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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0050800 |
| Transcript ID | LotjaGi6g1v0050800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT5G45130.1 Ras small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|Q40209|Q40209_LOTJA RAB5A; Found in the gene: LotjaGi6g1v0050800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9115157..9120677) extracted from Lotus japonicus Gifu genome v1.2.
CCGACAGAAATCAAATATAATTTTTTCAATCTTTTGTGACTTTTGTTATTAAGTTTTCAGTTTTTGAGATAAGTGATAAG TATAAGAAAAAGTATAAATATAAAGAGTGAAAAAGAAAGAGTGCAAAAGAAAAGAGAAAGAAAGAAGACAAAGAAGAAGT AAAAGCATATAAAACGATTGCGTTTTGATACAGAAGGTAGCGAAGAAACCCACCGTAAGCGAAAAGCAATAGAATTCAGA AACGAAGACTCTCTTCTCTTCTCTGTTTGGATTGATTTGATCATTCCGATCTTCAATCTCTTCGTATTGATTGGGTCCTC GTTTCTCTCTTCCGATCGATCCAATTCTCTTCACATGGCTACGATCGGGCACAACAATCTCAATGCTAAATTGGTGGGTT CACGCTTTTCGATTTCCTCTGTTTTTTTGATTCCGATTGATTGCGCCTTCTGACTCTGTTTTTCACCAGGTTCTCCTCGG GGATATGGGTGCTGGAAAATCCAGCCTTGTTTTGCGCTTTGTCAAGGGTCAATTTCTCGAATTTCAGGTTATTTTTCCAA CCAATTTTTCATTATTATTGTTGTTATTTTGATTTCTTCGTTTTGATTGGAAAATTCTTCAGAGTTAGAGGTTTTTGTTG GGTTTGTTGTGCATGAAGAATATTCCTTGAATTTCATGTGGTTTATCACAAGCGTGTGTTGAGTTTAGCTAATTTATGAG GTTATGTTGTTGCAAATTAACTTTTTTTCTTAAAAATTACGATGGAGAATTTGAGTACTTAGCTTAATATGATCATGAAT TTTATTGAGGTGGTAGTGATTAGTGAGAGTAAGTTGTTACTTGTTAGAATTTTGGAGCTATACTTGAAGGATTGATGTGG GGGGGGGGGGGGGGGAGGGAAAAGATCCTACTCCTCTCATGTCATATTTATTGTGACTTTTAAACTACGCGTCCATCTCT GTCTTCATAAATATTCACAAAGTTCCACCTATTTAATATATATGAAGAATAGATTGAGATAGATACAAAATTTTAACATG ACAAGGTAATGAGAGAATCCTAATCCGGGAGGGAGATATCTTCTCTGAGTTCGTGTTCTTGTTGGGGATTTTGGGTTCTG ACCTCTGACCTCTGACTTCTGAGAGCTTTTATGTTGTGCCTAATGAGTCTTTAGATGAATTGAAAAATGGAGATTATATT CCTGAGTTATATGGTCTTCTGTGGTGGTGACAGGAATCAACAATAGGGGCGGCATTCTTTTCGCAGACTTTGGCAGTAAA CGATGCAACTGTTAAATTTGAGATTTGGGACACAGCGGGGCAAGAGAGGTACCATAGCTTGGCTCCCATGTATTACAGAG GCGCTGCTGCTGCTATCATTGTCTACGACATCACTAGCTCAGTATGTTATCTTTGCCTTTGTATATTTCTGAATACCTCT ATATTTGGTGTACATTGACTAATTTTTATTTTGACACGTAACTCAATGCTGCTAGTTTTTTCTTGTTTATATACTACATG TAAAGTTATGGTTCGTAAAAGGCTAAAAGCCAATTTGTACTGGCTGATAAGTGTCAAATTCACTATCAGTGTCAAATTCA CAATGGGAATGGTGAATCTTATACTTTTGAGGTTGAGAATTGAGATGTGTTCTGTTGAGTTATGTGGATGAGAAAGTGTT CTTTTGCTGTCTTTCTTAAATCCAGTAAATATATTCCTCGTAATTATCAATCCTGGATAGTGGCATGTAGCCACTGACGC CAAAACTGCTATAGTGCATAGCGGGATGGTTGCTACATTGTTGTTTTTCCATATATTTTATATATACTATATATGTATAT AGTAAACAAAAACAATAAGGACAAAAGAGGAACATTATATTTTGAAAAATCATAATTTTCCTAAAAGAGGAGTAGATAAC CGTGCTAGAAGTGTTCTTCCTTTTAATCTGTATATCTTTTTGTCTTCTGATCTGGCTGATGCTGTGCTTTTAACATTTTA ATTATCTATTTTTTTATAAGGTTTAATATGATTACTTCTTTTTTTCGCTTACCAGGATTCGTTTACACGAGCTAAGAAGT GGGTCCAAGAGCTTCAAAAGCAAGGTATTGACTTATTAGTTCTGAAGTTTTCTCATGTTTCTTTCTGAAGAGGAATAAAA ATTATAGATGGGAAAAGGAGATCTAACTATTTATTAACCATTTGCAAACTTCTATATGCAACCTATTTGCTAAGCATTCA TGTTTATAATTGAATGGCGCACATAATGCATGAGTTGATCTGAGAATGATTCTATACATGAGAAGATTGTGTACAATTAG GTAGATTCGAAATTCCATTTGTAGAGAGCGAGGGACCCACATTGAACTTGAGTTTATTTGACATATTACCGATGATATTT AATGGTTTAAACAAAATTTAATTATTTCACCCTATACATGTTACTTTAAGGGGTCAGCCGTGCCTATCAATTATATAAAA TCTAGATTAACATTTAATAGGTATTAATCCTTTTGTTCAAAAATAACACATGACTAGCAGCTTTGCACTGAAGTATTACA TCAAACATCTACTTCTCATGTTCTTATCTCTAGTCTCTCGTAATACAGGGTTTATGGTAGCTGTAGTTGTATAACTAGAA TCTCAAATACTGCATTCATTCTGATGTTGCAGGGAACCCTAACATGGTCATGGCTTTCGCTGGTAACAAATCTGACTTGG AAGATAAGAGAAAAGTGACTGCTGATGTAAGTGTTTTTGTTTTCCAGTATTTATTTTTATGCCATGTAAGTTAGTGATTG ATACGAGAATTATGATCTTTAACTATGGTCTGTTGTGCGCATAAATTATATAAAATAGAACAACAGAAGACGTTATGGGT TCTGGCCCTAAACAATAGATAGCAGAGCAGTGGGGATTGATATACCAATGAATTTTAGCAAAGAATTAAACTACAGGCTT AACAGACATTGTCTCCGTTGTTTGATTTGACTAATTGATTAGCTGTTCCATTGTTTTTGAATCTTCAAAGTATTCTAGAG GGTGGGGGATAAAATTCAAGGTTTTAAACTTGATGCAAATTGCAGAAAGTACTTTTTCATGTTAATGCTTCTTTTCTTCA TGAAAGTTGGATAAACTGTTTGACGTTATCAGTTTATCTATATTGATTCTTTTTTTATCCTGTGGGATAGTTTTACCATC TTGCTGAATTTCCTATGCCATTAAACTTCAATTTTGGCACAGAAGATGCTATAGTGTGTAATTAGCTACCATTTTGCGGC ATCTTTGGATGGTTGGTCGATTGCATATGTTTGTGTAGTTTTGTATTGCATACATCCAATATATTATCAATAATGACATT TCTTGGGCCTACCTGTTTATGGATTTTGCACCATTGTTTTTGCAGGAGGCACGTGTTTATGCTGAAGAAAATGGTCTGTT TTTCATGGAGACCTCTGCCAAAACTGCAGCCAATGTTAATGATGTATTTTATGAAATAGGTGAGAGTCCATTCCTATAAA ATATGCATTTGGGAGGTGTGCTAGAAACACTATCTTTTCCACACACACTCTTATTGGTTGAAATTCATGAGTCCTAGTAA ATAAGGAGTCGGGCCCGGGGTATTGGGATTGGAACCCATATGATTTAGTGGATTCTGTATGAATCTCAACAAATAAGTGT GTTGGAATAAGAGTGTTTAAGAGTGTGTTGCTAGCATTTCTCATACTTTAGGTAGCTTACTGGGAATTTAGTTTCTTATT TTTAAGTTGAATTGCTATTTAAAAAAGTTAAAAGGGAACATCACTCTGAAAAGGTGGGAAGACCCGGGAAATTCTCCTTG AGGGAATTGACAAAATATCTGTTCCCACTCCGCAGGCCAAGACATCGCTATTATGTTCTCGGTCGGGTTATCTTTAAAAT TCATGAAATCTTACATAAATAGTTCAAGACTGTGTTCAGTCTTGGGTTTAGTTTTGTGTAGGAAGTCCTATAATCATGGC TTTAGAGAAAGACACAAGCTTTTGCCAAAATCCATGGTTTTGAACTTTAACACCAAAATCAAACATGCAGTGTGACGTGG TTGTCTGAACCCACTCATGACATATCATATTCTTGAAACTTGCATTTCTTGTACCTGTCTTGGTCTATATAATGTTACCA AATATTTTCTCTTTTTTCCGTTGGCGAGGGAGAGAATGTTTGCATTTACGTTTAACCTTTACCTGATTCCACATTTAGCC AACGATCCACAAAACCTCCTTTCACATTTTCTATTGAAAAATGTGTTTTCTCCATTGGTTTTCTATGGGAATGTGGGATG ATGGGATACAAACGGAAATAGCCAATTGACTTTCTGAGGCATAAAAGCCAACGGATGTGAGGGGTTGGATTAGGCAAAAG CTGGTTTGCATTCTCGTTACATTTATACAAACACACACTTAGATTATTTATATTCCCCACCTAGTGGGCTTCTTCCACTT CATTTTTGTGGCACATGAAATATTATTTACTTAGTTACTCTTGATTACGTTGCCTGACTTACAATTGCTTGTGTAAACAG CCAAGAGGTTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGATAGACCCGCCGAAGGAGCTAGG GCTTCATCATGTTGTTCATAAAGTATTTGAGCTGTATTTACTCCCCTGAAACATTAATCTTGTTTTATGTGGTTGTTATG TGCTGCACACTTTGCTGTCACTGTTATGTGGAGCTCCATCTAGTGTATGTGCTTCGTTGGTAATGAATGCAATTTACAAA CAGAACTTGATGGTTCAAAATATATACCTTGGATGTGTACTATGAGTCTCTTGATTTGTCTGGGTATGTGGGGTGAAAAG GTGCATGTTTCTAGATAAGATTAGCGATTCTTTGCATTCCCTCTTCCCCTCTTTTACAATCTTCTCAACTAAGAAGCATC AAGCATTTGTTGTTTAATTTTAATTTATTATAGCATTTATTTAACATGATTTTAAATTTTCTAGATGGCATCTACTCACT ACTGCAATTATGGGTAACAATTTTTTTAAATAGTTTGCGTTAATAATAATTTCCACTAATTAAGAAGTCCCCTGTCAATT TCCCCTAATTCCGTCCCTGCGTGCTTATTCAAATTTACCTAAATTTGATGAAAAAAATTTATCTCAAAATTGAGGATAAG ACAATGTCTGATATGTTATTTTAGCTTGCTTAAAGCTTATTTGACGAGTTTAAAATCTGCTTAAAAGTATTTGGTAAAAG AGTTTATTTTAGTTGCTTTAAATTTTTCAATGAGCTACAGAGATAGCTTATAACTTAAAACTTAAAGCTTATTGAATTAG GTTTTGAGCTACCTGTTAAACTTTGATTCCTATTACCACCATTTTGAATTAGGTTTTCCTAATTGTGCTTTCCTCTCAGT GTCAATGAATTAGGCGTCGTTATTTATTGGGTTAAATGTGTTCTCCGTCCCTGAACTTTGAGCGAGATCTGATTTCCGTC C
CDS sequence (LotjaGi6g1v0050800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACGATCGGGCACAACAATCTCAATGCTAAATTGGTTCTCCTCGGGGATATGGGTGCTGGAAAATCCAGCCTTGT TTTGCGCTTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGCGGCATTCTTTTCGCAGACTTTGGCAG TAAACGATGCAACTGTTAAATTTGAGATTTGGGACACAGCGGGGCAAGAGAGGTACCATAGCTTGGCTCCCATGTATTAC AGAGGCGCTGCTGCTGCTATCATTGTCTACGACATCACTAGCTCAGATTCGTTTACACGAGCTAAGAAGTGGGTCCAAGA GCTTCAAAAGCAAGGGAACCCTAACATGGTCATGGCTTTCGCTGGTAACAAATCTGACTTGGAAGATAAGAGAAAAGTGA CTGCTGATGAGGCACGTGTTTATGCTGAAGAAAATGGTCTGTTTTTCATGGAGACCTCTGCCAAAACTGCAGCCAATGTT AATGATGTATTTTATGAAATAGCCAAGAGGTTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGA TAGACCCGCCGAAGGAGCTAGGGCTTCATCATGTTGTTCATAA
Protein sequence (LotjaGi6g1v0050800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY RGAAAAIIVYDITSSDSFTRAKKWVQELQKQGNPNMVMAFAGNKSDLEDKRKVTADEARVYAEENGLFFMETSAKTAANV NDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARASSCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 199 | 194 | 9.1E-63 | – | |
| ProSiteProfiles | 6 | 200 | 195 | 32.497 | – | |
| SUPERFAMILY | 8 | 176 | 169 | 4.32E-54 | ||
| SMART | 8 | 174 | 167 | 5.2E-29 | – | |
| PANTHER | 9 | 199 | 191 | 4.3E-97 | – | |
| PANTHER | 9 | 199 | 191 | 4.3E-97 | – | |
| CDD | 10 | 172 | 163 | 8.41037E-116 | – | |
| SMART | 11 | 174 | 164 | 7.2E-78 | – | |
| TIGRFAM | 11 | 167 | 157 | 5.5E-28 | ||
| PRINTS | 11 | 32 | 22 | 9.2E-36 | – | |
| Pfam | 12 | 171 | 160 | 3.1E-59 | ||
| SMART | 13 | 174 | 162 | 3.0E-10 | – | |
| SMART | 16 | 200 | 185 | 2.6E-6 | – | |
| PRINTS | 34 | 50 | 17 | 9.2E-36 | – | |
| PRINTS | 52 | 74 | 23 | 9.2E-36 | – | |
| PRINTS | 114 | 127 | 14 | 9.2E-36 | – | |
| PRINTS | 149 | 171 | 23 | 9.2E-36 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0050800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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