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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0043200 |
| Transcript ID | LotjaGi6g1v0043200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G16930.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0043200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8185971..8194043) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTTCCCGTTTTCCTTCTTATTTTGTTCAAAAACTGAAGCTTATCACTGACACAGAGCTTACCAATGACAATGGTT GATAGGATTAGCAAGTTGCCAGATGAAGTTCTCTGTCACATTCTCTCATTTCTTCCCACTGAAGAAGCTGTCACCACCAT TCTTCTCTCAAAGAGATGGAGGCCACTCTGGCCTTCACTGTCTACCCTAGACTTCGATGACTTTCGATTTTTCCGCCGTC GTCGAGATCTCCAAGGCAAGGAGAAGCAAAACTCAGACCCTTCCTTTATCAACTTCGTGTATGCTGCTATTCTCTCACGA GATTTGCATCAACCCATCAAAAACTTCAGGCTCATATGGGGTGAAAGTGAAAGTCTAGGTTCCCATGTCAAGGTGTGGTT AAACGCCGCAATACAACAACGCCAAGTTCAGAATATCAAAATCCGCAGTTGCGTCTCCCAAGTGCCTTGCTCTATTCTGA AATGCACAACCCTTGTTGTTCTCAAGTTGAGTTCTGTAGTTTTTGATGATTTTTCAACTGTGGATCTTCCCTCACTCAAA ACACTGCATTTGAAGAGTGTTTTGATTGAGAAGCTTCAATCTTTTGTGGAGCTTCTTTATGGGTGTCCAATTCTGGAAAA TTTGAAAGCAAGGGATGTATCTTTTTATGACTATGAACTTGAGGGGAGGGTTAAAAGTTTGCCCAAGTTGGTTAGAGCTG AGGTTTTGGTTTTTTTTCAAGGATATTATATTCCTGTCAAAGCTTTTTCAAATGTGCAGTTTCTGCTCTTAGACGAGGTT TGTATATGGAGAAGGAGAGTGTTTTAGTATTTGCTTAGAAAATGTTTCTAATACTTATGATAATTTATCTTTATATCTCG TGCAGTGCGATGCGGATATTCCTGTGTTTCCCAATTTAATTTATTTGGAGCTCTTATTTGGAGGCTCTATTAAATTCAGT TTGGCGCTTGATATGCTCAATCGTTGCTCTAAGCTTCAAACTGTTGTTTTTAACCTTGATGGTCGTGATGATGTTTGGCC ATACCCATGTTCTGTTCCTGAATGCTTTTCATCACATCTCACAAAGTGCATTCTTGAAAATTTTGATGCAGTGGAATGTC ATATGAGATTTGCAAGGTATGTTATGCAAAACTCAACATCGCTACGTACTCTGACAATTTGCAGTAAGAAGTATCTTAAT TATCAGGAAAAGCTTCAAATGATAACAGAATTAGCATCATACCCAAGGAGCTCTGCAATTTGTGAACTTTTATTTGAGTA ATTGATGTCCTTGTCACTAGTGCATTTGTTCCTAGCTCTACATTCAATGTATCTGCTGGTTTTGGTGCTTTGGATGGATA CAGACTTTATGTATCGTTGTACTCTTCTTGTTATTGTTTTCAAAATTGTCGATCTCATGCACTACAGCTACATCTACTTC TGTAAATGTGACAGAAACTGAAATGAAATAGCTTTTCAAATTTGCGGTGTGGATGTGTATCTGTTAGAACTGGTAATCCT ATACTACTGAATTAGGAAGAAAATCACAGAACAATGGAGAGAATCTCCATGAAAACTGAGATGAATTGCATAGAATGGAA GAAAGAGACGATACAGAGGGAGAGAGAAACAAGTTTCTCTCAACAATCTAACTGAATACCAGTATTCAGTTACAAATCCC CAACTAACCAAAAACTAACTCCTAACATGACAGCTTAGCTATTTATAGCTAAGACTTCCTGAAAATACAACTAGTCCTTA GAGACTTTATTATTCCACTTTAGTCCCCAGACTTACTTATTCTGCCTTCTCTGATATACCTGTGTTACAATAGGCTTTCC CCTAATCCTATCAGTATCTTAGCCCATTTATCCTTCATAGAAATCATCTTAGCCCATTTATCCTTCATATAGGAGAAGGA CATGAGTTTTTATTCAATATGCATTTAAAGTACTACTTTGAAGTAATTAAAAGCACTTGAGGAACTGAGTTATTTTAGCT TGAAAATTACTGATTGCTTCAGTAAGACTACCCTTTGGTGTATGTGTTTGAAAGCTCTAACTTAATGCATAGGAAGGGGG TAAAGTTGATGTTGATATATGATGAGGCATGTGGTTAAATTTTGCTGAAGATTGTTAGATTTTGTAACCTTGTGACATTT GAAATTTTTTCAAGAATGTGCACACACAGAGGTCCAAATTCAAATTCAAATCTAAATGATAATGAGAGTTTTTAAAAAAT CACCTAGGGAAGTAGTCTATTTGGAGATAACATGACGTTGCCCTTCAATATCTTAGGCCAGATGATTTGTCATTGGATTT AATTACTAAACTTATAACCTGGACAGAAATATAATTTCTTGATAACCTCGACAGTAACATAATTTATTGTGTCATTGGAC CTGCATCTACCTCCATTTGTTGATAAAACAAGGAGTTGGCTAATATGTACAATGCCAGATGATTCCTATGTCATTTGTAG TTTCCTTCCTCCAATCTCCCTTTCTAACTGATTTCAGATTTCGAAAAAAGAATAGAAGAAAAAGTGTGTTTATATTTAAA ATATTGGAAACCCTTACTATAAATAGAGTTATGAATGGTACAAGTATGAATCTAATAATTCCCGTTTTCAAGTCTTCTAA GTGCTGATAGTTCGTTAATTATGTACAAACATGTATTGATCTTTTCTCCTTTTTAAAATTTCATTATGCTTCTTAAAGAA TCCCAAATGTACAATAACATAAAAAAAAACATATATATAAAACCTGCTACTGATTTCCTATATGATATATGACATTTAAG TTTGTTTGATATACTGTGGTGTATGGATCCACCCTGAAGGTAAAGCTGCATGCTTCTACAGCAAGTATTCTTAGGAATAT AACAATAAGTCAGTATCATGCTAGAAAAAAGCTAACTGCTCACTGATAGGTACACGGGATTAGCTAGTTAGTATTAGATT TTATTATTAGTATCTTTTATCCAGTCAGCATTAGGTTTTATATTTTATTATTATATTTTATTAGGTTTAGCATAATTAGA GAGTGAGTCTATAAATAAGTAAGTTAGAGAGACAATTGGGTATCTTTGTTTTCACTTTGGAATTAGGGTTTAGAGAGCGT TGGGTCTCTCTGGTTCTTGGGAGGGTGTTTGGGATCCTTGTATCTTTCCCCCAATTCCTATTTGGCAATTAGGGTTTTAC CATTTAATAATATTAGATTTGGCTGGTTTCTATCATTGGTATCAGAGCACCGATTCAGGTGCCCTGGCCAAGAAAACCCT ACAGTAACAACGTATGAAGCAGATGGGTGGTAAAAAGAAAGAGGATTTCAGAGGGAGTTCATTGGCACCGCAGGATAAGG AGGAAATATGCGCACTTTTGAGAGATTGGATGATTGAGAACGCCGAGTTCAGAAAGCAAGAAGAGTTGATTGAAGAACGG TGGACAGAACTCGATGAACGAAGAAAGAAGAAGGAACAAGAAAGAAGTTGATGAAACCCTGATATTTATTCAACAGAAAA ATGTACAAGAAACAGATGAGTATTCGAGAGACTCATCACTCTCCTAATTCCCAATTCCCAAATGATCCCAAAGATACCTA AACCCTCTTCACACTCCCTTATTTATAGGCTAAGCCGTAACTAACTAACTAACTCTAAATGCTAACCCTTAACTAACTAA CTAACTCCAAGTACTCATCAATACTCCCCCCTAAACATCCACCTTGTCCTCAAGGTGGGGTAAAACACAAGCTTCTTTAA ACAAACAAAAAACAAATACTCCAACAGTTGGGCCTGGCCCATTAGAGTAAGGGAATGAACTGGTCTGTAGATGATTGAGA AAGAAAAGTTCCTCTTGGGCCCGTTCCTTCTGTTTAGCATTATGGGCTTTGGCCTTGTGGTCAAACTTTGACCCAATTCT GAAAAATCTAGCTGAGCCAGCCTTGCTCTGCTTCGTGTGAACGCGTGTGCGTGTGAAGACAACGGAAAGACCACACCCAA CCAGCGACGACGGAAACGAGCGTCCCCCGCCATAACTGCAAAGTCCGGTGGCTTCGCCGGCGGCCGTGAAACGGTTACCG ACTTGCGAATGAGCGAGCGCCCTTTACTCTCCTCCGTGCGAACTAACTCGAGGCCACAGTATCCCACCACCGCTGTCTCA GCCAAATCCGGTGGCTTAGCTGGAGGACGGTTGGCCACCAAGTCCGATCTGCAAGAATCGCCAAGGATGAAGTGTGAGCT GCCACCACTGCGGTCTGGTGGCTTAGTCTCCAGTTGAATGGCAACCATCGAAGAGCAAAGAACAGAGGTCTGAATGAAGA CCTCCGTCCAGCAAAAGAACGTGTCCGGCAGTCGATTGGCGGTTACCGCCGTGCAGAGACATGAATCCGGCGGTTTCCGT GGCGGCCGTCTCTCCCAATCGAACCCTAAATCACTGATTTGGGGCAAAACGATTGGTTGCACCTTCTTCCTCCCATGAAT GCTGCAAATCTGCCATTTCTCCATTGAAGAACCTTCCTGTAACCGCTTGATTTTGATTTCCCCTTCGGCGTCGATCTTCT CCCCTTTCGCCGTCAACGTGCAATCGATGTAATCAACCACGGTGTCCGGTTGACACCGTGACACCTCCGCTGTTTGCTCC GCCGCCATTGCAAACTCCGAGTCTTTCCGCGACGCTTCCATCTCAGAATTCTCCGGCGAATATGGCTTGATCTCTGATTT CGCCAACAGCACTGAATTGGCCTCAGGTTTGGCTTCCACCACAACAGTTCTTCGTTCTGCCTCCAAGACTTCTTGCTTCC CAGGGATTTCTTCCTCCTCTGAATCTTGGACTGGTTCTGGCATGTACGGTTCCAATTCTGGTTCGAATTTCCTCAACAGA GCCTCCACAAATTCCCACCATGTTGCCTTCTGATTGCGTCTTCTCCAGCAAAACCACCACATGAAAGCTTCACCAGTCAA AGCCTTCTCTGCCCCTGAGAATTTCTCCTCTTCGGATACTCCCTTGGCCTCACAGTGTTGCTCCACCATAATGAGCCATC CGTAGGCCTCTCTTCCATCAAATTCTGGAAACATCTTCACGAATTGATGGCAATCACAGCACCTAGATCGGTGCTCTGAT ACCAATTGATGAAACCCTGATATTTATTCAACAGAAAAATGTACAAGAAACAGATGAGTATTCGAGAGACTCATCACTCT CCTAATTCCCAATTCCCAAATGATCCCAAAGATACCTAAACCCTCTTCACACTCCCTTATTTATAGGCTAAGCCATAACT AACTAACTAACTCTAAATGCTAACCCTTAACTAACTAACTAACTCCAAGTACTCATCAGAAGTGAATCGGAGGCACCAAC CGTGGCAGAGCAAACAGCGGCAGAGGCGTTGCTGGAAGGAACGGGGACCGCAGCGGAAGAAGAAAGAGACGCTATGGTGG CTGAGCAAGCATCTGTAGCAGAGGAAGTCTTGACGTTTGAGGAGAGGCGAAAACCCAATCTTGAAGCCGCGGATGAAGAA CAAGTAGCAACAGAGGTGTTGCGAAAAGAATCTGAACCCGATTCAGTTAAGGAATCAGAAGCAATGGATGAAAGAAGAGG TCAGCAACTGAAGGCGATGGAGAAACGCAAGCATCAACCGCCACTGGTGCTGAGTAGAGGAACGCTGAATAGAGGAACGA CCAAGGTGCCATCAGCGGCGCACTTCGCACGCGCAGAGATGAAGTTGTTGGGCGAGAGAAATATGGGAGCGCTGCTTGCA TCTTGTCTTCCTCTCTCACCTTCTTCAACAGAAAGAAATGCTCCAAACTGTGTACCCAATCATACGCATCATCACCCCCA AAAATTGGAATTTTCCTCACCAATTCCTCTGAAATTCTTGCCATGCTCCTTGCTTCTTCCATAGCGCAGCAAAGAATTGG TGGTTCAGGCACCAGATCGGTGCTCTGATACCAATGTTAGAACCAGATGTTTTATTGATGATAAACCCTAATTCCCAAAC TGAGAATCAGGGCAGAGTAAAAGAGAAAGAGTCCACACTCAATCTCAAGAGAGTCCACACCCTCTTCCTAGGCCCCAAAA CCCAAAATGAACTAAAAGATACCCCTAGCTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATAACATTCTAACTA ACTCACTATGTCTAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCACTCACTCTCTTCTATCACCTCCACAAACAA AGTTACATGCTTAGATTAAAGACTAAAGTAGAGCTTTGGTGATTTCTTAAATTATATCTACTTTAGACTTGAAGGTGCAG TTAGTTTGGGTCTCTTTATATAGCAGGGGCTTGAGAAGGTATATCTTCCAATAAGATAACAAACCTCCAATAAACAACTA GGGAATATGCATCTGATGGAAACAATTTTTGTTAATATTTTAGCTCTTTTTGCTCTGCTAAACCAAATTAATAGCCATTC ATTGAGCAGAAAGACATGAACCATTGGTTGTGTGAAAGCAGCCGTGTAATCTACTTCATCGCTTTCACCAATCGTATTAA ATATTAACTACTGTCTGCCTCTGGTCTAATTGGGAATGGTAAGTTTGTGTTTGTTTTGTAGAATTAGGAGAATTCTAAGT TTTGAGCCTTAAGAGGCTATGAGTTATCTGAAGAAAATAGTATTTGGCGTGTTCGGATTTCATAACATTTACAATTAGCT TCAAGGTTTATTTGCTATTAAGGTTGGAGGGCTGCATACAAATTGCAAGTAATTCGTGTTACGCATTGTGATTGAGAACT GTTGCATGTTTGTTGGATTTCTTTTCTCATCTTGGCTGCTTTTATTGTTGTCACTATCCTGGCTCTATTATTAAAAGTTC ATTTTTTTTATTGCATAAGATGTCTTGTTCTATGCTTTTGTGCTCTGGGCTTAAGCAGTCGCGCCATCTACTACTTCTTG GAGGAACCTACAAGAAGACACATTACTTTTTCATAGACTCTAGCAGTAGCATCAATGTGATAAATGCAGATGTTATGAAG CAGCAAAGAAGCTTTCGCTCAACTCTTTGTTTATGCATTGCTGTTCTAACAACACCCCTGTCCCTTCAATGATCTAGCCC TATTTAAGTCTTCTATCTATCTTCCCTAAAATACTTTGTCTGTTATTTATATTATAACTAGTAAATGAAGAATACATAAG AAGATGATAGAACTTAAATGTATCTCTGAGAACCATGACAAAACAATTATTTGACACATCTTGATATTTCTAATGCAACA ATTGTGAAATTAATTTGCAATACATGCAGTCAAATAAGTCCCAAACGTTACTATCATCATTAACAGTCCGTCCTTTTCTT TATTTGGTAGTTCTTCTGTGTAATATTGCACATTATTCAAACTTCACCTATATAGTTATTGCCTAGGTAAATTTTAACTT AATTTATAGGTGGTACAATTTTGTGGCTAATCTTGGCTTTGCTATTGCCAAAAGTGGTTCAGCAAGAAACATTTCACTTT TGCACTCATTAAGATTGATGCTAGACACATTGGACGGTGCACTCCAATTAAAGGCATGGAGTAACCGAGCAAGTAGCACC ATAGTCATTGTTGTTCCAAGATTCACCCCAGGACAACCACGCCTTCCTGTACTAAAGGAAATGAACTTCAATTCTGGCTC AGACAAAACTACATCAGACCCATCACTTTTTAGATGACGTTCAGGTTTGAACTTGTGGGGCTCACTCCAAACGTTTGGGT TTCTTCCAAGACCACTTCTGCTTAAAATCACATGACTACCCTTTGGGATGAAGTAATTTCCAACCATTGTGTCTTTCATA GAGACATAAGGGACATTGAAAGGTGCTATGGGATGCATGCGAAAAGATTCTCTTGCACAAGCCTTCAGAAATTTGAGTTT AGGGATGTCTGATTCTTGGACCATTCTCTCTTTTCCAACCACATTGTCTAATTCTTCAGTGGCTCTTTGAAGCAACTCAG GTTGGTTTATCATTTCTGCTAGTGCCCATTCAACAGCATTTGATGGATTGTCCACCACTGCCATCATCAATTC
CDS sequence (LotjaGi6g1v0043200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATGGTTGATAGGATTAGCAAGTTGCCAGATGAAGTTCTCTGTCACATTCTCTCATTTCTTCCCACTGAAGAAGC TGTCACCACCATTCTTCTCTCAAAGAGATGGAGGCCACTCTGGCCTTCACTGTCTACCCTAGACTTCGATGACTTTCGAT TTTTCCGCCGTCGTCGAGATCTCCAAGGCAAGGAGAAGCAAAACTCAGACCCTTCCTTTATCAACTTCGTGTATGCTGCT ATTCTCTCACGAGATTTGCATCAACCCATCAAAAACTTCAGGCTCATATGGGGTGAAAGTGAAAGTCTAGGTTCCCATGT CAAGGTGTGGTTAAACGCCGCAATACAACAACGCCAAGTTCAGAATATCAAAATCCGCAGTTGCGTCTCCCAAGTGCCTT GCTCTATTCTGAAATGCACAACCCTTGTTGTTCTCAAGTTGAGTTCTGTAGTTTTTGATGATTTTTCAACTGTGGATCTT CCCTCACTCAAAACACTGCATTTGAAGAGTGTTTTGATTGAGAAGCTTCAATCTTTTGTGGAGCTTCTTTATGGGTGTCC AATTCTGGAAAATTTGAAAGCAAGGGATGTATCTTTTTATGACTATGAACTTGAGGGGAGGGTTAAAAGTTTGCCCAAGT TGGTTAGAGCTGAGGTTTTGGTTTTTTTTCAAGGATATTATATTCCTGTCAAAGCTTTTTCAAATGTGCAGTTTCTGCTC TTAGACGAGTGCGATGCGGATATTCCTGTGTTTCCCAATTTAATTTATTTGGAGCTCTTATTTGGAGGCTCTATTAAATT CAGTTTGGCGCTTGATATGCTCAATCGTTGCTCTAAGCTTCAAACTGTTGTTTTTAACCTTGATGGTCGTGATGATGTTT GGCCATACCCATGTTCTGTTCCTGAATGCTTTTCATCACATCTCACAAAGTGCATTCTTGAAAATTTTGATGCAGTGGAA TGTCATATGAGATTTGCAAGATGTCTTGTTCTATGCTTTTGTGCTCTGGGCTTAAGCAGTCGCGCCATCTACTACTTCTT GGAGGAACCTACAAGAAGACACATTACTTTTTCATAG
Protein sequence (LotjaGi6g1v0043200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMVDRISKLPDEVLCHILSFLPTEEAVTTILLSKRWRPLWPSLSTLDFDDFRFFRRRRDLQGKEKQNSDPSFINFVYAA ILSRDLHQPIKNFRLIWGESESLGSHVKVWLNAAIQQRQVQNIKIRSCVSQVPCSILKCTTLVVLKLSSVVFDDFSTVDL PSLKTLHLKSVLIEKLQSFVELLYGCPILENLKARDVSFYDYELEGRVKSLPKLVRAEVLVFFQGYYIPVKAFSNVQFLL LDECDADIPVFPNLIYLELLFGGSIKFSLALDMLNRCSKLQTVVFNLDGRDDVWPYPCSVPECFSSHLTKCILENFDAVE CHMRFARCLVLCFCALGLSSRAIYYFLEEPTRRHITFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 327 | 327 | - | – | |
| SUPERFAMILY | 4 | 57 | 54 | 1.44E-12 | ||
| ProSiteProfiles | 4 | 52 | 49 | 10.504 | ||
| PANTHER | 4 | 329 | 326 | 3.6E-67 | – | |
| PANTHER | 4 | 329 | 326 | 3.6E-67 | – | |
| Gene3D | 5 | 291 | 287 | 5.1E-23 | ||
| Pfam | 6 | 40 | 35 | 7.5E-7 | ||
| SMART | 10 | 51 | 42 | 7.9E-4 | ||
| SUPERFAMILY | 127 | 319 | 193 | 7.82E-7 | – | |
| Pfam | 299 | 329 | 31 | 2.8E-4 | ||
| Phobius | 328 | 347 | 20 | - | – | |
| Phobius | 348 | 358 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0043200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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