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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0048200 |
| Transcript ID | LotjaGi6g1v0048200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | myelin-associated oligodendrocyte basic protein; TAIR: AT1G54520.1 myelin-associated oligodendrocyte basic protein; Swiss-Prot: sp|Q9SIK7|PSNB_ARATH Presenilin-like protein At2g29900; TrEMBL-Plants: tr|I3SGW4|I3SGW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0048200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8812899..8816471) extracted from Lotus japonicus Gifu genome v1.2.
GACACATGTAGTTTCCGCAATGAATGGGTTGGAAATGTAATGGGAAGAGTTTGAGATCCTCAATCTCCGACACATTTTGA TCTCAATGAAATCTGACACATTTCTTCTTCCTTTCAAAGACAGCACCATTTTTCCTCATCAAAACCTTTTGTTCAGTCAG ATACTTCATTCTCCATGGCATCATTGAATGCAAAAATGGCCTTAAAACCCGTTTGTGCTATCGCTTCGATGCTTCTTGTG CTGTTGTTACTGGCATGCAAACTCAACTTGGCTTCAGCCTCCTCAGGAGGCGTGATGGGAGGGAATTTCTTTGATTCTGA TTCTTCCTCCTCCTCAGAATCATCCACGATTGATTCAGAGCCCCTGCATCGACGTGAAGAAGAAGCTCATTCTTCTCCTG GTGATGCTGATGGGCTTGGCTGGGGAACACACGGTGGAGTACTTATGTTTCTGATCTTCATATTTGGTGTGTTTTTTGTT GGATTTTGCAAAGACACCGATGCAAATACTATTACTCTCTGCAAGCTTCAGGTTGGTAAAATGTGTTGCTCTGCTCTCTC TTCAACTACTATATTCTAGAATAATTCTTGTTCCTGTGGCTCCTGTGATTGTGTTAATTGTCCTACCATACATTCGTTAG CGATATGACTAAATAAATCATTATAAAGGGTAGAGCAATCCTGACCCCGAGCTAGATTTTATGTCAGAGTTAGTTATAAC CCAAATTTAAGAAATTGGTTGTGAGTGTATTATTAATTGTAGCATACACTAGAACTTGGTATTTCTTGTGAAGTATGAGA GTACACGCGCGATGAAAGTCATGGGTCTAATAGCTTGTTTGAAATAGTTCACATTATCTTAGAATCAATTCTGGCACTCA GAGGCTATTCACATAATGATTTCCAAACATGCTATAAGTGGTTTAATATTGTTGAGTTTTTATGTTTGAAATATTTTGAT TTGTTTTCATTTAAGGTTGCGATGTTTGGCGGGAGTAAAGGAAGCTCGATACAAAGGGATCTAACTAGGATTGCAAAAGC TGCAGATACTTCCTCTAGGGAAGGTGTGAGCCATCTATTGACAGGTAGTATCAGGAAGAGAGGAATTGCTTGTGATAATT ATCTAATCATCATGTAGGTCTTCTGAGATATTTCTTTATGGTTTTGCTGAATTATGTGAACATCAGTATTATTATGTGTT TTCGTCAATTGGTCTGGATTAGATAGATGGTAAGAAATGTACAAATGTGAGGTGATGTCTATGTGTGGGAGTGTTGGAGT AGCTGTGTAGTGTGTACTCTCTTGTGGTATGTATCTATTTTAACTTTATGATGAGGCATGTCATTTGTCAAATTAGTGTG CATTTTGGGATGTTATCGACTGTAATTCTGTAAAGTTGAGTTATTATTACATTCTAGTCTAGTGTAGAAAAACTGGATTT GGCTCCCCTAGAGTGAGAGATCACTTTAGAGAGTAAGTAAGTCATCATAACCATTGATTAAGAAATCAACGGTTGAGATT ATGATGATAAACTAGCACATGTAACAAACTATGCTATTCTTAAAATCTCAACAATTTATTTCTGAATCAGTAGTTGTAGT GACTTATGTTACTCTCTAAAATGAATCCCTCACTTAAGAGGAACTAAATCCAAAAGTCTCTAGTCTCGGACATTAATGTT TTGCATGAAAATTTATCTAACATTAAACTTTCACCATTTGTATGAGTTATTGTATTTGAAGTACTTTTTGCCATCTGACC TTCTGTGACAGAGACCATACAGGCTTTGGATCGGCATCCTAGTTACTCTATTGCAGGATATTCATCTGTATGTCCATTCC TTTTGCCAAGGCCAAATTGTAGTATCAGCTTGTAGGATAAGTTAACATGATGAATCAAAATTTTAAATTGTTATTCTTAA GAGGTTCTCGTTAATGTTGAAAAACTTTTGGCAGGTGGGTCAAAAGCAGAGTATGGAGGATGGGAAGAAATGCTATGATC AACTATCAAATGAAGAAAGGGGAAAATTTGATAAAGAGACATTAGTTAATTTGTTCAACGTAGAAAAGAGAAGCCAGAGT ATTAATGAGTTTATCAATGAGGACACATCGGTACATTTTTATTAATATTAAGCTTTTCTAAAATGAGCTTCAATTTGCTG GAATCCAGCTTGCAAAATGGTTGTTTTTTATGCGCCTTGATTTTTTTCCCTCCACTTCCATTTCAATTGCCGGGCAAGTT AGTGATTTTGTATCTAATATATCTGTATAGCTATAACCAAGACGATACTATGTTGCAGTTGAATGTAAAGGAAAGTACAA CTGAATCACAGAAATTTGAAGAAGAGGAACTTCTCAATGGGCTTGGTGACGAGTACATAGTGGTATGGTGTGATCTCATT ATCCATATTCTAAAATTTACTTGAATTTGTGCACCAGCTTAAACTTTCATTTCACTTCTAATTTCAACATTCCAACATTC CAACATTTTCAAGTATATCACTTTGATTGGTAGAATTTTGTATCAGTCAATACCACAATATTTCGTCAGTGTTGCAATAC TTTCTTGATATGAATGGGTGAAGCCTTCATATCTTTCCTAGGGGTTTATTATTGAGGGGTTAGGAAAGGATGCAATTATA TACTAATTAGAACCTTGACTGCACAATTATATACTAATTAGAACCATATGTTGCCTCATTAGAACTCATATGGTCCAATC TCAAAATTGAAGAATGGATCTATGTTTTGGATATCCATTAGCACCGATGCAAACAGAAGCAGCCCACATTTTAAGATAAA AATTGAATGAATATCTTCTTGTGGATTAAGATGATAGCTGGTTTATGTTACACTCAACTTGTATCCAAACACACGACAAT TATCTTTGACTATCTTTGTGGCTTATCACTTAAAAGCAAAAGGGGGGATTTTGATTCGTTCATTCTTACACTTTGAGATG TTCTTATATATGTCAGGTAACAATCTTGGTAGCTGCTAAAGGAGCACATAAGCTTCCTAACAATGGAGCTGAAGATTTGA AGAAAGCCTTACAAAAGCTTAGATCCATTCTCCTTCTCCCAAGCAAATTATTAGTAAGAGATCAAAGAGACATTCAGTTA ATCGATTTTTTTAAATTAGTGTCACTTCTTTATTAGTGTAACTGAAAACTTGAATTTCTTATAGGCTGGTGAGGTGTTAT GGACCCCACTAAAAGAGGGTGACACTCTTTCAGAACGGAAACTACTTGAAGACTACCCTCAATTAGCAGAATGTATGAAA AGCTTTATAGTTAAGAAACAGGAATAGAAGTATGAAACAAGTGGGCAATGCTTGATTATGTTGTGTTAAAATATTAGGCT ATATTAAGAATTTATTTTATAAATTACATTAGATTTCATTTTGATTCATTCAATGTTAATTTCATGTTTTTACACAAAAT ATATTCTCACTTAAAATTACAATGGTCCCTATTGTTCACATGGTTATATCACTGCATCATTTGTCATGGTCATTCTCGTG AATAAAATCTGATACATGTCATGCAGGTCCTTGATTCAAAGTGTTAATTTACC
CDS sequence (LotjaGi6g1v0048200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATTGAATGCAAAAATGGCCTTAAAACCCGTTTGTGCTATCGCTTCGATGCTTCTTGTGCTGTTGTTACTGGC ATGCAAACTCAACTTGGCTTCAGCCTCCTCAGGAGGCGTGATGGGAGGGAATTTCTTTGATTCTGATTCTTCCTCCTCCT CAGAATCATCCACGATTGATTCAGAGCCCCTGCATCGACGTGAAGAAGAAGCTCATTCTTCTCCTGGTGATGCTGATGGG CTTGGCTGGGGAACACACGGTGGAGTACTTATGTTTCTGATCTTCATATTTGGTGTGTTTTTTGTTGGATTTTGCAAAGA CACCGATGCAAATACTATTACTCTCTGCAAGCTTCAGGTTGCGATGTTTGGCGGGAGTAAAGGAAGCTCGATACAAAGGG ATCTAACTAGGATTGCAAAAGCTGCAGATACTTCCTCTAGGGAAGGTGTGAGCCATCTATTGACAGAGACCATACAGGCT TTGGATCGGCATCCTAGTTACTCTATTGCAGGATATTCATCTGTGGGTCAAAAGCAGAGTATGGAGGATGGGAAGAAATG CTATGATCAACTATCAAATGAAGAAAGGGGAAAATTTGATAAAGAGACATTAGTTAATTTGTTCAACGTAGAAAAGAGAA GCCAGAGTATTAATGAGTTTATCAATGAGGACACATCGTTGAATGTAAAGGAAAGTACAACTGAATCACAGAAATTTGAA GAAGAGGAACTTCTCAATGGGCTTGGTGACGAGTACATAGTGGTAACAATCTTGGTAGCTGCTAAAGGAGCACATAAGCT TCCTAACAATGGAGCTGAAGATTTGAAGAAAGCCTTACAAAAGCTTAGATCCATTCTCCTTCTCCCAAGCAAATTATTAG CTGGTGAGGTGTTATGGACCCCACTAAAAGAGGGTGACACTCTTTCAGAACGGAAACTACTTGAAGACTACCCTCAATTA GCAGAATGTATGAAAAGCTTTATAGTTAAGAAACAGGAATAG
Protein sequence (LotjaGi6g1v0048200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLNAKMALKPVCAIASMLLVLLLLACKLNLASASSGGVMGGNFFDSDSSSSSESSTIDSEPLHRREEEAHSSPGDADG LGWGTHGGVLMFLIFIFGVFFVGFCKDTDANTITLCKLQVAMFGGSKGSSIQRDLTRIAKAADTSSREGVSHLLTETIQA LDRHPSYSIAGYSSVGQKQSMEDGKKCYDQLSNEERGKFDKETLVNLFNVEKRSQSINEFINEDTSLNVKESTTESQKFE EEELLNGLGDEYIVVTILVAAKGAHKLPNNGAEDLKKALQKLRSILLLPSKLLAGEVLWTPLKEGDTLSERKLLEDYPQL AECMKSFIVKKQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 35 | 35 | - | – | |
| SignalP_EUK | 1 | 35 | 35 | - | – | |
| ProSiteProfiles | 1 | 28 | 28 | 5.0 | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PIRSF | 3 | 323 | 321 | 4.5E-63 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 13 | 28 | 16 | - | – | |
| PANTHER | 16 | 326 | 311 | 6.2E-123 | – | |
| PANTHER | 16 | 326 | 311 | 6.2E-123 | – | |
| Phobius | 29 | 35 | 7 | - | – | |
| Phobius | 36 | 82 | 47 | - | – | |
| MobiDBLite | 48 | 79 | 32 | - | – | |
| MobiDBLite | 60 | 75 | 16 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 83 | 105 | 23 | - | – | |
| Phobius | 106 | 333 | 228 | - | – | |
| Pfam | 113 | 322 | 210 | 1.6E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0048200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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