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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0046500 |
| Transcript ID | LotjaGi6g1v0046500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc finger WD40 repeat protein 1; TAIR: AT4G25440.1 zinc finger WD40 repeat protein 1; Swiss-Prot: sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48; TrEMBL-Plants: tr|I1MB97|I1MB97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0046500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8613546..8616447) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACCGCGTTTCCGAGGGAAGACAATAATGACCTATAAATTTGAACACACCACATTCAAGATTCATTCATTCAACACA ACACAACAAACAAACACACAAACAAACATCGTTTGCTTTCTTGTTCGTCTGAGATTTCTTCGGAGCCTTTCTTGTTCCAG TTCCACTTCTAAGGTTTGCTTTCTCTTGCGAATGATACTCCATTTTCTATCTATTTCTCTGTTACAATCGGCCATGTGGT ACTACGAGTATCTTTCTTCTTTCCGACCCGGCTGAAGTGCCGATTTAATTAGGGTTCCGATTTTAGGGTTTCTTTTATTA GGGTTTCAATAGACTGTTTTTGAGTATGATTGTGGAATGTTTCGGATGCAAGACATTGTTGTGGATGGTGAAGTGGCTGA TTTCGCTGCTATTTGGATGTTTCTGTTTTTTAGAGTATCATGGATATGAGGGTGGCAAAGAGTGAGAGAACTGAACGACT GGGTGAGATTTGCAAATTCTGGCTGCAGGGGAGATGCAACAGAAACCCTTGCAGTTTCTGGCATGGAGAAACACCACCGC CACCGCAATCTGCTGGTTATCGTCATACAAAGACTTCATCTGAGAGCGTCCCTTACTATAACTCCAAGGCCGTGTTGATT AGTAAGAGCAGAGTTGGATCCGGTATCGCTGAGCCAGTTCAGAAGCCGTTACTAAGTAGATGCAATGCTAGGACTCCCTC TGAGAATAACCCTAAGCATAACTCCAAGGCGGTGTTGAATACAAAAAGTGGACAAGGGACATGTATTCCTGAAGCCTCTC AGAAGCCGTCACTGAGTATATGCAAATATTGGGTCACTGGCAACTGCACATATGGTGATCAGTGTCGGAATTTACATTCG TGGCACAATGGTGATGGGATATCTACATTAGCAAAACTTCATGAACACAAGAAGGTACTTGATTCTCTTAACAACTTTTA GATTCAATTCTGATATAATGTATAATCCAATTCTGTGTTTTAATTGATGTCATCTTTATTACCCTTGGTTTATATGTTTC AACTCTAATAGTTGAATTAAATATGATGATCTGTTACTGAAATAATTTTTGCCTGATATCTTACATATTCAGGAATTAGA ATCTATATGTTGCTAGATTTAGTATTTCCCCCTTGTATGTTAAAAGTTTTGGAGTAATTAATTGAAACTTTTGACAACAG ACTGTCACTGGGATTGCATTTCCAGCTGGATCAGACAAACTTTACTCTGGCAGCACTGATGGGACAGTTCGTACATGGGA CTGCCATACTGGTCAATGTGCTAATGTAACAAATCTCGGTGCTGAAGTGGCCTCTTTAATCTGTGAGGGCCCATGGATTT TTGTTGGCCTGCTGAATGCGGTCAAGGTAAGCTCTTCTTATGTAGATCTTTGTATTGCTTCATTTTGTGATCATATGTAT ACATGTTAGCTGATTATATATGGTGTTGGCTGTTGTGAAGGCTTGGCATATTCCGACTGCTTCAGAGTTTACTCTTCTTG GACCTAAGGGGCGAGTCCTTGCCATGATTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGGATGGTGTAATCTCTGCA TGGAGAGGAAGCTCTGATGCCAACTCCCCTTTTGAACTGGTTGCATCACTCAGTGGCCACACTAAAGCTGTGTCTTGCCT GACTGTTGGTGTCAATAGGCTTTACTCAGGGTCAATGGACCAAAGCATTAAGGTATGTCTAATGTCTGTCTGTGAAAGTT TGTGCTCTTGCTTTCTTTTAAATGTATGTATTGCTGCACGTGGAGTTCTTCCAAAGGCAGGATTTTATTGGATTAAAGAA AGATTTCAAATTTTGATTGTCAGTTCTTCATAGTTCATACTGCTGTAGACTTCATTAAAATCTTCTTGGTCTTTTTGGTG TGTTAACATTGAAATTGCTTTATGTTCTTTTGTCATTATGAATCTTGGGTGACTTATCGTTTTCCTATTTGTTACTGTGT TATGCAGGTTTGGGACCTTGATACTTTAGAGTGTTTAATGACACTCAATGGTCATACTGGGGAAGTTACATCACTTATTT GTTGGAGCGATTTTCTGTTATCTGGGGCATCTGACTGCACTATTAAGATCTGGGTTGCCACAGAAGAGGGACCTTTGAAG GTGACATATACGCACACTCTAGAAAATGTAAGCTACTTAACCACTATAAACAACATCTGTACTTAGTCTTTAAATTTTTT ACAAGTATATTTGCTTTTTATCATAGTTGTGGAGTTAGTTGATTCAATCAGTTGATTTTATTTCAACTTTTGGTACAGGG TGTTGTTGCACTTAATGGAATGACTGATGCAGAAGGCAAGCATGTATTGTGTTGCTCGTCCAGAGACAATTCTGTTCGCT TGTATGAATTGCCACCGTATGTAAAACTTAAAACTTGCACTGCATCCTTTTTTTTTATTCTGTAACTTGAGTTATAAATT GTTCACTAACCTTGTGTTCTTTTATCTACAGATTTTCAGAGAGGGGTAGATTATTTGCAAGAAAAGAAATCCGATCAATT GAGGTTGGTCCTGGTGGGCTCTTCTTCACTGGTGATGGAACTGGTTTAGTGATGGTGTGGAAATGGTTGGAAGAGACTAA GGTGGCAGCATCTTCTTGAGAAATGCCCCTTTTTTCCATGTTTGTCAAAAGTGTATATATTAATTGAGAAGTCCGATCTT TCTTACTGACAGAGATGTATTTGTCTCCGCACCTTTTACATTTATGTAACTCTTTTTGTCAATGAAATCAGAATTTTATT TTTTTATATTCCATTTTTTTCCTACTAGTTACTAGTTCATTAATTAACACCTTGTAGTATCCCGGGACCATACATGAAAT GAATGTTATGTTCTGAGTGTTA
CDS sequence (LotjaGi6g1v0046500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATGAGGGTGGCAAAGAGTGAGAGAACTGAACGACTGGGTGAGATTTGCAAATTCTGGCTGCAGGGGAGATGCAA CAGAAACCCTTGCAGTTTCTGGCATGGAGAAACACCACCGCCACCGCAATCTGCTGGTTATCGTCATACAAAGACTTCAT CTGAGAGCGTCCCTTACTATAACTCCAAGGCCGTGTTGATTAGTAAGAGCAGAGTTGGATCCGGTATCGCTGAGCCAGTT CAGAAGCCGTTACTAAGTAGATGCAATGCTAGGACTCCCTCTGAGAATAACCCTAAGCATAACTCCAAGGCGGTGTTGAA TACAAAAAGTGGACAAGGGACATGTATTCCTGAAGCCTCTCAGAAGCCGTCACTGAGTATATGCAAATATTGGGTCACTG GCAACTGCACATATGGTGATCAGTGTCGGAATTTACATTCGTGGCACAATGGTGATGGGATATCTACATTAGCAAAACTT CATGAACACAAGAAGACTGTCACTGGGATTGCATTTCCAGCTGGATCAGACAAACTTTACTCTGGCAGCACTGATGGGAC AGTTCGTACATGGGACTGCCATACTGGTCAATGTGCTAATGTAACAAATCTCGGTGCTGAAGTGGCCTCTTTAATCTGTG AGGGCCCATGGATTTTTGTTGGCCTGCTGAATGCGGTCAAGGCTTGGCATATTCCGACTGCTTCAGAGTTTACTCTTCTT GGACCTAAGGGGCGAGTCCTTGCCATGATTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGGATGGTGTAATCTCTGC ATGGAGAGGAAGCTCTGATGCCAACTCCCCTTTTGAACTGGTTGCATCACTCAGTGGCCACACTAAAGCTGTGTCTTGCC TGACTGTTGGTGTCAATAGGCTTTACTCAGGGTCAATGGACCAAAGCATTAAGGTTTGGGACCTTGATACTTTAGAGTGT TTAATGACACTCAATGGTCATACTGGGGAAGTTACATCACTTATTTGTTGGAGCGATTTTCTGTTATCTGGGGCATCTGA CTGCACTATTAAGATCTGGGTTGCCACAGAAGAGGGACCTTTGAAGGTGACATATACGCACACTCTAGAAAATGGTGTTG TTGCACTTAATGGAATGACTGATGCAGAAGGCAAGCATGTATTGTGTTGCTCGTCCAGAGACAATTCTGTTCGCTTGTAT GAATTGCCACCATTTTCAGAGAGGGGTAGATTATTTGCAAGAAAAGAAATCCGATCAATTGAGGTTGGTCCTGGTGGGCT CTTCTTCACTGGTGATGGAACTGGTTTAGTGATGGTGTGGAAATGGTTGGAAGAGACTAAGGTGGCAGCATCTTCTTGA
Protein sequence (LotjaGi6g1v0046500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMRVAKSERTERLGEICKFWLQGRCNRNPCSFWHGETPPPPQSAGYRHTKTSSESVPYYNSKAVLISKSRVGSGIAEPV QKPLLSRCNARTPSENNPKHNSKAVLNTKSGQGTCIPEASQKPSLSICKYWVTGNCTYGDQCRNLHSWHNGDGISTLAKL HEHKKTVTGIAFPAGSDKLYSGSTDGTVRTWDCHTGQCANVTNLGAEVASLICEGPWIFVGLLNAVKAWHIPTASEFTLL GPKGRVLAMIVGNDTLFAAAEDGVISAWRGSSDANSPFELVASLSGHTKAVSCLTVGVNRLYSGSMDQSIKVWDLDTLEC LMTLNGHTGEVTSLICWSDFLLSGASDCTIKIWVATEEGPLKVTYTHTLENGVVALNGMTDAEGKHVLCCSSRDNSVRLY ELPPFSERGRLFARKEIRSIEVGPGGLFFTGDGTGLVMVWKWLEETKVAASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 447 | 439 | 5.1E-157 | – | |
| PANTHER | 9 | 447 | 439 | 5.1E-157 | – | |
| ProSiteProfiles | 12 | 38 | 27 | 10.775 | ||
| SMART | 13 | 37 | 25 | 0.048 | ||
| ProSiteProfiles | 122 | 149 | 28 | 14.643 | ||
| SMART | 122 | 148 | 27 | 5.3E-5 | ||
| SUPERFAMILY | 124 | 147 | 24 | 4.71E-6 | ||
| Pfam | 128 | 146 | 19 | 2.7E-7 | – | |
| Gene3D | 129 | 275 | 147 | 6.1E-17 | ||
| SUPERFAMILY | 141 | 441 | 301 | 1.23E-43 | ||
| SMART | 153 | 192 | 40 | 2.1E-5 | ||
| Pfam | 157 | 192 | 36 | 1.1E-4 | ||
| ProSiteProfiles | 160 | 201 | 42 | 13.583 | ||
| ProSiteProfiles | 160 | 363 | 204 | 22.28 | ||
| PRINTS | 179 | 193 | 15 | 3.8E-7 | ||
| ProSitePatterns | 179 | 193 | 15 | - | ||
| SMART | 232 | 269 | 38 | 16.0 | ||
| Gene3D | 276 | 452 | 177 | 5.9E-29 | ||
| SMART | 277 | 314 | 38 | 2.9E-6 | ||
| Pfam | 279 | 314 | 36 | 1.2E-4 | ||
| ProSiteProfiles | 284 | 323 | 40 | 13.148 | ||
| ProSitePatterns | 301 | 315 | 15 | - | ||
| PRINTS | 301 | 315 | 15 | 3.8E-7 | ||
| SMART | 317 | 354 | 38 | 3.9E-6 | ||
| Pfam | 319 | 353 | 35 | 7.6E-5 | ||
| ProSiteProfiles | 324 | 353 | 30 | 9.94 | ||
| PRINTS | 341 | 355 | 15 | 3.8E-7 | ||
| SMART | 358 | 401 | 44 | 93.0 | ||
| SMART | 404 | 441 | 38 | 14.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0046500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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