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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0057900 |
| Transcript ID | LotjaGi6g1v0057900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0057900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10581985..10585559) extracted from Lotus japonicus Gifu genome v1.2.
CCCCGCCTCCCATTTTTAATTATTATAAATACAGCCGAAAGGGGTTTTCCCTGATTCTGCACATTTACATGTAACAATTT TCCCTCTTCTCTTCTTAACCTTGACAGCACTTAATAATCGGTAAGTTTTCTTCCATTCTTTTGTTGGAGGGTTTGTGTGC TTCTAAATTACTGTATCTGATCATGCTTTTTCGTTCATGTTCCAGGGTATTTGGTTATTTTCATTTGAATTCAATTTTGT TTTTGTATGGTCTTTACCTGCTTGATTAAATGACTATTTCCTTATATTGGATTAAACCTAAATTGGAATGGATTTTCGCC TCAAACTTGTACTGTTAGAAATTAGAATATTTGTTTGTGTAGTGGGGTTCTGCAGTTGATGTTTCTTTTAGTCCTTTCAT CACAATCTAGTGATCAATGAAATTTGAATCAAGTGTTGTGGACATGTATGTAGAACACTAGAACCTTTCTTCTGCTTGAC AGATGCTGGGTCCATTGTTGGTTCTTTTTCTAATTTTTAGTCTAGCTGTGGTTTATTGGCCAGGATGTTTATGCCTAAAA CTGGTTCATGATTTAGATTTGTGTAGGTTTGTTTCCTATTTCATGGCTAAGAATATTATGATCTTCACTGTGTTGCCTTG ATTATATTAATCAATCTCTGTAATTTTGTCCTAGTATTAAAAGCTTAGATCTCCCTCCTTGACTTTCTAAGCCTTACCTT TGCATTCCTGTTGCCTTTAGTTGGAAGTTTGTGGGTGATTATGGTGGTTTTTGTTCTTGTTACGACCTAGAGATTCTAGA TCTAGGGTTTCGCACAGCTGTTTATGAATAAAAGAAAGAACTTGTCTTATTGAATGAGGTGTCTAGCCTTTTATAGTGGG GCTAAACCCCAATCCTAAGCTATTACATCATGGGCCTTACAATTACCTAAAGGGTCATGCGTCAGGTCCGACCCATACAA CAATGACTCACCCTCAATCCTTAACGCAGACTTGCCTTGTAGCCTAAAAACCCTGAAAGGGGCTAGGGCGCTAGCTTTAG GGCGTGGCACCCTAACCAGTCTACATGCCCACAATACGCTGAGTCTGAAGTATGAAGACGAAGTGCGTCTTTATTCTAGC TTACCAAGTATGCTTTCCTCTCACCCTTGTTGCAACCTTAGACCGTGAAAGGGCTTAAGCGCCAACTTTAGGGTGTGACA CCCTAGCCAGTCCAATTTTAGAAGATCTCATTTCTCTGCTTAGGAAAAGCAATAGTTTGAAGTAAGGATAATGCATATGG AGTTTGTAAAGACAAACATTCTATTCATTTTTCTTAAAATGTAAGATAAACTGAAAATATTATGAGAAAAAGGATGATGC ACCGACGATGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTTAAGGATGTGCCATGTCAATTAATGAAATTAAATAA AAAGAGAGATTTTCTCATATCCTTGAAATCTGATTGATTGACGGTGTAAAAAAACTTTACACCGTCAGTGCATAGAAATT AAACTCAAAGATTATTTATTTTTTAAGCAACACTTCTATTTAATTATTTACATAGAAATCTGGCAACATTTATGAGATTT AACTGCATTTGATTTGTAAATAAAATCAAATAGTTAAGTTATATATCCCATTAATTGAAATCAATTAACATCACATCAGC GGAATTGATTTATATATGAAACATTAGAGCATTCATTACCTCTTGTATTTTCTGACAAGCTATTTGAGTGGCGAAAGAAT TTTGAACAATTAGTAAGTATTAAAGTTTATCACAAAACGTATGACTTTTATAAGTCACAGAGACTATTCAACTTTCAAAC GCCAAGATATCATTTTTATTGTTTATAAATCTATTGTTGAACATAGTTAACAATCAACTTCATTTGCGGGATGGCTGCAT CTTCTTCAAGGGCAGTGAAGGAAGCAAGAGGAGAGAGCATAGAGGGGCCAAACTGGCTTGAACTTCCTAGAGAAGTGACA GCAAAGATTCTGCACAAGCTTGGTCCCTTTGACATTTTCACCAATGCAAGCCGAGTGTGTCCTTTATGGTGGAAAATCTG CATGGACCCTCTCATGTGGCGCACAATTTACTTGACCAACCGCCCTCCCTATTCACACTCCAAATTGGCGATGTTTTGTC GCCATGCCATCAAACGAAGTTGTGGTCATTTGGAAGACATTAGTATTGAGGGTATTGGCACTGATGAAGTCCTCAAATAC ATTGCTGATAGGTAATCTCATCATTTTTCTCTCTGTTGGCTGCCATGTTTTATGATTATTTCTTATTCTGTTTATGTTGC ATGAACAAAACCTTTTCTATTTTATGTGTCTCCTACAGGTCTGCTATTTTCATGTTTATTTTTTATTCATTGGACATGTG CTCATTTATGTCCTATTTTTATAAATAGCATGAAACATTTGAGTGAAAACTCAACCTTTGGCAACATGTGTTTATTGAAA ACTCAACCTTTTTATCTGTTTCTTTTCAAAAATTTACAGTGGAAGTCACCTAAGACGGATTTGTCTTTTAAAATGCTGGG AAATTTCAGACAAAGGGTTGAGAGAGGTTGTGAAGAAGCTTCCACTGCTGGAAGAGTTTGAAATTTCATTCAGCTGCCTA TCTAAGGATACTTTGGAACTTATGGGAAAATGTTGCCCAAATTTGAAAGTGCTGAAATTTAACATGAAGGAATATAAAGG CTTGAAGTCTGATGCTGAGGCGTTTGCTATTGCAAAAACCATGCCTCAACTATGTCATCTCCAGCTTCTGGGAAACAGGC TCACTAATGAGGGCTTGCTTGCCATTCTTGACGGATGCCCTCATCTTGAATCTCTTGATCTGCGTGTTTGTTCCAATGTC GATTTGAGCGGAAGTTTGAGGGAAAGGTGCTGTAAGCAGATCAGAGATTTACGATTTCCAGAAGACTTGAGTGAAGTTTC CACCTATGTTGAAGATGAACAACCTGATTATGATTATTATTTTGAATGTGACTGTGGATGCGACTGTGACTGGAGCAATG AAGGGGACGATAGGGCAAATGATGAATATATCATCGCTGACTATTATGGTCTATTATGATTCATTTTGTAGCTAAGCTAT CCTGTGTTCTTTTAGGATATGTTAATCACCTGCAGGTACTGTTCTATATGGCATTTAATTTTGGTTTGAAGAGGCTCACT TGTTCTTCTAAATGCCATGGTTTTTTTTTTCTTTACTTTTGTGGTGTCCATGTATTCAGACTAGTACTTTATATACTTAT GAATGGTTTTAACATACTTTGTTAAGATGGCTCAAGTATTTTGATTTTGTTCCTAACTCTCTTTGGTTTCCTATGTTTTT TTTATTTAACGTTTGCTGGTTCCTTTTTTTCCCTTCTCAGGCCCAAGCTTGTATCAGTTATTTGTTCATTAATTAGAATT TAAAGTGATGGATTCGAAAAACAAAAGAAGGAAGGTTGTCTGTAATATCATCAATGTTGAATTCATATTGTCTTTATGTA TGTTATGCGGATGTTCTATTGTACCTAAGCTAAAGATTACTAGTTAAAATTATCA
CDS sequence (LotjaGi6g1v0057900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTTCGTTCATGTTCCAGGTTAACAATCAACTTCATTTGCGGGATGGCTGCATCTTCTTCAAGGGCAGTGAAGGA AGCAAGAGGAGAGAGCATAGAGGGGCCAAACTGGCTTGAACTTCCTAGAGAAGTGACAGCAAAGATTCTGCACAAGCTTG GTCCCTTTGACATTTTCACCAATGCAAGCCGAGTGTGTCCTTTATGGTGGAAAATCTGCATGGACCCTCTCATGTGGCGC ACAATTTACTTGACCAACCGCCCTCCCTATTCACACTCCAAATTGGCGATGTTTTGTCGCCATGCCATCAAACGAAGTTG TGGTCATTTGGAAGACATTAGTATTGAGGGTATTGGCACTGATGAAGTCCTCAAATACATTGCTGATAGGTAA
Protein sequence (LotjaGi6g1v0057900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFRSCSRLTINFICGMAASSSRAVKEARGESIEGPNWLELPREVTAKILHKLGPFDIFTNASRVCPLWWKICMDPLMWR TIYLTNRPPYSHSKLAMFCRHAIKRSCGHLEDISIEGIGTDEVLKYIADR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| PANTHER | 25 | 130 | 106 | 1.1E-36 | – | |
| PANTHER | 25 | 130 | 106 | 1.1E-36 | – | |
| Phobius | 25 | 130 | 106 | - | – | |
| SUPERFAMILY | 26 | 89 | 64 | 3.66E-13 | ||
| Gene3D | 31 | 129 | 99 | 4.5E-11 | ||
| ProSiteProfiles | 35 | 82 | 48 | 10.319 | ||
| Pfam | 38 | 84 | 47 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0057900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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