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LotjaGi6g1v0045500.1

Overview

Field Value
Gene ID LotjaGi6g1v0045500
Transcript ID LotjaGi6g1v0045500.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ribosomal protein; TAIR: AT1G26910.1 Ribosomal protein L16p/L10e family protein; Swiss-Prot: sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10; TrEMBL-Plants: tr|I1MZN4|I1MZN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8492796..8501311) extracted from Lotus japonicus Gifu genome v1.2.

AGTATCCTTTCTTGTCACAATTGTAGCATTTGAGGCTTATCTTTCTTCAAGATTTTAATTTACCATGATTTTGACTCGCA TTTTGGGGACACGTTTCGTTGATCCGCCTCTCACCACTATCAAGGCTTCTAATTTGAGCTTTCTGGATGATCTTTCTTAT TTTTACGCCTGAATTCTTTGTAGAATGATTCATTGACATATTATTTTACCACTTCCGCTAAATGAAGATAAAGACTTGTT TGTTGTAAATCTCTGGTTCCCCTCGTTCCTTCTCTCTTGGACACATTCTAGGAGAGGGCTCGTACTGATCTTTGAGAAGA TTACAAGGTGTTGGAGTGGCAGGCAGGATAAGGGGTCTTTAAGAATAGCTCTTACAACATCTTAAAGGATACACATTCAA TATTGTTTGTAATATTGATGACAAGTTGATCATACGAATCTAGTAAACTCAAGCTTTGCACGTTTATTTTCCAGTTTTGA GAAATTCAGGTAGATAGCTAATAAAATAATGTTTCAGGTTGTTGATGTGATCTGACACCAAAGTGAATTCACTCATTTTA AGAGTATAGAACTTTCTCTGTAGGAAAATTATGTTGTGACATGACTTGAACTCGTACATTTAGATGAGAGTATCCTAGAT CTCCTTCGTAGCTTTCTTTTCTGTAATACTGAAAATCGAATATGTCATTGCTAGATGCAAGTTGGCATATGTCATCCATT GATTTCTACTTTTTATCAGCAATCTCAACATGTCTACCTTCAATTTCTGCTAAGCAATTACCCTTCCTCAGGAGTTCCTC TATCTTCAATTTTCATTGGGAGAAATGACTCAAATTGAACTTCTCGATCTTAGTTTTTTTGCTGAAATGGTTTTACACCA AATAAAATTGTAACCAAACCGCCTAAAACAATTTCACCATGAATAACACAATATACATGAACATTATTATATATTATGAC AACACACTAAAATGAATCTAGTATACGTTAACAATCACTGCAAAAGTCATTGAGAAAGCAAAAAGAGAATCTCAACGCCT ACAAAGAGTCTCAAAGTTTCCATAATGAGTAATGTGTATGTAAATAAACGACTACACATGCATTTATAGGTTCAATGTCC ATCATAATAGTCTCTCAAGGCCCTTAAGAAGACTTACCAAGATCCTAGCCTCCCTCGGACAACCCTGTGTGGTTGTTAAC AAATCGGTTGGCATCTCGCCGATTAACCTTAACTTGAACAGGATGCTCCTTAAATACGTCATCACGTCCGCCTCTATAAT ACTCACTTAATTGCAAAATCTTTGACCCGACTGAGATGCTATTGGTCCTTTTATGCCGGCCGAAACAAAAAAAATCCTCT AAAATGGTAGGAGAAAAACCCCATCTTTGTTTTTGTCCACTTTTTTATGTTTTGAGTCCAACCAGCTAAGCCACCATCTC GAACATTCTGGGCCGCGTGTGAACCCACTGTGAAAAGATGACGCAAGCCCACACGCACACACCAAAAAACGCGCCATTGC AAAGGTATATATACCACCACCTCCCTCTTCACCTTCCCACCATTTCCATCCCATTTTCAACAACCACAACCGCCATGGGA AGAAGTAAGCAACTCTCTCTCTCTATATATATATATATATATCACATTTGAGTAACCAGCTCTGGTATGAATTTCAGGAC CGGCGAGGTGTTACCGGCAGATAAAGAACAAACCATACCCGAAATCCCGCTTCTGCCGCGGCGTCCCGGACCCAAAGATC CGAATCTACGACGTCGGGATGAAGAAGAAAGGCGTAGACGAGTTCCCCTTCTGCGTCCACCTCGTCTCATGGGAGAAGGA GAATGTCTCCAGTGAAGCACTCGAGGCGGCGCGGATTGCCTGCAACAAGTACATGGCCAAGTTCGCCGGAAAAGACGCGT TCCACCTCCGCGTGAGGGTGCATCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCAGGTGCTGACAGGTTG CAGACTGGGATGAGAGGCGCGTTTGGGAAACCGCAGGGGACTTGTGCGAGGGTTAGTATTGGGCAGGTGCTGCTTTCAGT GAGGTGTAAGGATGGGAATGCGGTTCATGCTCAGGAGGCGCTGCGTCGCGCCAAGTTCAAGTTTCCTGGTCGCCAGAAAA TTATTGTTAGCAGAAAGTGGTTAGTTTCATGAATTGTTTGCTCTCTGTTCTTCCTTTGAAATTTTTGGATTTTAGTTCAG GTGAAGCAAATTTTTATGCCTGGTGTGCTTGACTTAATAATTGTTCTTCCAATTTTTTTAGGGGATTTACTAAGTTGAGC AGAAGTGATTACTTGAGGTTGAAGTCTGAGAACAGAATTGTGGCTGATGGGGTCAATTGCAAGGTTTGTTTCTAGCATGA TGTGGTGGTGTTTATGATGGTTTTGAAATGAATTTGAGCAATGTGATGTGATTCATGGTTTGTTTGTTGGGTAGATTTGA TAATAAGGGAGTTTGGAGATTTTGACTATGAGCTCGTTTGGATGCCTATTAACACTGATTGAAGCTTATTTAGTGCATTT TTTAGTAAAGAAGCTTCGATAAGTGCTATTTAGATATCATTCAAACGGGCTCTATGTTTTGGATGGATTAGGGGAATGAC TAAATTTGTTTTTTCTCTTCCTTTCAGGTTCTTGGGTGCCATGGACCTTTGGCGAATCGGGCGCCCGGAAGAGCTTTCTT GCAAGCTGCGGCTTAGGCCATTTAGTTGTAGGAAGCTAATTGAATGTATGATTTGTGTTTTCACCTGATGAATGGGGATT TCTGTTTGAATTTGAACTGTAAGAATAAAACTGTGTTTAGTCATACTAGTAGGTATTTGAATTATGTATCTAAATGTCTT CCAAGATGTTATGGGGCATGAGAGATGCAAATTTGATGTATCTAATTTGATTGTTCTGTAAAGTTTTCGAAATATATAAA TAAATGTGTTGTTGTTTCATTGTGTACGCATTGTTCTTAACTATGATGTTCCTACTGTTACCCGTTGTGTTCCTTTAGTA ACATCCATTTGCGTTGCTTTTCTCCTATAGAAATAACACCTTTTAAAATAGGAAAACTATAAGCAACATATACTTTTATC GTGCATCCTTCCGACATGTTTGCAGCAGAGTAATTTCTAACCGCTGCAAACATTGGCTGGGTTATTTCTCTAAGCAACAT ATACTTTTATCGGACCCCTAAAAAAACACTTAAACATTCGCCATTGAAGGAAATATTGGTTTGGGGTTTTTTCTTAGTCA TTCTGCTCACTAGACCGCCTACCTGGACGTGACAAAGTTAGCTTATAATTTGTATTCTGATCTCTCAGCTTCTTCAACAA GCAATACGGGATATGTGTTGCACCTTGATCGAAGAGTTGACTCAAACACCCGAGTAGCCAAATAAGTCAGACTACTTGAT TGGGGGCCTCCTATTCTGGACCGACGTATTTGACCCAATTTTAGGCCAAAGGAGCGTCAACTTAGTCCACTCGGCTTGAG GCTTTATCACATGGTTCAAATATTTAAGTCTCTACTACTCTATAAGGATATGGGATTGGGTCAAGCCCTAACCCCCTCAA CCTCAATAACTCATCTCACAATATCTTGGACTCTTGGTCTTCACGGATAATAAGATATCTCCTTCATGACAGCCATAACA AACATGGGCATATTGCAGTATAGCCTACGACAACTTTTATCACCAACTATATATAAAGGGTCGCCCCACACAATTCAGGT ACCGACACTTTCTATGAACTTACACTATGCTCAACTATTTACTTATTTGAGTATCATAGTCTCTTTTACAGGTGACCCTC TGCTGATCCAATCATTCGGAACATCAAGAACATCCATCCATCATTCGAGTCTGAAGCTCCGTCACCAGGCCCACTCACAA AGCTGTTCAAATCAATTAGCATGCCTGCTGTCAATTTACTTGCATTACCATATTCATTGACTACCCATCTCTACTTTATG TGACAATGACAATATTTACATGTATCCATCTCTGCTAAATATATCGTAAATTGCACATTCTCATGCTTTCAAAATCTCAT ACATCATCCTCCCTCCACCCAAATCACATCTTTCTTTCATCATTGACTCAATACTATCTTAACCTCTTGAAAGTCCCTCT AAATCTACTAAATAATGAAAAACAGTTTTTACGAGGACTTTGAGCATCATTGCAGTTCAATTAGTCCCCTAATGTGGCTG TTTGGTGCTACATTGCGGAATTTTTCACGATTTTAAACACACTGTAATTGCAAACACCTCCACAACAGCAAAATACTGAA GCTCTGTCACGTGATGCAGTTCGTAATTTGAATCCATGATTGATCATCAAGCTCTGTGATTTCAAAATGAACTATAAACT AATGAACATTATTTGAAGGTTGGTGGTATATGGTAATTTGCCGATAGAACTACTCAGAAAATGTGTTTGTTTTACGAGGT AGTAAAATTTTGCAAACAAATAAGCAAAAAGCGGGATCCTACTCTTTCATGAAGGAATCATTGCTAAAGACTCAATTACA ATTGCTTGGACCTGTAATATGTGCTTGCTTACGGCTGGTTGTTGGGCAGTTTGCTGAGAACTGAGTGCTCCGGTTTGTGA TCACACTCGAAGTCTAGATGAACAAATGCCCGCTCAACGTCTGGAAGCTTCTCAAGCTTTATCTGCAGAGTCTCTCCAAT CGTATGCGCTTCTTTTAAGGGTAAATCTTCTGGCAGTTCAATGTCAACCTGCCCCAAATCAAACCCAAATGAAGAGGCAT TGAATCTTATCTTTCTGAAGAATATATAATAATGTCTATACTTCATATCTCCCAAACTCTAAGGTTGACTTTTTTTTTTT AAAGCAAAGATAGTTTATTCATCAATAAAATTCTGAGATTATCTCTCTCAGATAAGAATAAGATAAAGACAAACTCCCAC CAATCATAAAAAAACCCTACCAATGAAAAACCATTACAAACACCCACCAACTCTAAGGTTGACTTATATGAACGATTAAG AAAAAAAGTATAGTGGGATCAAGGTGTTATTTGAACACAAGGGTCAGGTTTGTGAGAATAAACCCTGTGCAAGTCTCATC ATTTTTTGTCATGATAAAATATAAGTACTGACATTCAAAAATAGTCACAAATATGTTGAAAATGTAATATATCCATTTCG AATGTTATTTTCCAAAGAGAAAACTAACTGAAATTAAGAGAAACTTGACTGGATCCATTAAGCATATTTCTCCATAAATG AGTACAGGGTTAGATTCATGTAAGCATTTTGTCATTACTAATGCAGAATGCCAAACTAAAAATTTAAAAGATTAGAGATT GCTTTATATAAGTTTTAGTTTGGCAATACAAAAAAAAGTGTGTATTTTGGTGAACAAGGCTAATCTAAAAATGAATGCTT CTATAAATTAATCTGGTATAACATAACATACCTCCACAAAATATAGAACGCCAAATGTGTATGCGCGGACGGTGTCAACA CGCTTAATTTGCGGGTGCCTTATAACGAGATATGTCAGCTTCTGCAAAACTTCAGGAGGTGCAGTTTGTCCTACTAGTGA AACTGGGCATAGGAAGCAGTCTCAGAATCAGAATTGAAACACAAATTTGTTCACAAATAGCAAATAATTTTGCATCCATT TTATACAAGATAATGCAAAGTATTAATTCTAAAACCATTTTAGAATTAATTGCAGAATGATTTCCATACACGCTATAGGA GGTGAAAAAAATCTACTTTTTAGGACGGATATGGCTTGTCCTTCCAGGAAAACATTCATTTTTCATCTCATTTCCAAATC AAAACACTTCATAATTGAAACCAGATATTGCTAATGTGCTAATAATTCTCATTTCAAGGTTTTTTTTATTTATTTCTCTC ACTGGCATATACACTTATTGTAACAGTATTCTGTTTGAAATTCTGATAAGGGTTTACCTGCATTTTCCATGACAGTGCGA GACCAATTTGAAATCGTATAAAGTGCAAGCACAATAGCTCCAACCGGGTCAATCCACCAGTAAAATTTATCACCAAGAAC AGCCGCAACTAATCCAACCACATTTGTTATAACATCAAAGTGGTGATCCTGCAAGTTGACAATTCTAAGATGGTTCAACT ATTTTGTGACTAAATTGATAATATAAACATACAAAGTAGAGCACTAACATCTGCATAGGCACGGACAATCTTGTTCCCTG AGCTTCTGCAGTAAAGCCAGAGAATAAGCTTCACCACCGTTGCTAATATCATAATAGAGTACAACCATATTAGCTGCTCT GTAGACATCTTTTCACTTGGGCTGTTTTGTATTAGTTGCTGTACGGCTGTGATTAGCACCTGAAATCCTGTAACAAAATG GACTCTATGTATCATGGAATCTTATGAATGTTCAAAACTATAAGGTAGTACAGTCTTAGAAGCAGTACAATTCTAACCAT TAACACATTTCAACATATACATCAATATGCTGAAGTTCACTTTTTATCCAGCACTTCATTAATAAAATTGAGTTCAAGTT CTCTGATTGAGGCTAATATGACTGATACTCTGTGCTGTCAATTTTCTGAGGCAAAAAGCCAAGCAATCTATGTAAGGTAT AACATTCTTTGTTATAACAGAATCTTCTGATATATGATCAAAAAAATTAAATAAAACTAACGCATCTATCTTAGTCCCTA AAGGTGTAAATATTCTGTCATCAGCTATAACCAATAGTTGAATGCTAACTTCATAAGAAAGCCTACTCATTTTAGAAATT CTTTTCAATATTTGTTCTCAAAATGATATGGCCTTCCAAGTTTACCAAAGAACTTAGAATTTAAATAGAAGCAACAGAGT GAGAGTGTGGAAAGTAGGAAAAGTTGAGGTGAGTTTGACGCACCAAGTGTTGCCATGATGGCCGCAAAGACGATTATACC CACAGGCTGCACCCTCAACTTTCCAATGGGGTACTTGTAGATATTGATGTTCTTCATTGAGACGTGAGTGAACCAGAGTA TGCCACCAGCCATGAGATCAAGCAAAGAATCCAAAGTTGATGCTGCAATAGCTATTGACCCACTCCTTAATGTGGCATAA ATCTAGACACAATATGGATATGTATATTGTTATTTCACAGAAAGTACTATGATTGACTTAACTTTTTAACAAGAAATTAC AGGAAAAGAAAAGTTCAAATGATGTTACAATAATGATAACTTTTTTAAATATTAGCTTTTTGCAGAAGTTAAAATCAACT TTTACACACCTTAACGGCTTAACCTTTTCAGATGCTCTCTGCTTTATAACAACATATAAGTACAAACAAAATACTCATGT CAACTAAAAGCTCCTATAAGCTACAAAGTAGTTCAACTTTGCCTATCTATCAGCAAGTATAATATAAAACAACAAATATG AAAGAAGCCAATCAATGATTGAACAAAATGTTCAAATATTCGATTCTCACAAGTCACTAGTTTCAATCCAGAATTCATTA TTGATAGAATTGATTTTGGTAAAATTGAGTTGAACTTAAAGAGATTTATGTTTGAATTTATTTATAAAAAAGTGATTTCT GTAGGATATTGTTGAGAAGCTCAATTGTAAAATTTCACGATTGATTATGTTCACCTAGAAGCTGTTTTTTGGAGCTAAAA TTGATTGTGAAAGGTAACATCAAAACATGTACAAATTGATTTTGACATACCTAGCATACACATGAGCAGAGCAGCATAAC TAAACTAGCTACTACAAAATGAAAACATGAAATTCAAATGAAATATACCTTCAATATCAAGAGAGCAACATTGGCGTAAT TTGAAATCTTCATTGCCCACTCTTGTTGAGCCTGTTCTTGATTATCCTCGTCAACATTATTGCAACTATCAGATTCCTCA ATGCAATCCACTTCCTCAAACGATTTGAGAGTAGCAAATTGTCTCTCATAGTACTCTTTCTCCCCTACAAATCAAAATTC CAAACACGCCATTAATTCATACTTCACAAATCACATATAAATAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTACCTTGGC TTAAGGCGGTGGCGTTGGAGAGATCAACGTCGAAGGGAGACTCAGGGTCAAGAACAGAACGGACCTTATCGGGAAGCGTA GACAGAAAGTTGGATCTGAGCGAGTGAATCGAGTTCCGGCGAGCGAGTCCGTCGTGTTCGGAGGCGGCGGTGGTGGTCCG GCCATTTTTTATTAACAGCGGTTTCGTGGGATCCGAACCCGAATCTCCGTCCATGAAATGAAATCAATGAAATAATAATC AGCGGCGGTGGTGGTGTATCATATGATATGGTGAGTCACCGGCGCGCATGCAAACAACAACAACAACAACGCTCGCGAGC GGGGGGGACACAGATAACGAAAAGGAGAACGCCCATATCTTGTTCATATATAATAACTGCAAATAAGTCATAAGAGACAG AAATTAAAAATATTCATTTCGAATTGAATATTCTTC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGCAAGCCCACACGCACACACCAAAAAACGCGCCATTGCAAAGGTATATATACCACCACCTCCCTCTTCACCTTCC CACCATTTCCATCCCATTTTCAACAACCACAACCGCCATGGGAAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACA AACCATACCCGAAATCCCGCTTCTGCCGCGGCGTCCCGGACCCAAAGATCCGAATCTACGACGTCGGGATGAAGAAGAAA GGCGTAGACGAGTTCCCCTTCTGCGTCCACCTCGTCTCATGGGAGAAGGAGAATGTCTCCAGTGAAGCACTCGAGGCGGC GCGGATTGCCTGCAACAAGTACATGGCCAAGTTCGCCGGAAAAGACGCGTTCCACCTCCGCGTGAGGGTGCATCCCTTCC ACGTGCTCCGCATCAACAAGATGCTATCGTGCGCAGGTGCTGACAGGTTGCAGACTGGGATGAGAGGCGCGTTTGGGAAA CCGCAGGGGACTTGTGCGAGGGTTAGTATTGGGCAGGTGCTGCTTTCAGTGAGGTGTAAGGATGGGAATGCGGTTCATGC TCAGGAGGCGCTGCGTCGCGCCAAGTTCAAGTTTCCTGGTCGCCAGAAAATTATTGTTAGCAGAAAGTGGGGATTTACTA AGTTGAGCAGAAGTGATTACTTGAGGTTGAAGTCTGAGAACAGAATTGTGGCTGATGGGGTCAATTGCAAGGTTCTTGGG TGCCATGGACCTTTGGCGAATCGGGCGCCCGGAAGAGCTTTCTTGCAAGCTGCGGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0045500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTQAHTHTPKNAPLQRYIYHHLPLHLPTISIPFSTTTTAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKK GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK PQGTCARVSIGQVLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSDYLRLKSENRIVADGVNCKVLG CHGPLANRAPGRAFLQAAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11726:SF30
27 256 230 1.6E-147 –
PANTHER
PTHR11726
27 256 230 1.6E-147
IPR001197
TIGRFAM
TIGR00279
40 213 174 6.5E-76
IPR001197
Gene3D
G3DSA:3.90.1170.10
40 213 174 3.7E-95
IPR036920
SUPERFAMILY
SSF54686
43 212 170 4.71E-75
IPR036920
Pfam
PF00252
51 205 155 2.4E-41
IPR016180
CDD
cd01433
80 205 126 5.39814E-45
IPR016180
ProSitePatterns
PS01257
147 168 22 -
IPR018255
Gene3D
G3DSA:2.20.25.330
215 254 40 3.9E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0045500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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