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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0044600 |
| Transcript ID | LotjaGi6g1v0044600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6; TrEMBL-Plants: tr|A0A0L9VDI0|A0A0L9VDI0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0044600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8401581..8403118) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCCGCCATCACTCCATTTTCCCTCCATTCTTCTCCTTCTCTCTCATTCCCTTCAATTTCCCCACTCACGAGGAAAAT ATTTTCTTCACCCTCCACCATAAATACCCTTTAATCCTTCCTCTTTCATCTTGTTTCCTAAACCTCTCACTCTCTCCTTT ACTCTCTCATTTCCCCCCATTTTCCCTCTGCTCTCCCCTGTTTTCCCGCCAAACCTTCTCTCCTCTCTTGGTGTATTGAG ATATATACTCTTTTCCATTTGCTTAGTCACCAAAAAACACCAACTTATCCATTTTCTTACTCTTTTGAGTGACACACACC AACCCTTCCTTGTTTCTCTCTATTTCACCTACCCCCATGTCCGTACAATCAACACTGAAGCTCCACCATCCCAAACAATC CACTGCAAGTTCCCATTTTGAGGGTGACCCACCATGCAAATCCACCGCCAAAACCCAAAACCGGAAGAAGCTCCTCCGTA TCATTCTCACCGACCACGACGCCACCGACTCTGACTCTGACTCTTCCGGCGACGATAAACCGCCACAAAACCCATCAAAG CCTCCAAGAGTGAAGAAGAAAATCACCCAAATCAACATGCATCTTCCTCCCTTCTCAGATTCCTCAACCCCATCACCTTC TCCTTCTTCATCTTCCAACCCTGACCCGACCCGTTTCAAGAGACCCAGAAAATCCCCTGCCCGTGTCTCTACCTCTCGCT GCCGGAGCAAATTTGTGGGAGTTCGCCAGAGACCCTGGGGCCGGTGGATCGCTGAGATCCGAGACCCGACCCGTTATGGG AAACGGGTCTGGCTCGGGACGTTCGACACGGCGGAGGAAGCCGCTGCTGCCTACGATGAAGCCGCCTTGAAGTTTAAGGG CCCTAATGCCGTCACCAACTTTGCGTCTCCGACGTCTGTTCTGGCCTACTACGACGGTGACTCGACGGCGTTTGACGGTT TCCGTCATGGCGCGGTGGATGCTTTCGGGTTCGATATCGACGCGCCGTTAAGTTTGACGGACGTTAACTCGGTGCTGACT AGTCAGCGGTTTGGGAAGGACGAGTTCAGCGAGTTGAACCCGGACGAGTTCTTGACCTGACCTAAAACCCTGGGGGCTTA AGTGTCTTTTTGCTAAAAGGAGGGGACTATTCAGTAATTATCTCAAGCTTTACGTGGCATGCTTATCTACGTTGTGGTCG TGGAGTTCCGAAACTACCCTTGTAAGAATTTTCCCGCGGCCCGAAGAAGTGTTTTTACTTTTTTGTCCTATGAGATTTTG TAATTAAGTTTATTATTAGTATTATGTAGAGGGAAAAGCTCAAAAAAGTAAAATCTGAGTGAGTGATGATGGAAAATATT AAAAAGGAGTATTGTAGTTTCGTATATAATATGGTAAGTTATTCTCAATTAAAAAATTTATTGACCAAAGTTCGATGATA CTTATAATGTTTTGGACGTTGGCTAATGGCTTGTTATCACGCATGATGTCGTTTTTGTTTATTTTAATTCTGCATGCATA ATAATGCCTTCTTTGGTA
CDS sequence (LotjaGi6g1v0044600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGTACAATCAACACTGAAGCTCCACCATCCCAAACAATCCACTGCAAGTTCCCATTTTGAGGGTGACCCACCATG CAAATCCACCGCCAAAACCCAAAACCGGAAGAAGCTCCTCCGTATCATTCTCACCGACCACGACGCCACCGACTCTGACT CTGACTCTTCCGGCGACGATAAACCGCCACAAAACCCATCAAAGCCTCCAAGAGTGAAGAAGAAAATCACCCAAATCAAC ATGCATCTTCCTCCCTTCTCAGATTCCTCAACCCCATCACCTTCTCCTTCTTCATCTTCCAACCCTGACCCGACCCGTTT CAAGAGACCCAGAAAATCCCCTGCCCGTGTCTCTACCTCTCGCTGCCGGAGCAAATTTGTGGGAGTTCGCCAGAGACCCT GGGGCCGGTGGATCGCTGAGATCCGAGACCCGACCCGTTATGGGAAACGGGTCTGGCTCGGGACGTTCGACACGGCGGAG GAAGCCGCTGCTGCCTACGATGAAGCCGCCTTGAAGTTTAAGGGCCCTAATGCCGTCACCAACTTTGCGTCTCCGACGTC TGTTCTGGCCTACTACGACGGTGACTCGACGGCGTTTGACGGTTTCCGTCATGGCGCGGTGGATGCTTTCGGGTTCGATA TCGACGCGCCGTTAAGTTTGACGGACGTTAACTCGGTGCTGACTAGTCAGCGGTTTGGGAAGGACGAGTTCAGCGAGTTG AACCCGGACGAGTTCTTGACCTGA
Protein sequence (LotjaGi6g1v0044600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVQSTLKLHHPKQSTASSHFEGDPPCKSTAKTQNRKKLLRIILTDHDATDSDSDSSGDDKPPQNPSKPPRVKKKITQIN MHLPPFSDSSTPSPSPSSSSNPDPTRFKRPRKSPARVSTSRCRSKFVGVRQRPWGRWIAEIRDPTRYGKRVWLGTFDTAE EAAAAYDEAALKFKGPNAVTNFASPTSVLAYYDGDSTAFDGFRHGAVDAFGFDIDAPLSLTDVNSVLTSQRFGKDEFSEL NPDEFLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 1.0E-90 | – | |
| MobiDBLite | 1 | 121 | 121 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 183 | 183 | 1.0E-90 | – | |
| PIRSF | 7 | 183 | 177 | 1.8E-46 | ||
| MobiDBLite | 39 | 58 | 20 | - | – | |
| MobiDBLite | 82 | 104 | 23 | - | – | |
| SUPERFAMILY | 124 | 183 | 60 | 3.73E-23 | ||
| CDD | 124 | 183 | 60 | 3.11238E-20 | ||
| Gene3D | 124 | 184 | 61 | 1.8E-30 | ||
| Pfam | 124 | 175 | 52 | 1.0E-14 | ||
| ProSiteProfiles | 125 | 183 | 59 | 23.907 | ||
| SMART | 125 | 189 | 65 | 5.5E-35 | ||
| PRINTS | 126 | 137 | 12 | 6.4E-10 | ||
| PRINTS | 149 | 165 | 17 | 6.4E-10 | ||
| PIRSF | 182 | 247 | 66 | 5.9E-12 | ||
| PANTHER | 182 | 247 | 66 | 1.0E-90 | – | |
| PANTHER | 182 | 247 | 66 | 1.0E-90 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0044600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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