATAGCCATTTTATAAAGTGACAAAACCATTGCAAATTGGGGTTCAGAGAGATACAGTCGAAGGAAGAGAGAA CAGAGGAGGTGCTTCCAAATTTTCGAACAGAGAGACAGAGAGAGAGAGGGTCGAAGAGGAACAACAGAGAGAGAGGGTCG AATCTGCATATATTCAAAGATAGAAGAGGAACAATTGAAAATTAGGTTTAAAATTCCTAATTTTAACAAAACGGGTCAAA AAACCCGGAAACAAGGAATCTGGCAGAAGCGGCAGAAGCTTCAAAATCGCGCTTCTGCCACGCTTCTGGGCTTTTGCCAT GCTTCCGCCGAATTCCGCCTTAGTCGCGCTTTGAAGCGCAGCACCACCTCAAGCGCGCTTTAGCGCTTCAAAGCGCGCTT CTGACTACCATGATCCCACCTGTACCATGTTAGGTGCCTCACTTTCTGCTGCAGGGGTTGGACATGCTGGGTCATTGGGT TTGAACTCAAGGCTTGGGTGGGTGAGTTAAGGCTAGGTCAGTTACAAAATTAATAATAGAGATATATACCTGAAAGAAAG AAATGGGTTGTGTTGTGCCTACCAAAGCTCAGGATTCAGTGGTGATTTAGGTTGCGGATAGTCTGGAGTCTTGTGGTATA TGGTGGATTTAGTTGGCTATTCAAGATTTTTATGAAAGCCATCTGCTTGGGACCTTGTGGCTTCTTGGTGTTGGCTGAAG TGGGTGATAGGGTGATGGGTTCATATGAGGACAGAGGCGTGGTGAGGAACTGAGACATGTGTAAGCTAAGCCAGAGAGAG GGTAAGATGTGAAGCTGACACCTAAAGGACTGAGGCTGAGAAATGTCAGTGAAGAATGAGATATTTTGTATAGTCACTGT AGAAGATAGAAACGCCACAGATAGAGACAGGACCTGGTTTGGGCCTTTCTTTTAAACTTCTTAAGACAAGAACTCCAAAA CTTAAGTAACCATCTATCATTTCAAGTTGGTGCGTCCCCGAGGGTTAGCTCAAGTGCTAAGAGCTAGGGGACATGGGTTC AGGGTTCGAACCTTGAGGAGGGACTAATTTACTAACATTTGCCTATCAAAAATAAAAATAAAAAATTTCAAGTTGGTGCC GGCATGATGCATTACTGCCATGGCCATAACAGGGAAAAATCTATTGTACTCATATGGTATGTACTCCCCTACTCAAACAA TGATACATGTCCCTTGCATGGTTAGATTTTCCTATTTTTCAATCTTAAATTTAAAATGGGGGGAAAAAATTAAGTGTAAA GAATGAGTAGTATAGTCTTTCGTACTACCGAGTACCGAAAATTTGCTCCCATAACAGCTTCCATGGCACTGCCATCACCA AGCTGTGGTGTCACAAACCATTGATGGTGTTTTGGTCGAATTTGGCATATGGTTGTCTGAAGGCTCAAGTTGGCCTTTAG GATAAACAGCATTACAGTTTATTCGGATCTGCAAAAATTTATCATATTCAGGTAATGACAAACTAGTTTTGATAGCAGGT TCCATCAATGTAATCAAGTTACCAAGGAGTGAGGACCAACTGGTACTCGAAGTTTTTGCATGGCCCAACTTAAACACTTC TCCTTCATCTCTGCATTTTGGCTTCAGGGGCTCATCTGAAGGTTAGACTTTTAGTGCATGTTCTTCCTAAGATGTATATA GCTAGCATACATTTACCCAAAGTTTTATGGCTCTTAAATAATTCTTCTTCTTCTTCTTCTTCTTGAACTAGCTGATCTTA ATTCAGTAAACAATAAGATTTTTTTGTCATGATGTGTGCCTGAAATTGTCGTGGCAAGTTTAGGTCCATGTTAATAGTTT TACTTGCATTCATTTTAGGAGCTACCATGTGTAAAATTTTGTCATACAAATTATTGCTTCATAATATATAGATGACCAAA TAGAAACTGGTATCAGCTGCTAACAAATTGCATAGCATTTGACTTATGATTGAGGAAATTCTGCATTTTACTAGAAAAGG TTTATTAACTTGGGTCTAAATTTCAGGTTTATCCGTGTACCATTACAAATGAGAAGCTCGAGATCAAAAGAAATCATGCT AACTTTGAGATTGTACTATATTACAAAGAATGTTATAAATATGATAGATACTGCTTTTTGGTTCATCTGTATAGGCAGAG ATTCCATGATAGGGCTATGTAGTCATGTAAAATGCTTAATCTAGTTTTTTTGGGTCTGTTTCAATTATGCTTGACTTTCT TATTTTTGCCACTTTGTCTTTGAACATGTTGTCATGTGGTGGGTCTCTTCAATTTGATTTCCTTCAATGTATCACATGAT AGGGTCATAAAAGCGGTTAAGTTGGGTGAAACACTAAGCTTGGTGTGATGATGAATCCATCCAATCTAATAAAAATGAAA AAAGTTGATCAAACAAATCTGTTAACTAAATAAATTGAAAATTCAATTTTTTTGTTTATTGAAAGGGATTGGTTCCAATT TGAAATTTAATTTGAAAATTCATCTAATTTAAAATATTTTTGGTACATTCGGAATGAAAGGGTTTGCTGTGACTGTTAAG AGTAGGTAACATGTTCCCCCTGTCATCTTA
CDS sequence (LotjaGi6g1v0042600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGTGACATGTCCGGGTGGGTCATTGAGTTTCTCCTCCGGAGCTCCGTACCCGATTCCACCATCCAGAAAACCCT CGCCGCCCTCCCACTCTCCGGCGCCGATCCCCGCCTCAAGAAAACCCTCCTCCTCCGCACCCTCCATTCCCACCTCATCA ACGCTTCCCTCTCCGAAACCGCCCTCGAGATTCTCGAACTCCTCGAACAACTCCACCTCAACGACGCCGTACCCGTCCCG GACTCCTTGCGCCGCGCCTACTGCGCCGTCGCCGTTGAGTGCACCGTTAAGTACCTCGCCGCCTCCCCCGATGACCCCTC CGGCGAGTACTTCTCCGCCGTCCGCCGGATCTGGCGCGGCCGTGTTGCTGCATTGTCGGAGGCAGGTCGCGCTAGCGGGC TGGTCTCCGATGATTTGGAGCGGTGGAGGGATGATGTCGAGGCCGCGCTGTGGGATCCTAGGGTTTCTGAGAGGATTGCG GGGCTGAACACGAGGTGGGTCGCGATGGTTGAGGTCAGGGGGTACCTGAAGGAAGCATGGGAGATCATGGGTGCTTCGTT TCTCGACTTGATGGCGACGGGGTCGAAGGGGAAGGGTTTGTGCCTTGGAGGTGTTTGTGAAAATGATTCTGTGAGAAAGC GTGGTGATGGTGGGTTAGAGTGTTCGGCGAAGCGTGCTGATAGCCTTGAAGGTGTTTGTGAAAATGATTCTGTGAGGAAG CATGGTGATGGAGGGTTAGAGTGTTCGGCGAAGCGTGCTGATAGGAATGAAGTCGATGGTAATGATGACAATGGCACTGA TGATGGTGCATGCCGCATGGAGGGTGTGACCGTGACAGAGGAAAACCAGGGCAAGGAGCAATTTGAAGACACAGTTGATG TTCCTGCAAAGGGAAATCAAGTTCAGAAAGAAAACATTCAGCTCAAACGCAAGCAGTTTGTACTTCAAAAATGCCATAGG GGAGTTCAAATCTCTGGTGCTGAGGAAGTGGTACCAAAAAAATCGCGTAGCAACTGTGACCCCTTGCCTAGTGCTGAAGT TAAAAAAGTTCGAGAATCCCTTAGATCAAGTTCTTTGGAGCTACAAGCAGTGGTCACGGATCCTCTTCCTGATGCACTTC ATGCTTCTGAAGTTGTAAGATCTCAATTGTCAATGAAAGATACAAAGCATGAGCCACATATTATTGAAAACCAAAGTGGA GATGCATATCTACCAGATCCAGATGCTTGCAGGAGTATTGTACCTTTTCTGCCTAATAATGCCGATCTTAGGAAGGAGTC TTCTGTACATTGCAGTAACGTTGATAGGCCCAACTTAATGGAGCGGAGAAGTAATGCTCAAACATATGAGTGGAATGATT CGATTGATAATTTGCCACAAGTAATACAGCCAAGAAGACGGAAATTGAAATGGACTTCATTGGAAGAGGAGACACTGAGG GCTGGTGTTAAAATGTTTGGAGGAGGAAACTGGAAAGCAATCCGAGATTTTTACAGTAACATATTTGAAAATAGAAGCGC AGTTGATCTCAAGGACAAGTGGCGAAACATGCTACGCTGA
Protein sequence (LotjaGi6g1v0042600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSDMSGWVIEFLLRSSVPDSTIQKTLAALPLSGADPRLKKTLLLRTLHSHLINASLSETALEILELLEQLHLNDAVPVP DSLRRAYCAVAVECTVKYLAASPDDPSGEYFSAVRRIWRGRVAALSEAGRASGLVSDDLERWRDDVEAALWDPRVSERIA GLNTRWVAMVEVRGYLKEAWEIMGASFLDLMATGSKGKGLCLGGVCENDSVRKRGDGGLECSAKRADSLEGVCENDSVRK HGDGGLECSAKRADRNEVDGNDDNGTDDGACRMEGVTVTEENQGKEQFEDTVDVPAKGNQVQKENIQLKRKQFVLQKCHR GVQISGAEEVVPKKSRSNCDPLPSAEVKKVRESLRSSSLELQAVVTDPLPDALHASEVVRSQLSMKDTKHEPHIIENQSG DAYLPDPDACRSIVPFLPNNADLRKESSVHCSNVDRPNLMERRSNAQTYEWNDSIDNLPQVIQPRRRKLKWTSLEEETLR AGVKMFGGGNWKAIRDFYSNIFENRSAVDLKDKWRNMLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 519 | 519 | 2.8E-132 | – | |
| PANTHER | 1 | 519 | 519 | 2.8E-132 | – | |
| Gene3D | 460 | 519 | 60 | 4.8E-16 | – | |
| ProSiteProfiles | 463 | 519 | 57 | 17.146 | ||
| SUPERFAMILY | 464 | 519 | 56 | 7.9E-15 | ||
| SMART | 467 | 519 | 53 | 5.5E-6 | ||
| Pfam | 469 | 518 | 50 | 1.6E-8 | ||
| CDD | 470 | 519 | 50 | 2.72135E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0042600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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