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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0050800 |
| Transcript ID | LotjaGi6g1v0050800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|Q40209|Q40209_LOTJA RAB5A; Found in the gene: LotjaGi6g1v0050800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9115511..9119817) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACGATCGGGCACAACAATCTCAATGCTAAATTGGTGGGTTCACGCTTTTCGATTTCCTCTGTTTTTTTGATTCC GATTGATTGCGCCTTCTGACTCTGTTTTTCACCAGGTTCTCCTCGGGGATATGGGTGCTGGAAAATCCAGCCTTGTTTTG CGCTTTGTCAAGGGTCAATTTCTCGAATTTCAGGTTATTTTTCCAACCAATTTTTCATTATTATTGTTGTTATTTTGATT TCTTCGTTTTGATTGGAAAATTCTTCAGAGTTAGAGGTTTTTGTTGGGTTTGTTGTGCATGAAGAATATTCCTTGAATTT CATGTGGTTTATCACAAGCGTGTGTTGAGTTTAGCTAATTTATGAGGTTATGTTGTTGCAAATTAACTTTTTTTCTTAAA AATTACGATGGAGAATTTGAGTACTTAGCTTAATATGATCATGAATTTTATTGAGGTGGTAGTGATTAGTGAGAGTAAGT TGTTACTTGTTAGAATTTTGGAGCTATACTTGAAGGATTGATGTGGGGGGGGGGGGGGGGGAGGGAAAAGATCCTACTCC TCTCATGTCATATTTATTGTGACTTTTAAACTACGCGTCCATCTCTGTCTTCATAAATATTCACAAAGTTCCACCTATTT AATATATATGAAGAATAGATTGAGATAGATACAAAATTTTAACATGACAAGGTAATGAGAGAATCCTAATCCGGGAGGGA GATATCTTCTCTGAGTTCGTGTTCTTGTTGGGGATTTTGGGTTCTGACCTCTGACCTCTGACTTCTGAGAGCTTTTATGT TGTGCCTAATGAGTCTTTAGATGAATTGAAAAATGGAGATTATATTCCTGAGTTATATGGTCTTCTGTGGTGGTGACAGG AATCAACAATAGGGGCGGCATTCTTTTCGCAGACTTTGGCAGTAAACGATGCAACTGTTAAATTTGAGATTTGGGACACA GCGGGGCAAGAGAGGTACCATAGCTTGGCTCCCATGTATTACAGAGGCGCTGCTGCTGCTATCATTGTCTACGACATCAC TAGCTCAGTATGTTATCTTTGCCTTTGTATATTTCTGAATACCTCTATATTTGGTGTACATTGACTAATTTTTATTTTGA CACGTAACTCAATGCTGCTAGTTTTTTCTTGTTTATATACTACATGTAAAGTTATGGTTCGTAAAAGGCTAAAAGCCAAT TTGTACTGGCTGATAAGTGTCAAATTCACTATCAGTGTCAAATTCACAATGGGAATGGTGAATCTTATACTTTTGAGGTT GAGAATTGAGATGTGTTCTGTTGAGTTATGTGGATGAGAAAGTGTTCTTTTGCTGTCTTTCTTAAATCCAGTAAATATAT TCCTCGTAATTATCAATCCTGGATAGTGGCATGTAGCCACTGACGCCAAAACTGCTATAGTGCATAGCGGGATGGTTGCT ACATTGTTGTTTTTCCATATATTTTATATATACTATATATGTATATAGTAAACAAAAACAATAAGGACAAAAGAGGAACA TTATATTTTGAAAAATCATAATTTTCCTAAAAGAGGAGTAGATAACCGTGCTAGAAGTGTTCTTCCTTTTAATCTGTATA TCTTTTTGTCTTCTGATCTGGCTGATGCTGTGCTTTTAACATTTTAATTATCTATTTTTTTATAAGGTTTAATATGATTA CTTCTTTTTTTCGCTTACCAGGATTCGTTTACACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGTATTGACTT ATTAGTTCTGAAGTTTTCTCATGTTTCTTTCTGAAGAGGAATAAAAATTATAGATGGGAAAAGGAGATCTAACTATTTAT TAACCATTTGCAAACTTCTATATGCAACCTATTTGCTAAGCATTCATGTTTATAATTGAATGGCGCACATAATGCATGAG TTGATCTGAGAATGATTCTATACATGAGAAGATTGTGTACAATTAGGTAGATTCGAAATTCCATTTGTAGAGAGCGAGGG ACCCACATTGAACTTGAGTTTATTTGACATATTACCGATGATATTTAATGGTTTAAACAAAATTTAATTATTTCACCCTA TACATGTTACTTTAAGGGGTCAGCCGTGCCTATCAATTATATAAAATCTAGATTAACATTTAATAGGTATTAATCCTTTT GTTCAAAAATAACACATGACTAGCAGCTTTGCACTGAAGTATTACATCAAACATCTACTTCTCATGTTCTTATCTCTAGT CTCTCGTAATACAGGGTTTATGGTAGCTGTAGTTGTATAACTAGAATCTCAAATACTGCATTCATTCTGATGTTGCAGGG AACCCTAACATGGTCATGGCTTTCGCTGGTAACAAATCTGACTTGGAAGATAAGAGAAAAGTGACTGCTGATGTAAGTGT TTTTGTTTTCCAGTATTTATTTTTATGCCATGTAAGTTAGTGATTGATACGAGAATTATGATCTTTAACTATGGTCTGTT GTGCGCATAAATTATATAAAATAGAACAACAGAAGACGTTATGGGTTCTGGCCCTAAACAATAGATAGCAGAGCAGTGGG GATTGATATACCAATGAATTTTAGCAAAGAATTAAACTACAGGCTTAACAGACATTGTCTCCGTTGTTTGATTTGACTAA TTGATTAGCTGTTCCATTGTTTTTGAATCTTCAAAGTATTCTAGAGGGTGGGGGATAAAATTCAAGGTTTTAAACTTGAT GCAAATTGCAGAAAGTACTTTTTCATGTTAATGCTTCTTTTCTTCATGAAAGTTGGATAAACTGTTTGACGTTATCAGTT TATCTATATTGATTCTTTTTTTATCCTGTGGGATAGTTTTACCATCTTGCTGAATTTCCTATGCCATTAAACTTCAATTT TGGCACAGAAGATGCTATAGTGTGTAATTAGCTACCATTTTGCGGCATCTTTGGATGGTTGGTCGATTGCATATGTTTGT GTAGTTTTGTATTGCATACATCCAATATATTATCAATAATGACATTTCTTGGGCCTACCTGTTTATGGATTTTGCACCAT TGTTTTTGCAGGAGGCACGTGTTTATGCTGAAGAAAATGGTCTGTTTTTCATGGAGACCTCTGCCAAAACTGCAGCCAAT GTTAATGATGTATTTTATGAAATAGGTGAGAGTCCATTCCTATAAAATATGCATTTGGGAGGTGTGCTAGAAACACTATC TTTTCCACACACACTCTTATTGGTTGAAATTCATGAGTCCTAGTAAATAAGGAGTCGGGCCCGGGGTATTGGGATTGGAA CCCATATGATTTAGTGGATTCTGTATGAATCTCAACAAATAAGTGTGTTGGAATAAGAGTGTTTAAGAGTGTGTTGCTAG CATTTCTCATACTTTAGGTAGCTTACTGGGAATTTAGTTTCTTATTTTTAAGTTGAATTGCTATTTAAAAAAGTTAAAAG GGAACATCACTCTGAAAAGGTGGGAAGACCCGGGAAATTCTCCTTGAGGGAATTGACAAAATATCTGTTCCCACTCCGCA GGCCAAGACATCGCTATTATGTTCTCGGTCGGGTTATCTTTAAAATTCATGAAATCTTACATAAATAGTTCAAGACTGTG TTCAGTCTTGGGTTTAGTTTTGTGTAGGAAGTCCTATAATCATGGCTTTAGAGAAAGACACAAGCTTTTGCCAAAATCCA TGGTTTTGAACTTTAACACCAAAATCAAACATGCAGTGTGACGTGGTTGTCTGAACCCACTCATGACATATCATATTCTT GAAACTTGCATTTCTTGTACCTGTCTTGGTCTATATAATGTTACCAAATATTTTCTCTTTTTTCCGTTGGCGAGGGAGAG AATGTTTGCATTTACGTTTAACCTTTACCTGATTCCACATTTAGCCAACGATCCACAAAACCTCCTTTCACATTTTCTAT TGAAAAATGTGTTTTCTCCATTGGTTTTCTATGGGAATGTGGGATGATGGGATACAAACGGAAATAGCCAATTGACTTTC TGAGGCATAAAAGCCAACGGATGTGAGGGGTTGGATTAGGCAAAAGCTGGTTTGCATTCTCGTTACATTTATACAAACAC ACACTTAGATTATTTATATTCCCCACCTAGTGGGCTTCTTCCACTTCATTTTTGTGGCACATGAAATATTATTTACTTAG TTACTCTTGATTACGTTGCCTGACTTACAATTGCTTGTGTAAACAGCCAAGAGGTTACCAAGGGCTCAGCCAGCTCAAAA CCCAGCAGGGATGGTTCTTGTTGATAGACCCGCCGAAGGAGCTAGGGCTTCATCATGTTGTTCATAA
CDS sequence (LotjaGi6g1v0050800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTGGAAAATCCAGCCTTGTTTTGCGCTTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGC GGCATTCTTTTCGCAGACTTTGGCAGTAAACGATGCAACTGTTAAATTTGAGATTTGGGACACAGCGGGGCAAGAGAGGT ACCATAGCTTGGCTCCCATGTATTACAGAGGCGCTGCTGCTGCTATCATTGTCTACGACATCACTAGCTCAGATTCGTTT ACACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAGCAAGGGAACCCTAACATGGTCATGGCTTTCGCTGGTAACAAATC TGACTTGGAAGATAAGAGAAAAGTGACTGCTGATGAGGCACGTGTTTATGCTGAAGAAAATGGTCTGTTTTTCATGGAGA CCTCTGCCAAAACTGCAGCCAATGTTAATGATGTATTTTATGAAATAGCCAAGAGGTTACCAAGGGCTCAGCCAGCTCAA AACCCAGCAGGGATGGTTCTTGTTGATAGACCCGCCGAAGGAGCTAGGGCTTCATCATGTTGTTCATAA
Protein sequence (LotjaGi6g1v0050800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSF TRAKKWVQELQKQGNPNMVMAFAGNKSDLEDKRKVTADEARVYAEENGLFFMETSAKTAANVNDVFYEIAKRLPRAQPAQ NPAGMVLVDRPAEGARASSCCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 154 | 154 | 9.26388E-109 | – | |
| Gene3D | 1 | 181 | 181 | 2.1E-58 | – | |
| ProSiteProfiles | 1 | 182 | 182 | 30.797 | – | |
| PANTHER | 1 | 181 | 181 | 4.0E-92 | – | |
| PANTHER | 1 | 181 | 181 | 4.0E-92 | – | |
| SMART | 1 | 156 | 156 | 2.9E-69 | – | |
| SMART | 2 | 182 | 181 | 2.4E-5 | – | |
| TIGRFAM | 2 | 149 | 148 | 7.7E-25 | ||
| Pfam | 2 | 153 | 152 | 5.6E-55 | ||
| SUPERFAMILY | 2 | 158 | 157 | 1.08E-49 | ||
| SMART | 2 | 156 | 155 | 1.4E-21 | – | |
| SMART | 4 | 156 | 153 | 1.3E-8 | – | |
| PRINTS | 16 | 32 | 17 | 1.3E-24 | – | |
| PRINTS | 34 | 56 | 23 | 1.3E-24 | – | |
| PRINTS | 96 | 109 | 14 | 1.3E-24 | – | |
| PRINTS | 131 | 153 | 23 | 1.3E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0050800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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