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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0048300 |
| Transcript ID | LotjaGi6g1v0048300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | myelin-associated oligodendrocyte basic protein; TAIR: AT1G54520.1 myelin-associated oligodendrocyte basic protein; Swiss-Prot: sp|A7Z7R1|SYY_BACVZ Tyrosine--tRNA ligase; TrEMBL-Plants: tr|I3SGW4|I3SGW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0048300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8818067..8821534) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTATTGAGTTGATACTTCTTCAGTCTGCAACGCATTGAGTGTGAAAATGGCGTTAAGACCTTCTAGTGCTATTGCTC TGTTGCTCCCTGTGCTGTTGTTACTAGCATGCAGACTCAACTTGGCTTTGGCCGCCTCAGGAGGCGTGATGGGAGGGGAT TTCTTTGATTCTGGTTCTTCCTTTGATTCTGGTTCTTCCTTTGATTCTGGTTCTTCCTTCGATTCATCCATTAGTGATCC AGACCCTTTCATGGTGTCGGGTCGGCCGTCGGGTAAAGAAGCCCTTTCTCCCAGTAGAGAAAGAGAACTCGAGTTTTTCA TTCTGAGTTGGATAATTTTGTTTGGTATACTTTTCCTTGCATATTGGTTATACATCCAAGAGAATACTAATACTCTCTGC AAGCTTCAGGTTGGTAACATTTGTTGCTCTGCTAACTCTTCTACTACTAGTAACATCATTACTTTGGTGTTTATGAGTGT ATAAATATTTTCTGTTAGATGTGACTTAGAGACATGGCTAAATAAATATTATTGAGGGTAGGGCAGCAATCCTAACCACT TTTAGGACGGAGTTAGCCTTTAACCCGAATTTAAGAAATTGGTTGCTACTTGCTAGTGGGTGGTTTGGTTTAATATTGTT ATTAGTGTAGGTATGACATTTTTCTGTGTTTTCTTTTTCATTTAAGGTTGCGGTGTTTGGTGGGAATAAGGGAAGCTCAG TACAAAGCGATCTAACTAGGATTGCCAAAGCTGCAGACACTTCCTCTCGGGAAGGTGTGAGCCATCTATTGATAGGTACT GTCAGAAATTGCAATATTTTAGACTTCTGAGATGTTTCTCTATGATTTTGTTGAACTTATGTGAATATCTGTTTTGATTA ATTGGTTTGGATTAGATAGATGATGAAAAATGTACAAATGTGAGGTGATGTCTATGTGTGGGTGTTGGAATAGTTGTGTA CTTTCTTCTCGTATATATTTTAATTTTTGGATGAGTCATGTCATTTGTGATATCAGTGTTTTTTATGGAAAGTTATTGTA TGTAATTCTGAAAATTTGGGTCGATTTGACTCCTCTAAAGTGAAACATTATTTGAGAGAGTAAAGCAAGTCATCATAACT ATTGATTGAGAAATCTAACGGTTGACATTCTGATAATATACTTGTACATGTGTAACTAAATATGGTGTTTGTAAAATCTC AACTAGAATGAATCACTCACTTAGAGGACCTAAATCCAAAAGTCTCTAATCTCGGATATTAATGTTCTGGTTTAAGATTT ATCTCTGTATGAGGCATTGTATTTGAAGTACTTCTTGCTCTCTGACTTTCTGTGACAGAGACAATAGAGGCTTTGGATAG GCAACCTAGTTCTCTTATTGCAGGATATTCATCTGTAAGTCAATTACTTCATTCCTTTTGGATGGAAACTGTTGTTTGAT AGGCAACCTAGTGACTTACTTATCAGTCGTTTGAAGTTAATATGATACATGTAAATTTTAGCACGGAAACTGTTATTGTT AAGAGGTTATCATTAATGATGATTTTTTTTTGGCAGGTTGATCTAATGAAGGATAGGGAGGGTGTGAAGAAATACTTCAA TCAACTATCAAATGAAGAAAGGGGAAAATTTGATGAAGTGACATTAGTAAAGAGATCCAGTGTTAATGTGTTTAGCAATG AAGACACATTGGTACAGTTTTTTTTATTATTATTAAGCTTTTCTTTCTAAACTGAGCTTCAATTTGTTGGAATCCAGCAT GCAGAATGGTTATTTTTATGCGCCTTGATTTTTTTTCTTTCTCCACTTCCGTTTTAATTGTTGGGCAAGTTAGTGATTTT GCATCTGATAAGCTATAACAAAGTGATACTATGTTGCAGTGGAATGCAAAGGAAAGTATAAATGTACCACAGAAACTTGA AGAGGAACTTCTGAATGGGTCTGGCAACGAGTACATAGCGGTATGGAATGATCTCATTATCCATAGATTTCTAAACTTCA CTTGAATTTGTGCACCAGCTTAAAATTTCGTTGCACTACTAATTTCAACATTCCAACATTTTCAAGTCAATCACAGTGAT CAGAGAATTTTGAAGCATTCATTTCTTTCCTAGGGGGTTTACTATTGAGGCTATTTTGAAGCTATTTTTTATGCACCTTA AAAAAAATCTCCACTTCCATTTAATTGTTGGGCATGTTGGTGATTTTGCATCTAATATATCTATAGAGCTATAACCAAGT GATACTATGTTGCAGTTGGATATAAAGGAAAGTGCAGATGAATCACAGAAATTTGAAGAAGAGGAACTTCTCAAAGTGTT TGGTAACGAGTACATAGTGGTATGGTGTGATCTCATTATCCATAGGTTTCTAAACTTTACTTGAATTATGCACCAGCTTA AACTTTCATTTCACTTCTAATTCAAACATTCCAACATTTTCAAGTCCATCACTTTGATTGTTGCAAGCTTTCTTTGATAT GAATGAGTGAATCCACCAATGGATTGATCTCTTTCCAAATGGTTTATATTGAGGGACATGTCATGGGAAAAGATGCAAGT CTCTTTCTTTCTTGGTTCCCTTGACTGTATAATTAAATACTAATTAGAGGCATATGTGACCTCATTAGAACACATAATCT CAAAATTGAATGATTGGATATCAGTAAGCACTAATGCAAACAAACATTAGCACACATTTTAAGATAAAAAGTGAATGAAG CTCTTCTTATGGATTGAAATAGCTCCTTTTTGCTACACTTAACATGTATCCAAACTCACACTATCTTGGTGGCTTAACAC TTAAGAACAAAAGGGGCGAAATTTTGATTAGTGTATTCTTATGCTTTGAGATGTACTTGTCTATGTCAGGTAACAATCTT GGTAGCTGCTAAAGGAACACATAAGCTTCCTAACAACAATGGAGCTGAAGATTTGAAGAAAGCCTTACAAAAGCTTAGAT CCATTCTCCTTCTCCCAAGCAAATTATTAGTAAGAGATCAAAGAGACATTCAGTTAATCGATTTTTACCCTTAAATTAGT GCCACTTCTTCTATACTGTAACTGAAAATTTGACTTTAATTTCTTATAGGCTGGTGAGGTTTTATGGACGCCACAAAAAG AGGATGAAAGTCTTCCAGGACGGAAACTACTTAAAGACTACCCTCATTTAGTAGAGTCTATGAAAAGCTTTAGGGTTAAG AAAGAGGAATAGAACAAGTGGGCAATGCTTGATTATGATTTGTGCTAAATTGTTTGCCTAACATTTTCCCTTGAGGTTTT AAAATCCTACGATGACTTCCACATTTATAAATTTTAATTTATCAACGTTCTTCTCTTGATATTACTAGTATATTTTATAA ATTACATCAGATTTCATTCAATACTTATTTCATTTTTTACATATTATTTTGATCTATGACGAATGTGCTTACTCGTTCGG AAAACTGTAGTTGTATTTTCGAACAAAT
CDS sequence (LotjaGi6g1v0048300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTAAGACCTTCTAGTGCTATTGCTCTGTTGCTCCCTGTGCTGTTGTTACTAGCATGCAGACTCAACTTGGCTTT GGCCGCCTCAGGAGGCGTGATGGGAGGGGATTTCTTTGATTCTGGTTCTTCCTTTGATTCTGGTTCTTCCTTTGATTCTG GTTCTTCCTTCGATTCATCCATTAGTGATCCAGACCCTTTCATGGTGTCGGGTCGGCCGTCGGGTAAAGAAGCCCTTTCT CCCAGTAGAGAAAGAGAACTCGAGTTTTTCATTCTGAGTTGGATAATTTTGTTTGGTATACTTTTCCTTGCATATTGGTT ATACATCCAAGAGAATACTAATACTCTCTGCAAGCTTCAGGTTGCGGTGTTTGGTGGGAATAAGGGAAGCTCAGTACAAA GCGATCTAACTAGGATTGCCAAAGCTGCAGACACTTCCTCTCGGGAAGGTGTGAGCCATCTATTGATAGAGACAATAGAG GCTTTGGATAGGCAACCTAGTTCTCTTATTGCAGGATATTCATCTGTTGATCTAATGAAGGATAGGGAGGGTGTGAAGAA ATACTTCAATCAACTATCAAATGAAGAAAGGGGAAAATTTGATGAAGTGACATTAGTAAAGAGATCCAGTGTTAATGTGT TTAGCAATGAAGACACATTGTGGAATGCAAAGGAAAGTATAAATGTACCACAGAAACTTGAAGAGGAACTTCTGAATGGG TCTGGCAACGAGTACATAGCGTTGGATATAAAGGAAAGTGCAGATGAATCACAGAAATTTGAAGAAGAGGAACTTCTCAA AGTGTTTGGTAACGAGTACATAGTGGTAACAATCTTGGTAGCTGCTAAAGGAACACATAAGCTTCCTAACAACAATGGAG CTGAAGATTTGAAGAAAGCCTTACAAAAGCTTAGATCCATTCTCCTTCTCCCAAGCAAATTATTAGCTGGTGAGGTTTTA TGGACGCCACAAAAAGAGGATGAAAGTCTTCCAGGACGGAAACTACTTAAAGACTACCCTCATTTAGTAGAGTCTATGAA AAGCTTTAGGGTTAAGAAAGAGGAATAG
Protein sequence (LotjaGi6g1v0048300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRPSSAIALLLPVLLLLACRLNLALAASGGVMGGDFFDSGSSFDSGSSFDSGSSFDSSISDPDPFMVSGRPSGKEALS PSRERELEFFILSWIILFGILFLAYWLYIQENTNTLCKLQVAVFGGNKGSSVQSDLTRIAKAADTSSREGVSHLLIETIE ALDRQPSSLIAGYSSVDLMKDREGVKKYFNQLSNEERGKFDEVTLVKRSSVNVFSNEDTLWNAKESINVPQKLEEELLNG SGNEYIALDIKESADESQKFEEEELLKVFGNEYIVVTILVAAKGTHKLPNNNGAEDLKKALQKLRSILLLPSKLLAGEVL WTPQKEDESLPGRKLLKDYPHLVESMKSFRVKKEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| ProSiteProfiles | 1 | 21 | 21 | 5.0 | – | |
| PANTHER | 6 | 348 | 343 | 2.0E-91 | – | |
| PANTHER | 6 | 348 | 343 | 2.0E-91 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 28 | 9 | - | – | |
| Phobius | 29 | 88 | 60 | - | – | |
| Phobius | 89 | 108 | 20 | - | – | |
| TMHMM | 90 | 109 | 20 | - | – | |
| Phobius | 109 | 355 | 247 | - | – | |
| Pfam | 115 | 343 | 229 | 1.4E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0048300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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