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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0055900 |
| Transcript ID | LotjaGi6g1v0055900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich repeat secretory protein; TAIR: AT5G37660.1 plasmodesmata-located protein 7; Swiss-Prot: sp|Q0WPN8|CRR60_ARATH Cysteine-rich repeat secretory protein 60; TrEMBL-Plants: tr|K7MPT0|K7MPT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0055900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10122205..10124720) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATGACACATCAAAATTTTTGCCGTAGATGAGCCAATAGGGGATCTACGAGTCTTCTCTTCTCCATTTACCAAACA CTAGCTAATATACTATCAATTATCAAATCAAACCCACCATGATTATCATTGTCCATTAGCTAGAAACACAACATGCATAT ATTTCTGTACTCATGCCATGCGAGGTTCAACTTCTAACTCTTATTATATAAGAATATATATCAACCTCTCTCTTACTACG TACGTCAACACATATTCAACTTCTGGCTAGCTCGTTCCTTCTCTCATCACACTCACACTCACACATGGCCAAAACCAAAA CGAGCCTCTCTCTCTTAATCTTCGCCAATCTCATTGTTCTTTCACTCTCGTCTTCCCAGCTAGACTTGTTCCTCTACGGC GGGTGCACACAGCAAAGGTACACCCCAAACTCCCCATACGAGCTCAACCTCAACTCGCTCCTCACCTCCCTCGTCAACTC AGCCACCTACTCCTCCTACAACAACTACACCGTTGTAGGTGCTGACGATGTCGCCTACGGCCTCTACCAGTGCCGCGGTG ACATCTCCATGCCGGACTGCGCCACCTGCATCTCCCGCGCGGTCTCTCGTGCTGGAGTCTTGTGTCAGGAGGCGCGCGGT GGCGCAGTCCAGCTCGAGGGATGCTACGTGAAGTACGACAATGCCAAGTTCTTGGGGGCCGAAGACAAGACAGTGGTGCT GAGGAAGTGCGGGCCCTCCGCCGGGTACAGCCTCGGCGAGAGGGATGCGGTTCTGTCCGGGCTCGCGGGCTCGGGCGGGT ACTTTCGGGTTGGTGGGGCAGGCGGGTTGACGGGCGTGGCGCAGTGCACCGGGGATTTGAGCTATGCGGAGTGCCAGGAT TGCGTTTCGGAGGCTATCCGCCGGCTGAGGAGCGAGTGCGCTGCTGCGGATTACGGAGATATGTTCTTGGTCAAGTGTTA CGCCAGGTACTCCAATGCTGGGGCCCATGCTTACACCAAGGCCCATGGTAAGACCCTAAAACTTATGAACAAAAAATAAA AAAGAAACTTTTTTTTTTGGGTGTCATTCTCACATATGATTTGAATTTCTGAAGTGCAAAAACTGTCAAGATGAAAAAAA TGTTAAAAGAAAAATGCTACCAACACGGCGACACTTTTAACATTTCCTTTTTAACATCCACTTGTTGATTGGTTGATATT TTGTGCGGATTTCACTAGATATGTGAACTTTCTCTTTCAATTCGGTAAGCATAAATCACAACGAATCAATGAAAAAAATG TTAAAAATAGAGTGTTGAGTTGCTACTTCTTCTCATAATGCTAATTTTTGAAACTTAGGTTATTTAATTGCCCTTTTATG CGTTGTCTTTTTATTCTCTATGTTTGGGGAAAATTTTGTTGAATTTTTTTATCCAATTATCTGGATATTCTATGAAGTAT GAATCATTTAAAAAAATGTAAACATAATAAATCAGGTTTACTTTGCTTATAAAAAAAATCAGGTTTACTTTGGTTACTTT CTTTTATTTAAATAGCGAGATTCGTGTATGACCTATGAACATCATGTGAACATTCTTTTTAATGTCTCTTTTGCTTTTTG GGTCACTTTAACAAGATAATTAGTGGGTGTCAGGTCCTAAATTTCATAGTATATCAGATTGTATCTTAAAAGACAAGAAA AGGAAACAATTACTTTTTCCTGAAAATTGATTTACCTAACTTATTTTAGCAGGTAAATCGAACAACAGCGATGGTGAGAA GACATTTGCCATAATTATTGGATTACTAGCAGGTGTAGCTATACTTGTTATTTTCCTTGCTTTCGTGAGGAGGATTTGTG GGGGACAAGGTAAATTAATACCATGTATTTATTTTCTCTTATCCTTTTACTTTTATTTTTATATAATTGATTATTAATTA CTTGCATACATTAGAAAATACCACGCAGGAATGGCTTGGCATTAACATGGTTCCTTTTTTTGATTTTTTTTTCTCACGCA GGTAAATAAATAAATTAAAAGTTTGTCAACCTCAGTAGCATCGCATTGGTCATGAGCCACTGAACAACTCTCAGCCTTCT CCATTAATTGCTTTGCTTTTGGAACCTCTTTTGCTTTCTGTATCTTGACAACGGCTTATCTTTTTCCCCTCAATCTCTTT AATTATCTTCATCTTTATATTATAAAATTACATTCAAATTAAAGAGGAGTTTGATGAGGATATCATGTTAGAAAAGAATG CAGGATGGGGACACTGGTTTAAATACAAAAGGCAAAAGGAACGAGGAACAAAAGAGAACTAAAAAAGATTCTGTGTGTGA TGTCTCATCATCCTTTCTTGCCAAGAATTAATTGTATCATTCTTTTGTTTTTTAAAGTAGTAAAAGATTCCATCTCCCTT TTTGTGTATCCTCGATCGGTATATGCTACCATGAATTTTTAGGTATATCTGATATATAAGAGAATTTTCGTGTTTTTCTT CTTTCGGTTGCATGCAAATGAGATTGGTTATTTCCC
CDS sequence (LotjaGi6g1v0055900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAACCAAAACGAGCCTCTCTCTCTTAATCTTCGCCAATCTCATTGTTCTTTCACTCTCGTCTTCCCAGCTAGA CTTGTTCCTCTACGGCGGGTGCACACAGCAAAGGTACACCCCAAACTCCCCATACGAGCTCAACCTCAACTCGCTCCTCA CCTCCCTCGTCAACTCAGCCACCTACTCCTCCTACAACAACTACACCGTTGTAGGTGCTGACGATGTCGCCTACGGCCTC TACCAGTGCCGCGGTGACATCTCCATGCCGGACTGCGCCACCTGCATCTCCCGCGCGGTCTCTCGTGCTGGAGTCTTGTG TCAGGAGGCGCGCGGTGGCGCAGTCCAGCTCGAGGGATGCTACGTGAAGTACGACAATGCCAAGTTCTTGGGGGCCGAAG ACAAGACAGTGGTGCTGAGGAAGTGCGGGCCCTCCGCCGGGTACAGCCTCGGCGAGAGGGATGCGGTTCTGTCCGGGCTC GCGGGCTCGGGCGGGTACTTTCGGGTTGGTGGGGCAGGCGGGTTGACGGGCGTGGCGCAGTGCACCGGGGATTTGAGCTA TGCGGAGTGCCAGGATTGCGTTTCGGAGGCTATCCGCCGGCTGAGGAGCGAGTGCGCTGCTGCGGATTACGGAGATATGT TCTTGGTCAAGTGTTACGCCAGGTACTCCAATGCTGGGGCCCATGCTTACACCAAGGCCCATGGTAAATCGAACAACAGC GATGGTGAGAAGACATTTGCCATAATTATTGGATTACTAGCAGGTGTAGCTATACTTGTTATTTTCCTTGCTTTCGTGAG GAGGATTTGTGGGGGACAAGGTAAATTAATACCATGTATTTATTTTCTCTTATCCTTTTACTTTTATTTTTATATAATTG ATTATTAA
Protein sequence (LotjaGi6g1v0055900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTKTSLSLLIFANLIVLSLSSSQLDLFLYGGCTQQRYTPNSPYELNLNSLLTSLVNSATYSSYNNYTVVGADDVAYGL YQCRGDISMPDCATCISRAVSRAGVLCQEARGGAVQLEGCYVKYDNAKFLGAEDKTVVLRKCGPSAGYSLGERDAVLSGL AGSGGYFRVGGAGGLTGVAQCTGDLSYAECQDCVSEAIRRLRSECAAADYGDMFLVKCYARYSNAGAHAYTKAHGKSNNS DGEKTFAIIIGLLAGVAILVIFLAFVRRICGGQGKLIPCIYFLLSFYFYFYIIDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 8 | 271 | 264 | 1.2E-110 | – | |
| PANTHER | 8 | 271 | 264 | 1.2E-110 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 245 | 221 | - | – | |
| ProSiteProfiles | 27 | 129 | 103 | 18.96 | ||
| Gene3D | 27 | 129 | 103 | 1.5E-26 | ||
| Pfam | 34 | 126 | 93 | 4.5E-20 | ||
| ProSiteProfiles | 130 | 227 | 98 | 11.012 | ||
| Gene3D | 154 | 226 | 73 | 5.8E-14 | ||
| Pfam | 169 | 224 | 56 | 6.9E-10 | ||
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 246 | 264 | 19 | - | – | |
| Phobius | 265 | 275 | 11 | - | – | |
| TMHMM | 274 | 293 | 20 | - | – | |
| Phobius | 276 | 293 | 18 | - | – | |
| Phobius | 294 | 295 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0055900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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