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LotjaGi6g1v0053800.1

Overview

Field Value
Gene ID LotjaGi6g1v0053800
Transcript ID LotjaGi6g1v0053800.1
Lotus japonicus genome version Gifu v1.2
Description Importin-like protein; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O74476|IMB3_SCHPO Importin subunit beta-3; TrEMBL-Plants: tr|G7J8P5|G7J8P5_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi6g1v0053800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:9637206..9641850) extracted from Lotus japonicus Gifu genome v1.2.

GCACCCTATAACAATCAATCCTCACCAAAAATAGCCCTAGAGCTTTATATTTTTGGGAAAACAAAAAATAGAAAATCCCT CTTTGGGCCACACACACTCTCACACTTCACTTGAGTGAGCAGTGTTATATATTTGTCCTTACTCAGCCGCCATATCATCC TTGTTCACGTAAACCAAACACCACCAATCAAACACACACATCGTTTTCCTTTCCCTGCTGCAAGAACCCCAGAAACCCTC AACCTCAATTCTTCAATCTTCTTCGATTGATTGATTCTTTTCTCTTCTCTGAGAATGGAGTCATCAGATTCAGATCATCA ATTCCCACCGGAATTGCAATCCGAAGCGTATGAGGTTCTGAGTGCAAACGACAACACCGCCGTGGAAACCCTCTTCACCC AACTCCACTCCCCTGAACACCGATCACGCGCCGTCACATTCCTCCAATGCTGTAAACACCGCCACCCCGATCTCCTCTTC ATCAAGCTCTTCTACATCCTAACCGCAAGCCCTGACCCCACCACACGCGCCCACGCCGCACGCACGCTCCAATTCCTCGA CCCCACATATCTCTGGCCCAAACTCCGCCCTCTGGCCCAACAAAATCTCAGGGCCCATTTCCTCCAATTCATGGCCCAAG AACCCTCCCTCCTTGTCCTCCGCCCCGCCTCCCTCCTCCTCGCCGAAACCGTAACCGTTTTTCACAACCCCCACCGCCAA TGGCCGGAGATTCTCGATTTCCTCCTCTCCTCACTCTCCCTCCCCGACGATCGCCGCCGCGAGGTCGCGCTGTCCGTCCT CGCCGCGCTCAAAAACGACTGCCGCTCCGTCATCTCCGACTCCCTCCGTAACCGCCACAACGCGATCCACGGCCTCTACA AGTCGATTACAGATTGCTTGGAATCGGCGAGCAACGACATCAAGGTGTTGTCGTTTCGCGCGGTGGTGAATTTCGTTGAA TTGTTCTCGGAGCCGGAGCTGTTTCACGCGCTCCTCCGAGCGTTGATGCTCGCCGTGTTCGCGCTTCTCCGGGGAGGATT TGAGGGGAGCTATTTCAGAAGCGCGTTTGCGGAACTTGCGAGCATGGTGTCGCGTGAGCCGATTCTGCTGAGGCCGTACA TGTGCGACATGGTGCTCGACGCGCTTCAGATCGCGGAGAGCGGCGTCGCTAGGGGGACGCGGCGGTTGGTGATCGGGATG GTGGTTTCGATGGCGGAGGTGAGAGAGTGCGAGATGGTGCTGCCGAGTCTCCTGGATCAGACGGTGGTGAGATTGTTCGT CGTTTTGATGAGGATGGTGGTGCGCGTTGAGGAGGACGGTGGTGAATTGGGAGTGGAAGGTGTGAATGTTGGTGGTGGCG TGGCGGAATTCGGGATCAAGGGTTTGGAGAAGGTTTGCGCCGCCGTGGGAGGGATCAGAACCGTCGCTGTTGTTCGTGAA TTGCTGCCGCCTTATTTGGATGCGGCGGAGTGGAAGGAGCGCCATGCAGGGATTGAGATCCTCGGTGTGATAGCGAAACT GTTCTCTGATGAAATGGTGACGTCATCATAACTCCATGCATACTTTGATAGATAGTAGCACTTCTATTTATTAAAATTAA AATTAAAATTAAAAAGAGAAAAAAGCCATTACTAGACATACTTTAACTTGAGTAGAATGTTTTTTAGAAAGAAAGAAATG TAACTTGAGAAAATAATAGATGTGATTTATGATATAACCTTTTAGAGAAATAGAGAAAAGATAAAATTAATCTGAATTTA TTAATTGGAGATTTTAAAAATTGGGATTATGAAGAGTTTGTTAGCGGTGGCGCGCACATCATATTTACGCGCGTATTTTC TAAATGTTTAAATTACGTTTTCTAAAATAAAAACCTAAAATGTAAGAAATTAGAATTTAGTAAAATATTTTTTTTCTTGG TTTCTTAAAATGTTTATTCATTGGAAAAATCTATTACACATAAAAATATTTTTACATGCCATGTGTATATAGCATGTAGT AAAAGCCAATGATTTCTCCATGCTTTTAATTTTAATTTTCTAACACATATTTCTGCAGGTAATGATGGAAAATTTTCTAG AGGAAGTGGTCAATAGAGTTTTGAAGGTATTGCAAGACCCCCAAGTGCAAGTTCGGTTGGCAGCTTTTAATTTGATGCAG ATGCCCACAAATTTTGCGCAAGCTTTGCAAATCCTTTATGCTCAAAGGTTTGGGCATGCTTTTTCCATAGCACTTGTCCA TGAAGAGGAAAGTAATGTGAAGGTACTGATAAACATTCAATTAATGTTATCATACAGTGTCTCTTCTTTAGTTAATTCTC AAACTTGTTTTATTAATTAATAAGCTTGTGTTGCGTTTCTAGGAAGAAGCTGCAATAGCAATGCTATTCTTTCTGAAGAA CACACTTCCAGAAAGCTTAACATTGTTTAAGAGTGCAGATACTGCAATGGCCAATTTATTGTCATTGATTAAGGTAAAAA AAAATTAAAATGTTATATGTGCTGAAAGCTTCTGTGAGAAAGTTACTGATAATTTACCATTACTAATTTAGTAGGATTCT AGGAATTTGTTCATTCCTGCATTTTTTTGTCAGTTTTTCCTTCTGAATTTTCCAATAAAGCTCATTATTTTAATCCTTTG TTGTGATGTTTTCTGCCTTGTTCTTTCAGGGTTCAGAAAATTATAAGCTAAGAAGCATTGCTTTGTCAACTTTTAACACA ATTGCACTGCAGTCTCGTGAAGCACCTCAGAAGTAATCTTTTTGATCTTCATCTTTCCTTCTTGTATGTTTGATAATGTT ATAATTATGATTCATTTGTAAAATTTCTATTTGTTTTACTTTGTAGTTACTTTGGAGATTACCTTAAAATCTTAGTGGAT GCATGCACTGACAAAAATGCTGAAATCAAAGAGGTTTAATTTCTACCTTGTGCTAGCATATTGGTTACTTGATATAGTTG TTCTGTATGCAACTAATTACTAATTTTGTTTCCCTTTTTTCAGGAGGGAGCAAGGGGAATTAGAATTTATGCTGAGCTTG GAACACCGAAATTGAAGCCTTACATCCATAGTATGTTGATTGTTTGTTCCACAATTCTCTTACTGTGTTATTAGTAGTAA TTTCACAACTAAGATCGGTTTTCTGTCCTTCTCAGGGTTAATATCAGAACTCATCATGCTAATAAAAGATCCAAATCGAC CAGTTTCAGAGAATTCGAAAGCGCAAGATATTGCAGTTTCAGCTATTGGAAGAATTTGTGAATTCCATCGAGAATGCATT GATGGATCCCAGGTAACACTTTCCTTCTAATGTCCATTGTTATCTGATCTAAGTGTTAGAGGTTAATGATCTGTTTGCAG TTTGTTCAAATCTTTCTGTGAAAAAGATCATGTTCAGGCTTCATCTACATAGAAGTGAACTTTGCAATTTTCTGATCATG TTTTAACAGACAGATTTCACTCATAGTATTTGTTCATTAGAGATGACTGTTACAAAATGATGAAAATGAAAGTTACATTA TTTTATCCTCATATACTTGCAGCTTGTTCCTGCTTGGCTAAGTTTCTTGCCTCTTAAAAATGATTTGATTGAAGCCAAAT TGATGCATGAACAGCTCAGTTTGATGGTTTCAAGGTAAGAAATTGTTCAAATGAAATTTTCTGAAAATTATTAGTTTTTC AATACAGCAAGACTTAAGGTTTCATTAATGGAATGCTTCAATTGTTTACAGATTTGATAAGGATCTTTTCGGACCTGCTA ACCAGAACCTCGAAAAGATTATTACGGTATTTATTCAGGTGAGTTATCATCCACATGCATATCCTATTTGCTTATATCTT TCTCTGATTTTTTAGGTCAATTTGTAGATGCTTAAAATACCATGGAAAGCTGAATTTTATTAAGATTACCAAAGAAATTT GAATTATTTTTGTTTGTTCTACACTCTACACCATGCTGATTTCATATACGAAATTTGTTCTTTAATTTTATTGAATATTT ATTGATCACTTTATATGTTTTTTTTTATGGAATACATTTTTTTACTAGTTATGATTCATTCATACTTAAAAAAAAAATCA TTTCATTTTCACCTAATATTGTTTCTACTATATTTCTCATCTTTCTTGTCATATCACATATCACAAATTACATTTCATAC TTTATCTCACTTTTCTTTATACCTATTTTCTCATTCACCTCTTTTTAACTAAAATAAGGTGTCAATTTACAGGTCATTGA GGAGGGTGGCAACTTAGCTACACCTAAAACAATCAACCAGATGAATGATTTGCTAACAGAGCTTGCACGGCACATTCCTC AAAGTGCCTTGGATTCAATTTTAGTGTCTTTGAGTGCTCAACAACGGGATTTATTATTGCCTTTGCTGTTACCTTAGTGT TTTCTTTTTTTAGTTTTTAAAAAAGAAATTTGTATAATATATTATTTTATACTAATAATCCTTCCATATCAATTTCACTC ACACCCCAAAAAAATAGGAACAAAAGTAAGAGAAATTAGAAGCGATGTTATAAAAAAGAGAGTGAAAACGGGTGAAAATG AAATGGAAGAGAAAGTATGATGTAAATATTTCAAAACCCTTGTTTTGTAAAATAAATATGTATCAATCTCCATTTTTTAT TATCC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTCATCAGATTCAGATCATCAATTCCCACCGGAATTGCAATCCGAAGCGTATGAGGTTCTGAGTGCAAACGACAA CACCGCCGTGGAAACCCTCTTCACCCAACTCCACTCCCCTGAACACCGATCACGCGCCGTCACATTCCTCCAATGCTGTA AACACCGCCACCCCGATCTCCTCTTCATCAAGCTCTTCTACATCCTAACCGCAAGCCCTGACCCCACCACACGCGCCCAC GCCGCACGCACGCTCCAATTCCTCGACCCCACATATCTCTGGCCCAAACTCCGCCCTCTGGCCCAACAAAATCTCAGGGC CCATTTCCTCCAATTCATGGCCCAAGAACCCTCCCTCCTTGTCCTCCGCCCCGCCTCCCTCCTCCTCGCCGAAACCGTAA CCGTTTTTCACAACCCCCACCGCCAATGGCCGGAGATTCTCGATTTCCTCCTCTCCTCACTCTCCCTCCCCGACGATCGC CGCCGCGAGGTCGCGCTGTCCGTCCTCGCCGCGCTCAAAAACGACTGCCGCTCCGTCATCTCCGACTCCCTCCGTAACCG CCACAACGCGATCCACGGCCTCTACAAGTCGATTACAGATTGCTTGGAATCGGCGAGCAACGACATCAAGGTGTTGTCGT TTCGCGCGGTGGTGAATTTCGTTGAATTGTTCTCGGAGCCGGAGCTGTTTCACGCGCTCCTCCGAGCGTTGATGCTCGCC GTGTTCGCGCTTCTCCGGGGAGGATTTGAGGGGAGCTATTTCAGAAGCGCGTTTGCGGAACTTGCGAGCATGGTGTCGCG TGAGCCGATTCTGCTGAGGCCGTACATGTGCGACATGGTGCTCGACGCGCTTCAGATCGCGGAGAGCGGCGTCGCTAGGG GGACGCGGCGGTTGGTGATCGGGATGGTGGTTTCGATGGCGGAGGTGAGAGAGTGCGAGATGGTGCTGCCGAGTCTCCTG GATCAGACGGTGGTGAGATTGTTCGTCGTTTTGATGAGGATGGTGGTGCGCGTTGAGGAGGACGGTGGTGAATTGGGAGT GGAAGGTGTGAATGTTGGTGGTGGCGTGGCGGAATTCGGGATCAAGGGTTTGGAGAAGGTTTGCGCCGCCGTGGGAGGGA TCAGAACCGTCGCTGTTGTTCGTGAATTGCTGCCGCCTTATTTGGATGCGGCGGAGTGGAAGGAGCGCCATGCAGGGATT GAGATCCTCGGTGTGATAGCGAAACTGTTCTCTGATGAAATGGTAATGATGGAAAATTTTCTAGAGGAAGTGGTCAATAG AGTTTTGAAGGTATTGCAAGACCCCCAAGTGCAAGTTCGGTTGGCAGCTTTTAATTTGATGCAGATGCCCACAAATTTTG CGCAAGCTTTGCAAATCCTTTATGCTCAAAGGTTTGGGCATGCTTTTTCCATAGCACTTGTCCATGAAGAGGAAAGTAAT GTGAAGGAAGAAGCTGCAATAGCAATGCTATTCTTTCTGAAGAACACACTTCCAGAAAGCTTAACATTGTTTAAGAGTGC AGATACTGCAATGGCCAATTTATTGTCATTGATTAAGGGTTCAGAAAATTATAAGCTAAGAAGCATTGCTTTGTCAACTT TTAACACAATTGCACTGCAGTCTCGTGAAGCACCTCAGAATTACTTTGGAGATTACCTTAAAATCTTAGTGGATGCATGC ACTGACAAAAATGCTGAAATCAAAGAGGAGGGAGCAAGGGGAATTAGAATTTATGCTGAGCTTGGAACACCGAAATTGAA GCCTTACATCCATAGGTTAATATCAGAACTCATCATGCTAATAAAAGATCCAAATCGACCAGTTTCAGAGAATTCGAAAG CGCAAGATATTGCAGTTTCAGCTATTGGAAGAATTTGTGAATTCCATCGAGAATGCATTGATGGATCCCAGCTTGTTCCT GCTTGGCTAAGTTTCTTGCCTCTTAAAAATGATTTGATTGAAGCCAAATTGATGCATGAACAGCTCAGTTTGATGGTTTC AAGATTTGATAAGGATCTTTTCGGACCTGCTAACCAGAACCTCGAAAAGATTATTACGGTATTTATTCAGGTCATTGAGG AGGGTGGCAACTTAGCTACACCTAAAACAATCAACCAGATGAATGATTTGCTAACAGAGCTTGCACGGCACATTCCTCAA AGTGCCTTGGATTCAATTTTAGTGTCTTTGAGTGCTCAACAACGGGATTTATTATTGCCTTTGCTGTTACCTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESSDSDHQFPPELQSEAYEVLSANDNTAVETLFTQLHSPEHRSRAVTFLQCCKHRHPDLLFIKLFYILTASPDPTTRAH AARTLQFLDPTYLWPKLRPLAQQNLRAHFLQFMAQEPSLLVLRPASLLLAETVTVFHNPHRQWPEILDFLLSSLSLPDDR RREVALSVLAALKNDCRSVISDSLRNRHNAIHGLYKSITDCLESASNDIKVLSFRAVVNFVELFSEPELFHALLRALMLA VFALLRGGFEGSYFRSAFAELASMVSREPILLRPYMCDMVLDALQIAESGVARGTRRLVIGMVVSMAEVRECEMVLPSLL DQTVVRLFVVLMRMVVRVEEDGGELGVEGVNVGGGVAEFGIKGLEKVCAAVGGIRTVAVVRELLPPYLDAAEWKERHAGI EILGVIAKLFSDEMVMMENFLEEVVNRVLKVLQDPQVQVRLAAFNLMQMPTNFAQALQILYAQRFGHAFSIALVHEEESN VKEEAAIAMLFFLKNTLPESLTLFKSADTAMANLLSLIKGSENYKLRSIALSTFNTIALQSREAPQNYFGDYLKILVDAC TDKNAEIKEEGARGIRIYAELGTPKLKPYIHRLISELIMLIKDPNRPVSENSKAQDIAVSAIGRICEFHRECIDGSQLVP AWLSFLPLKNDLIEAKLMHEQLSLMVSRFDKDLFGPANQNLEKIITVFIQVIEEGGNLATPKTINQMNDLLTELARHIPQ SALDSILVSLSAQQRDLLLPLLLP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10527:SF51
20 741 722 5.5E-269 –
PANTHER
PTHR10527
20 741 722 5.5E-269
IPR040122
Gene3D
G3DSA:1.25.10.10
25 543 519 1.9E-37
IPR011989
SUPERFAMILY
SSF48371
32 725 694 1.81E-58
IPR016024
Gene3D
G3DSA:1.25.10.10
544 741 198 1.3E-33
IPR011989

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006606
Biological process Protein import into nucleus The directed movement of a protein from the cytoplasm to the nucleus.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0053800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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