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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0051900 |
| Transcript ID | LotjaGi6g1v0051900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G17300.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4KGY6|RVE1_ARATH Protein REVEILLE 1; TrEMBL-Plants: tr|A0A0B2PHH5|A0A0B2PHH5_GLYSO Myb-like protein G; Found in the gene: LotjaGi6g1v0051900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9269706..9273415) extracted from Lotus japonicus Gifu genome v1.2.
TCCCCAACAACTCTCGACCTGAACCACACGATTCCTTAGAATTCTCGCGATTTCCATGTCGGAAAAAAAAAACACTTTTT TTAATCTCACTTTTTCGACCAGAAAACAGAAAAATTCAACATCTGACGTGTCAACACTTCCTTTTTCTTCCCTTCACTGT CTATAGTTCTCTTCTTATTCATTCTCTTCTCACTTTTGTTGTAACCTAACAAAGCTTTCAACTTTTTCTCTCACGTTTCA TACCAACAAACAATTTTCTCCAATTAGAGAAAGGGGTAGAACTTAGAACAAGTAGAAGCTTGAATCAACGGTGAGGATTC ATTTGGAGAGGTTTTTGCAGGATTGAAATAACAACCTCTTGTTTTCTGGGATTCCACTCCATTTTCTATCTTGAAAAAAG CTGTTATTATGCACTTGATTAAGCATGATCAATGGATCTTATAGATTGAGAGGGTTCTGTGATTCTGAGCTGAAGATTAG TGTTTGGTGAAGTGGAGAGTCAAGGTAGCTTTTGTGTCATAAATTAATTACCTTTTGGATCAAGAAGGTGGGTCCAATTT TGTGAAAAAAGTTGTTGATTCTGTTTCTAGCTTTCTAGTGGAGAGGTTGAAGGCTAGGACCTGAAATTTGTAGATCTGTG TGTGAGGGAGGAGAGTGATATTCAGTGGTGAAGTTGAAGAAAGTTTGGCACTTGTGAAGAGGGAGAAGAAGATTTTCACC AGTGCTTTCTGCAGCTATGGCGATTCAAGTATGTAATATATAAGTTTTTGCTGTGTTTTTCTTTAATATAAACTATTTGA TATTGTACTTGCTTTAATTGTATTGGGTTACTGAGATTGTGGTTAAATTTTGATTGTATTTTTTATGGATTTGCTCTGAT TTCTTGCTATATATTCCCATGGCTTGTGTGGGGTATGCTTGTTTTTGTAGAAACGAGAGATGAAAAGAGAGAACTTGGTT TACCTCTTTAAAATGTCCAAAATGAATATATTTCAGATATGGGTTAGCAGCAGGGATCCTGCTTAAAGGATTATGATTAA CCTTGTTCTTGTCTTCATCAATGGACTAATGAAGTATTTACTGGTGTTTTATTTTTCAAATATTTCTAAGGGGTCATTTC TTGTTGAATTTATGGTTATTGATCATTTTTCAAATAATTTCTTGAAAGATGAGTTATTCCTTGGTGTGGATAACTGATTT GTGGTGTAGTAAGCGCTTATAGTTAGATTATAGTAAAATCTTGGTTCTCCGAAATGTTTACAATTGCATTATATCTTATT GCTCTCTATCTAATGCAGGATCAAAATGGATTTACTAGATCACTAGTTAGCCCTCCAGTAGGAAGTGGAGTTGTATCTTT GAGTTCTGGATCGCATTCTGCAACTCATATTCAACTCGATGATCCGTTATCTTGCGGGAATGACTATGCTCTGAAGGTTC ACCATAGACTCTTGTGCATTTGTGTCACTGGCATATATAAATGATTGATTTTCACCTCTTGGAGTCATCTTTGTTTTGAT CAATTTTCTTTCTTCTTCAACAGGCAAGGAAACCATATACCATTACTAAACAGAGAGAGAGGTGGACAGATGAAGAACAT AACAAGTTCCTTGAAGCTTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGGTATAATTAGTTTACAACTTCATGT CTTAAGCAACTATGCTATTAGGAGCTAAAAAATATATATGAATAAGTAATGAAGGAGTATGATTGTGCTTGGTCTAAGTT TTGAAATGCTTATTTTCACCACAGAACATATTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTT TCTAAGGTTTACTGCTCTATTTCAGAAATCGTTCTCTGCCGCATTTTAATACATATACCATGATTCATATATCAACATAT GTTATGATTTTCATGACCATAGGATATCCAACGTGCTAACCTCATTGAGATTGAAGGGTTCATAGATTTCTCGTTGAATC CACTCTAACTCCTTTAACTTTACAACAGGTTCTTCGTGACTCTAGTGGGAAAATTACGAGCACTGAGGATTCAATTGAGA TTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCTCGTAAGCTTGCTACCCCTAGAAAAGAAATTTCGATC CCTAGAAAAGAGATTTCGATCCCAGAAAAGAGAATGAAGTCGAATTCTCTGAAGTCATTGGATTTTGATCAAGAAAACCA ATCCCCCAAATCAGTGCTATCTGCAGTTGGTTCCGAAAGCCTTGGGTCCTCTGATTCAGACACACCAAATGGAAGTTTAT CCCCGGTATCATCCATTAGTCGTGTCCACACAAGTGGTTTTACACTTGCTGAATCCAGAACACCATGTGAGGAAGCTTCA TTGAATGCTGATTCCGTTCATGATGAGAAAACTCTTATGGTACGGCCTGGTCCATCTTCATTTTATTTTCTACAATGTCA ATCACTAGAACTGCTTGAGAAAACGATATATGATACTCTTCTGCTTGATTTTTCAGAAATTCGAAAGTTTTTCTGCGAAA GAAGATGCAGCAGAAGAATCATCCAGTCGAACACTCAAACTTTTTGGGACAACTCTATTTGTAACTGATGAGGCATGCAA ACCATCTTCTCCAATAATTGAGGCATGCAAACCAATACCTCTCGACGTACGTGCCCATTGCCTTAGCGAGGGGCATACAA AATTGGAACTTGTTGGCAACAGTGCACTAAATGAAACATCAACCATATCCCAACTAAGGGTGAGAGTGAGAACTGCATCA TGTGGGAAAGGTTTTGTGCCATATAAAAGGTGCATGCCACAGACCGAAAACCAATCTTCATCTGTAACAGCTGATGACAG AGAAGAGCAATGCATCCAACTTTCATTATAGCTGACCAGAATGCGTTTTTCTTCAAAGCAGTTTTCCCTTTGAGATAGAC TACTAGAATGTTTGGATCATCGGTCCTTTTATCATACTTAATTTTGAAATCCAGAAGCTACTGATTCTGACTTCAGAACG TAGAAGGTTTCCAAACATTGAGCTACAGCTGTTTCAACTTGAGAGGGAGGGAGGAGGAAAAAAGGGGGAGCTGAAAATTT TGACATTTCTGAAGCGTTGTAAAGCTGTTCAAACTTCAAATCCAGCAACCTGCCTTTTGTATATTTTTACATTTTCAACT GTGAATTGTCTAGTGGTTTTTGTTTTTCAACTTTCTCCTCAGTTGCAGAAATGCTAGTGACACTTTTCACAGATTCTTTT CAACACACCAAATATGGAATGAGACTTGCATGATGACTGATGAGTGTGTTGAAGAAAGTTTGTTGAATATGATGGAATTA CTCCCAACATTGCTTCTTTTTGTGGATTTAGAGAGGGAGAATCATTGGCAGCGGACATATTTGGGGGCAGAATAAAACCT TGGGAGTGAATGTTGTATTGGAAGAATAATGTTATTAATATACAATGTTATTAATTGCGGATGAATGGCGGATTATGGAA AAAAGCTAAAACAAAACAACAAATAAATAGAACTAACAACTTATGTTATCAAATATACCTCAGTAGTCAACATCATAGAT ACATAAGTATCACACATAAGTTTAGTAGATAGATTTATTTAATTTTCATCAAACATTACAAAGAGTTCAATACTTCAATT CCTAAATAACTAATCATCCTCATTACATAT
CDS sequence (LotjaGi6g1v0051900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTCAAGATCAAAATGGATTTACTAGATCACTAGTTAGCCCTCCAGTAGGAAGTGGAGTTGTATCTTTGAGTTC TGGATCGCATTCTGCAACTCATATTCAACTCGATGATCCGTTATCTTGCGGGAATGACTATGCTCTGAAGGCAAGGAAAC CATATACCATTACTAAACAGAGAGAGAGGTGGACAGATGAAGAACATAACAAGTTCCTTGAAGCTTTAAAGCTGTATGGC CGGGCCTGGCGACGCATTGAAGAACATATTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTC TAAGGTTCTTCGTGACTCTAGTGGGAAAATTACGAGCACTGAGGATTCAATTGAGATTCCTCCTCCAAGACCAAAACGAA AGCCGATGCATCCTTACCCTCGTAAGCTTGCTACCCCTAGAAAAGAAATTTCGATCCCTAGAAAAGAGATTTCGATCCCA GAAAAGAGAATGAAGTCGAATTCTCTGAAGTCATTGGATTTTGATCAAGAAAACCAATCCCCCAAATCAGTGCTATCTGC AGTTGGTTCCGAAAGCCTTGGGTCCTCTGATTCAGACACACCAAATGGAAGTTTATCCCCGGTATCATCCATTAGTCGTG TCCACACAAGTGGTTTTACACTTGCTGAATCCAGAACACCATGTGAGGAAGCTTCATTGAATGCTGATTCCGTTCATGAT GAGAAAACTCTTATGAAATTCGAAAGTTTTTCTGCGAAAGAAGATGCAGCAGAAGAATCATCCAGTCGAACACTCAAACT TTTTGGGACAACTCTATTTGTAACTGATGAGGCATGCAAACCATCTTCTCCAATAATTGAGGCATGCAAACCAATACCTC TCGACGTACGTGCCCATTGCCTTAGCGAGGGGCATACAAAATTGGAACTTGTTGGCAACAGTGCACTAAATGAAACATCA ACCATATCCCAACTAAGGGTGAGAGTGAGAACTGCATCATGTGGGAAAGGTTTTGTGCCATATAAAAGGTGCATGCCACA GACCGAAAACCAATCTTCATCTGTAACAGCTGATGACAGAGAAGAGCAATGCATCCAACTTTCATTATAG
Protein sequence (LotjaGi6g1v0051900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIQDQNGFTRSLVSPPVGSGVVSLSSGSHSATHIQLDDPLSCGNDYALKARKPYTITKQRERWTDEEHNKFLEALKLYG RAWRRIEEHIGTKTAVQIRSHAQKFFSKVLRDSSGKITSTEDSIEIPPPRPKRKPMHPYPRKLATPRKEISIPRKEISIP EKRMKSNSLKSLDFDQENQSPKSVLSAVGSESLGSSDSDTPNGSLSPVSSISRVHTSGFTLAESRTPCEEASLNADSVHD EKTLMKFESFSAKEDAAEESSSRTLKLFGTTLFVTDEACKPSSPIIEACKPIPLDVRAHCLSEGHTKLELVGNSALNETS TISQLRVRVRTASCGKGFVPYKRCMPQTENQSSSVTADDREEQCIQLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 294 | 269 | 4.0E-107 | – | |
| PANTHER | 26 | 294 | 269 | 4.0E-107 | – | |
| SUPERFAMILY | 55 | 108 | 54 | 1.64E-16 | ||
| ProSiteProfiles | 56 | 110 | 55 | 21.145 | ||
| TIGRFAM | 59 | 108 | 50 | 8.8E-17 | ||
| SMART | 60 | 108 | 49 | 7.1E-13 | ||
| Pfam | 61 | 104 | 44 | 3.4E-13 | ||
| Gene3D | 62 | 110 | 49 | 3.7E-17 | – | |
| CDD | 63 | 106 | 44 | 1.0989E-10 | ||
| MobiDBLite | 117 | 210 | 94 | - | – | |
| MobiDBLite | 142 | 170 | 29 | - | – | |
| MobiDBLite | 171 | 210 | 40 | - | – | |
| PANTHER | 328 | 368 | 41 | 4.0E-107 | – | |
| PANTHER | 328 | 368 | 41 | 4.0E-107 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0051900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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