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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0056100 |
| Transcript ID | LotjaGi6g1v0056100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT1G66230.1 myb domain protein 20; Swiss-Prot: sp|Q50EX6|ODO1_PETHY Protein ODORANT1; TrEMBL-Plants: tr|A0A151U9R3|A0A151U9R3_CAJCA Protein ODORANT1; Found in the gene: LotjaGi6g1v0056100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10184330..10187139) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAGTAAAGTAGATAACAAAAGACCAATTGCGTTAGTGGGGTTCAAAGACTTAGGAGAGAGCATAGAGAGCTAAATT CTATATATAAATAAGTAGGTGGTGAAGCTCTATCCTATCTTGTATATTCTTAGGAACTCTTTCTCAACTCTCTTTCTCTC TTTCTTTATTATTCTCTCTCTTTATCTCTCAATATCAGTTTTGGAGGATCATCTTAGACTTTGTTTGTTGTTTGGCATTT CCCATTTTGTTAGAGAGGAAAAAAAAATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACT GCAGAGGAGGATAGGAAGCTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGTTGGCAGG TCTTGCTCCTTTTCTTCTTGCATGTCTCTTTTTTATTCTGTTCGAGTCAAGTATGATCACTGTGGGCAGGAAAACACTAT AATGGTCATGCTTCTATGGGAATGAAAACATTGATGTGTTTCATAAATTTGCGTTTAGGGGAAATGGACTTTGGTCTTTG TCCCTGCTGTGCTCATTTTCTTTCCATTCTCAAGGATAGAAAGCAATCAAAATTCACATAATACATGTTTGGATACACAG TAAAAAATGACATTAAAGCCAAAATTCATGTCGATAGAAAAAAAAATTCTTAGTTTTTGCAACTTTCAACTATCATTTTT GCCTATTCTGTAATTTTTCACTGTGTATCTAAACATTAAAACATGCATGTTCATTTTTCCTTGTAAACATTATTTTTATC AAGTTTCTGCATTTGAATTACAAGGAAGCAATAATAAATACTAGAGATTGAAATGGTTATTACCTTAATCTCGTTTTTTG AGGACTTGATTAACTGGAATAAAGTTTCAACTAGTTCAATTGGATTTTTCATTTAAGTGATTAACTGAAACTAGAAAGTA ATCATTGAAGTTTTTCATGTAGGATTGTTAAGGTGTGGGAAAAGTTGCAGGCTCAGATGGACTAACTACCTGAGGCCTGA CCTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGAAACAGGTTCATTC CCCTGTTTCTCTCTGTTTCCTCTGTTCTGCATGTTTTGCTATTCTTTATGGAATAATATTTCACTGTTTCACAAACTTGA CAGTGCCTTTATTTTTCTATCTCAGACAATGATTTAAATTGACACCTCTTAAATCATACCAGAAAGAATAACTTATTGAA GTCATCATTTCAATACTACACGCTCTTCAAGTGGTCCTTTATTTTATTGATCACATAAAGAGAACATGGTCCCAAAAAAT ATTTACATGAAATGAAATAGACGTGTAAAAATTGTAGACCAAGTCTTCTCTTTCTCTTTTATACTTTCTTTCTGAGTTTT ATTAAGGAAATATAAAAAGTACTATGCATGATTGCTCTTCTTTAAAGTTGGCTGCAAAGGGAAAATTCTTAATATAATAT AGAAATAGTAAACGATGACCAAGTTTGTCTTTTTGCCAAATATTTTTCTTATTCCCTAGCTAGCTCCCTTGACATTGATA AAGTCGTAATTCTTTTTCAAATGTTCCCATTACTCACATAAACCTCATCATGGAATCTTTCATTTGTTAAAAAAAATGAT TAGGATTACTCCAATGATTACTGATGTTCTTGTTTTCTTTTTTTTAACTTTTTTTCTTCTTTCTATATTTTCTTCTGATG CAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGA AAAAGCTCAAAAAATTGGGAATTGATCCTGTTACCCATAAGTCACTCTCTGAGGTTAAAGCACACACACAACAAGAGCAA CCATTGCAAGAACAACAAAAACAACCTTCTTCCCCAGATGAATTGGACCCCAAATTTGAACATGAAAATCACCAAAATAA GGACTTAGAGAAACCAGAGAATTCAATTGAGTCATCAACCATCACTGAATCCAAAGAGGAAGACCAAATGATCATGACAC CTCTATTTGATTCAATGGAAATAATGAATGGATTCTGCACAGATGAAGTTCCAATTATAAAACCTGATGAGATTCTAGTT CCTTGTGCTCCTTCTTCTTCACAAACCAGCACTTCATCATCTTCTTCTGCTTCAAATTCATCCAATAACTTCCTTGAAGA CCTTGTTCTCCCAGAATTTGAGTGGTCTAATATTGAAAATTGCAATGACATCAACAGCATTAACACCAGCATGGCCTTGT GGGATGATGACTTTATTAGAAGTTTGGAGTTTCTTATTAATGAAGATGATGATGGTAACAAGAAACAAGTGTTTGATGCT CCTCTCAATCAGTATCCAAGAATGGTCATGGATTCAGAATCTTGGGCGAATGGATTGTTTTGACTTGAAAATATTACTTG TAATTTGGTTGTAGTTGTTGCAAAGAATAAACAGTAGATGAATCATGATTTGAAAAGAACCCAAACTCTTGTCTAGTAAT TAGTTTTTATTTTATCCACTTTTCACCTTATAATAAAGGGAAAAGAAATATGTATATGGTAGTGCAGGCGTGTCCATTTG TTGCTTCTGCTGGTGAAGGCATACTTGGTTATACTGGAAATTTTATGTTCTTTTTGTCAAGTGAATGAAGTTTTATATTT TCCTACATTGTAGATTAGAAATAAAATGTATCGAAATGAGGGGTGTTTTAACTCTTCTGTTAAATTTTGAGTAATCCTTG AAAATCTTTC
CDS sequence (LotjaGi6g1v0056100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAGGAGGATAGGAAGCTCATCAA CTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGTTGGCAGGATTGTTAAGGTGTGGGAAAAGTTGCA GGCTCAGATGGACTAACTACCTGAGGCCTGACCTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGAT CTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCA CTGGAATACCCACATAAAGAAAAAGCTCAAAAAATTGGGAATTGATCCTGTTACCCATAAGTCACTCTCTGAGGTTAAAG CACACACACAACAAGAGCAACCATTGCAAGAACAACAAAAACAACCTTCTTCCCCAGATGAATTGGACCCCAAATTTGAA CATGAAAATCACCAAAATAAGGACTTAGAGAAACCAGAGAATTCAATTGAGTCATCAACCATCACTGAATCCAAAGAGGA AGACCAAATGATCATGACACCTCTATTTGATTCAATGGAAATAATGAATGGATTCTGCACAGATGAAGTTCCAATTATAA AACCTGATGAGATTCTAGTTCCTTGTGCTCCTTCTTCTTCACAAACCAGCACTTCATCATCTTCTTCTGCTTCAAATTCA TCCAATAACTTCCTTGAAGACCTTGTTCTCCCAGAATTTGAGTGGTCTAATATTGAAAATTGCAATGACATCAACAGCAT TAACACCAGCATGGCCTTGTGGGATGATGACTTTATTAGAAGTTTGGAGTTTCTTATTAATGAAGATGATGATGGTAACA AGAAACAAGTGTTTGATGCTCCTCTCAATCAGTATCCAAGAATGGTCATGGATTCAGAATCTTGGGCGAATGGATTGTTT TGA
Protein sequence (LotjaGi6g1v0056100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVID LHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKLGIDPVTHKSLSEVKAHTQQEQPLQEQQKQPSSPDELDPKFE HENHQNKDLEKPENSIESSTITESKEEDQMIMTPLFDSMEIMNGFCTDEVPIIKPDEILVPCAPSSSQTSTSSSSSASNS SNNFLEDLVLPEFEWSNIENCNDINSINTSMALWDDDFIRSLEFLINEDDDGNKKQVFDAPLNQYPRMVMDSESWANGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 263 | 261 | 8.8E-108 | ||
| PANTHER | 3 | 263 | 261 | 8.8E-108 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 14.177 | ||
| Gene3D | 11 | 67 | 57 | 3.3E-17 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 8.24E-27 | ||
| SMART | 13 | 63 | 51 | 1.7E-12 | ||
| Pfam | 14 | 61 | 48 | 2.7E-12 | ||
| CDD | 16 | 61 | 46 | 4.29562E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.609 | ||
| SMART | 66 | 114 | 49 | 3.8E-14 | ||
| Pfam | 71 | 111 | 41 | 3.3E-13 | ||
| Gene3D | 71 | 150 | 80 | 3.9E-20 | – | |
| CDD | 74 | 112 | 39 | 5.42491E-11 | ||
| MobiDBLite | 132 | 189 | 58 | - | – | |
| MobiDBLite | 134 | 150 | 17 | - | – | |
| MobiDBLite | 151 | 184 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0056100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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