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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0054100 |
| Transcript ID | LotjaGi6g1v0054100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT5G37490.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21; TrEMBL-Plants: tr|A0A151U9L9|A0A151U9L9_CAJCA U-box domain-containing protein 21; Found in the gene: LotjaGi6g1v0054100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9731185..9733073) extracted from Lotus japonicus Gifu genome v1.2.
TAGCTAAGCTTTGACCCGCGTACCAGTTTACCACACCCACTCTCATCTATGACCAAATCCTCATATATAAACCAACAACC CAACCTCCATTTCTTCACATCATTCAACTTCTCATCCTTCAACCCAAACCAAAACACAGAACAAACAACACAACACAACA AATCAAACTTAGTATAATCCTATTTTTCCCATAAAAATGGTTCTATCTTGGACAAGAAGAAACGTTCTCCGCCGTGTCCG CAAGGGGAAACAAAACCAAGTTCCCGATTTGCCGGTGGAGGAGATCGTGATCCCCAACCATTTCCGGTGTCCGGTGAGCC TCGACCTGATGAAGGACCCTGTAACCTTACCAACCGGCATCACCTACGACAGAACCAGCATCGAGAAATGGATCGAAGCA GGGAACAAGAAATGCCCTGTCACAAACCAGATTCTAACAACCTTCGACTTGATCCCAAACCATTCCTTAAGGAGAATGAT TCAGGATTGGTGCGTGAAGAACAGCTCGTACGGAATCGAAAGAATCCCCACTCCTCGTGCCCCGTTGAATCCCTTCGAGG TTTCCGAGGTTTGTTCGAGGTTGCTGTCGGCTTCTCAGCGCGGAGATGGGATCAGGTGTGTGGAGTTCGTGGGGAAGATC AAGGGTTGGGGGAGAGAGGGTGAGAGGAACAGGAAGTGCGTGATTGAGAATGGGGCTGGTGTTGTTCTTGCAACCGTGTT TGATTCTTTTGCTAGAGTTTCGGTTCAGAATCATGTGGGTGTTTTGGAGGAGATTTTGGAGGTTTTGACATGGATGATTC CGTTTGGGGAAGAGGGGAGATTGAAATTGAGTTCAGAAGCTTCTGTGAATTGCATGGTTTGGTTTCTGGGTGGTCAAGAT TTGGGGGCAAGAAAAAATGCTGCCAGGTTACTGAAGGAAGTCCCAGCTGAGATTTTGGTGGAAACTGAAGGAATTGCTGA CGGTTTGATTGAGATTATTAAGGATTCTATTGGGTCTAATTCTACCAAGGCATGTTTGGCTACAATTTTCAACTTGGTTT CTCATAAAGAGGGAATTGCAGTTGCTGAGAGATTTGTGGAACTGGGTTTGGTTTCATTGCTGCTAGAAATCATTGTGGAT TGTGCTGACAAAGGGACATGTGAGAAGGCACTGGGGGTGTTGGATTGTATTTGTGACTGTAAAGAAGGGAAGGATATTGC TAAAAGGAATGCTTTGACTTTGCCTCTTGTGATTAAGGTGTTGAGAGTGTCACATTTAGCTTCCAGTTTTGCTGTTTCTG TTCTTAGGAAGATTTGTGACAAGAGAGAGGAGGCGATTTTGATTGAGGCGCTTCAAGTTGGGGCTTTTCAGAAGCTCTTG GTCATGTTGCAAGTTGGTTGTGATGAGACCACAAAGGAGAATGCTACTGAATTGTTGAAGCTGTTGAATGGTTACAAAGG CAGAGCTGAGTGCATTGACTCTTCATTGGAGTTGAAGTATCTTAACAAACACTGATTCATTAGAATGATACTTTGTTTTT CTCTTTTCAATTCTTTGAATAGGTCATATTTTAGAAACAGAATTCATTGTTGTACAAAGATATACACATAAATATTGGAT GCTCAAACAATTTAATTGATTCTTTGAAATTCTTTCTATGCAAAATTGATTTATATTGTGAGGGCCACACCACTGAAACA TGATCTGGGTTATCTCCTTTTCCCTGATCATCTGTTTCTTCACCTGCTCCTTGGCCTTTTGGATTTTCAGTGCTAATAAA CATTAGAACAGGCTTGCAATAAAATTCTAAATTGAGGGATTGAGGGCAACAAGTAAACATTATGTGGAAGCATGCAATCA TGGTCATGACTGTGTTTGCAAAATCATTCTAAGTTGATTTACAGTGTAA
CDS sequence (LotjaGi6g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTATCTTGGACAAGAAGAAACGTTCTCCGCCGTGTCCGCAAGGGGAAACAAAACCAAGTTCCCGATTTGCCGGT GGAGGAGATCGTGATCCCCAACCATTTCCGGTGTCCGGTGAGCCTCGACCTGATGAAGGACCCTGTAACCTTACCAACCG GCATCACCTACGACAGAACCAGCATCGAGAAATGGATCGAAGCAGGGAACAAGAAATGCCCTGTCACAAACCAGATTCTA ACAACCTTCGACTTGATCCCAAACCATTCCTTAAGGAGAATGATTCAGGATTGGTGCGTGAAGAACAGCTCGTACGGAAT CGAAAGAATCCCCACTCCTCGTGCCCCGTTGAATCCCTTCGAGGTTTCCGAGGTTTGTTCGAGGTTGCTGTCGGCTTCTC AGCGCGGAGATGGGATCAGGTGTGTGGAGTTCGTGGGGAAGATCAAGGGTTGGGGGAGAGAGGGTGAGAGGAACAGGAAG TGCGTGATTGAGAATGGGGCTGGTGTTGTTCTTGCAACCGTGTTTGATTCTTTTGCTAGAGTTTCGGTTCAGAATCATGT GGGTGTTTTGGAGGAGATTTTGGAGGTTTTGACATGGATGATTCCGTTTGGGGAAGAGGGGAGATTGAAATTGAGTTCAG AAGCTTCTGTGAATTGCATGGTTTGGTTTCTGGGTGGTCAAGATTTGGGGGCAAGAAAAAATGCTGCCAGGTTACTGAAG GAAGTCCCAGCTGAGATTTTGGTGGAAACTGAAGGAATTGCTGACGGTTTGATTGAGATTATTAAGGATTCTATTGGGTC TAATTCTACCAAGGCATGTTTGGCTACAATTTTCAACTTGGTTTCTCATAAAGAGGGAATTGCAGTTGCTGAGAGATTTG TGGAACTGGGTTTGGTTTCATTGCTGCTAGAAATCATTGTGGATTGTGCTGACAAAGGGACATGTGAGAAGGCACTGGGG GTGTTGGATTGTATTTGTGACTGTAAAGAAGGGAAGGATATTGCTAAAAGGAATGCTTTGACTTTGCCTCTTGTGATTAA GGTGTTGAGAGTGTCACATTTAGCTTCCAGTTTTGCTGTTTCTGTTCTTAGGAAGATTTGTGACAAGAGAGAGGAGGCGA TTTTGATTGAGGCGCTTCAAGTTGGGGCTTTTCAGAAGCTCTTGGTCATGTTGCAAGTTGGTTGTGATGAGACCACAAAG GAGAATGCTACTGAATTGTTGAAGCTGTTGAATGGTTACAAAGGCAGAGCTGAGTGCATTGACTCTTCATTGGAGTTGAA GTATCTTAACAAACACTGA
Protein sequence (LotjaGi6g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSWTRRNVLRRVRKGKQNQVPDLPVEEIVIPNHFRCPVSLDLMKDPVTLPTGITYDRTSIEKWIEAGNKKCPVTNQIL TTFDLIPNHSLRRMIQDWCVKNSSYGIERIPTPRAPLNPFEVSEVCSRLLSASQRGDGIRCVEFVGKIKGWGREGERNRK CVIENGAGVVLATVFDSFARVSVQNHVGVLEEILEVLTWMIPFGEEGRLKLSSEASVNCMVWFLGGQDLGARKNAARLLK EVPAEILVETEGIADGLIEIIKDSIGSNSTKACLATIFNLVSHKEGIAVAERFVELGLVSLLLEIIVDCADKGTCEKALG VLDCICDCKEGKDIAKRNALTLPLVIKVLRVSHLASSFAVSVLRKICDKREEAILIEALQVGAFQKLLVMLQVGCDETTK ENATELLKLLNGYKGRAECIDSSLELKYLNKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 431 | 412 | 1.7E-201 | – | |
| PANTHER | 20 | 431 | 412 | 1.7E-201 | – | |
| SUPERFAMILY | 23 | 108 | 86 | 4.32E-31 | – | |
| ProSiteProfiles | 31 | 105 | 75 | 43.868 | ||
| Gene3D | 32 | 105 | 74 | 1.4E-29 | ||
| Pfam | 32 | 103 | 72 | 3.9E-22 | ||
| SMART | 35 | 98 | 64 | 1.2E-31 | ||
| CDD | 36 | 78 | 43 | 2.36649E-24 | – | |
| Gene3D | 130 | 350 | 221 | 2.8E-8 | ||
| SUPERFAMILY | 145 | 408 | 264 | 1.27E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0054100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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