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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0064200 |
| Transcript ID | LotjaGi6g1v0064200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Guanine nucleotide exchange family protein; TAIR: AT1G13980.1 sec7 domain-containing protein; Swiss-Prot: sp|Q42510|GNOM_ARATH ARF guanine-nucleotide exchange factor GNOM; TrEMBL-Plants: tr|V7D1N8|V7D1N8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0064200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11860961..11866021) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGACGACTAAAGCTGCAAGCTGGTATCAATTCAATAGACGAGGAAGAACCTGAGGAATGTGATGCTTCCTATCCTAA TAAAACAACTTTGGCGTGCATGATCAATTCTGAAATCGGTGCTGTTTTGGCAGTCATGAGAAGAAATGTAAGATGGGGAG GTCGTTATATGTCAGGGGATGATCAGCTGGAGCACTCCCTCATTCAGTCTTTTAAGGCATTAAGGAGACAAATCTTTTCG TGGCACCACCATCAGTGGCAAGCTATCAACCCTGCCTTGTATCTGCAGCCATTTTTAGATGTGATTCGGTCTGATGAAAC CGGTGCAGCAATTACTGGTGTTGCTTTGTCGTCTGTTTACAAGATCTTAACTCTTGATGTGAGCGATCAAAATACTGCCA ATGTTGACGATGCCATGCACTTGGTGGTTGATGCTGTCACTAGCTGTAGATTTGAGGTCACGGATCCATCTTCGGAAGAA GTTGTTTTAGTGAAGATACTACAAGTTCTCCTAGCATGTATGAAAAGTAAAGCATCTGTAATGCTGAGTAACCAACATGT TTGCACCATAGTGAATACTTGTTTCCGTATAGTTCATCAAGCAGGAACCAAAGGCGAGGTTTTGCAGCAGATAGCACGGT ACACAATGCATGAACTTGTAAGGTGTATTTTTTCTCACCTTCAAGATGTTGGCAACACCGACCATGCATTGGTTAATGGA AGAGCTAATTTGAAACAGGAGGTATGAAAATGAATTTTAACTTTATTTCAATGCTACGTTTTTTCCATGATCATTCTCTT AGCTGCTAGGGAAGAAAATAAAAGTAAGGGAAATTGAGGGGAGTGGTGAGAGAGAGGAATTTTTTCTTCCTATTATGCAA GAAGCCATGCTTTCAGTTAGTTTTCTCTATTTGCAATTTGATAGACCGTCAGGGAAAAAGTTTACTTGTCTTCTGTCTCT GGATAGAATACGGCCAACTACCTATTTAAAGTAAAATTTCCATCATTTAATTATTTAATTATCTTTAACAAAATATACAC CATCCATTTTTGGGTGTCATATCATTAATAGTGCTTTACCTTCTGGCTATTACTGGAAAGTATTCTGGACATCCTAAGAT GGACCTGACAGACTTCTCTTTCCCTCTGTCTCCCAATCCTCAGCAAGAAGAAAGTATCTTTACAGTATTTGTGTGTAGTT GGTACAGAAAAAGAGCTTGTCTTTTTGGATAGTTACTGTAACTGGAATAAGTCAATTTTTTGGACATTCAAAGAGAACTG TTAGTTGTTTTGCCTAAAATTAACAGTTTTGGGTGGAAGAACTTAATATTAATGTAATTTCTATTTGAACATTCTTATTT ATTGGTTGTTCATGCAGACTGGAACTGGAGGCCTAAATAATGAGTATGCTTTTGGAAGTAGACAATTGGAGAATGGTAGC TTGAGTTCTGAATATGATAATCAGTCATTACCCACAAACCTTGCTCCCAATGCTGCAACTGGTGTGACAGCTACTGTGAT GGATGAAAACACAGCAATAGCTATTAGTGGCAAGGATGGTGTACACTTTGACATGCATCTGATGACTGAACCATATGGTG TTCCTTGCATGGTGGAAATATTCCACTTTTTGTGTTCTTTGCTGAATGTCGTTGAGCATATGGAAATGGGACCTAGATCA AACACTGTAGCATTTGATGAAGATGTACCCCTCTTTGCTTTAACTTTGATTAATTCTGCTATAGAACTTGGAGGGCCTTC TATTCGGCGTCACCCAAGGTTGCTGAGCTTAATTCAAGATGAACTGTTTCATAATCTGATGCAATTTGGTTTGTCAATGA GTCCCCTTATACTTTCAATTGTGTGTAGCATTGTTCTCAATCTTTATCACAATCTTCGTCCAGAACTCAAATTACAGATA GAAGCATTTTTTTCTTGTGTCATCTTGAGACTTGCACAAGGCAGATATGGGGCTTCTTACCAGCAGCAAGAGGTAGCCAT GGAGGCCCTCGTCGACTTCTGCAGGCAAAAAACGTTTATGGTAGATATGTATGCTAACTTTGACTGTGACATAACTTGCA GTAATGTCTTTGAAGACCTTGCTAATTTGTTGTCCAGAAGTGCATTTCCTGTGAACTGTCCATTGTCTTCCATGCATATT CTTGCTTTGGATGGTCTTATTGCTGTCATACAGGGAATGGCTGAAAGAATAGCCAATGGATCTGTAAGCTCAGAATATTC TCCAGTGAATCTTGAAGAGTATACCCCATTCTGGATGGTGAAATGTGAGAATTATAATGATCCAAATCATTGGGTTCCTT TTTCCCGCCGAAGAAAGTACATAAAGAGAAGATTAATGATTGGTGCTGACCACTTTAATCGTGATCCTAAGAAAGGTCTT GAGTTTCTCCAGGGAACACATCTTTTGCCTGACAAACTTGATCCCCAAAGTGTTGCTTGCTTTTTCAGATACACTGCTGG GTTGGATAAGAATCTTGTTGGTGATTTCCTAGGAAACCATGATGAATTCTGTGTTCAGGTTCTTCATGAATTTGCTGGAA CATTTGATTTCCAAGACATGAACTTAGATACAGCACTGCGTTTATTTTTGGAGACTTTCAGACTGCCTGGAGAATCACAA AAGATTCATAGGGTGCTTGAAGCCTTCTCTGAGAGATATTATGAACAGTCACCACATATCCTAGCTAACAAGGATGCTGC TCTTGTGTTATCTTATTCAATGATAATGCTTAATACAGATCAGCACAATGTGCAGGTTAAAAAGAAGATGACAGAAGAGG ATTTTATCCGAAATAATAGGCATATAAATGGTGGCAATGATCTTCCTCGAGATTTCCTATCAGAGATTTACCATTCAATT TGTAAGAATGAAATCCGTACAACCCCTGAACAAGGTGTTGGATTTCCCGAAATGACTCCAAGTCGATGGATCGATCTAAT GCATAAGTCAAGAAAAACTGCTCCATTTATTGTATCTGATTCCAAGGCCTACCTTGATCATGATATGTTTGCCATAATGT CAGGTCCAACTATTGCTGCCATCTCTGTGGTGTTTGATCATGCTGAACATGAAGAGGTTTGCCAAACATGTGTGGATGGA TTCCTAGCTGTTGCTAAGATTTCTGCTTGCCATCATCTTGAAGATGTTCTTGATGATCTGGTAGTGTCTCTTTGTAAGTT CACTACGCTCTTAAACCCGTCATTAGTTGAGGAACCAGTTCTTGCCTTTGGAGATGACATGAAAGCAAGAATGGCAACTG TAACTGTATTCACAATTGCAAATAGGTATGGTGATTACATACGCACAGGTTGGAGGAATATTCTTGATTGCATCTTAAGA CTGCACAAGCTTGGTCTTCTTCCTGCCCGTGTTGCCAGTGATGCAGCTGATGAGTCAGAACTTTCTGCTGAAACTGTGCA TGGAAAGCCTATTGTGAATTCCTTATCCTCTGCTCATTTGCAGTCTATTGGCACTCCTAGGAGATCTTCAGGATTGATGG GTAGGTTTAGTCAACTCTTATCTCTTGACACTGAAGAGCCAAGATCACAACCTACTGAACAACATGCTGCTCATCAGCGC ACCCTTAACACGATAGAGAAGTGTCACATTGACAGCATATTCACAGAGAGTAAATTTCTGCAAGCTGAATCTCTATTGCA GCTTGCCAGAGCGCTCATTTGGGCAGCAGGTCGACCTCAGAAAGGGAACAGCACACCTGAGGATGAAGATACAGCAGTAT TCTGCCTGGAGTTACTGATTGCGATCACTTTGAATAACAGGGATAGAATTGGCATTCTCTGGCAGGGTGTTTACGAGCAC ATATCTAATATTGTTCAGTCAACTGTAATGCCCTGTGCCTTGGTAGAGAAGGCTGTTTTTGGACTTCTGCGGATTTGTCA GCGGTTGCTCCCCTACAAGGAGAACATTGCAGATGAACTTTTGAGATCATTGCAACTTGTCTTGAAGCTTGATGCCCGAG TTGCTGATGCATACTGTGAGCAGATTACTCAGGAAGTCAGTCGCCTTGTGAAGGAAAATGCTTCTCATATAAGATCTCAG TTAGGATGGCGCACAATCACCTCCCTACTTTCAAACATAGCTAGGCACATAGAAGCATCTGAGGCAGGGTTTGATGCACT GTTGTTCATAATGTCCGATGGTGCCAACTTAGTTCCAGCTAATTATGTTCTCTGTATAGATACTGCGAGGCAGTTTGCTG AGTCTCGTGTTGGGCAAGCTGAGCGATCTGTACGAGCACTGGATCTCATGGCAGGATCTGTCAGTTGCTTGGCCCGGTGG ACTACCGAGGCTAAGGAAGCAATGGTAGAGGAGCAAATATCTAAGTTGTCACAGGATATTGGAGAGATGTGGTTGAGACT AGTACAGGGTCTAAGGAAGGTGTGTTTAGACCAGAGAGAAGAGGTCAGAAATCATGCTTTATTATCTCTGCAGAGGTGCT TGACAGGAGCTGATGGCATTTATCTCCCATATGGTTTGTGGTTACAATGTTTCGATCTTGTGATCTTTACTGTGCTTGAT GACCTGCTAGAGATTGCACAGGGACACTCTCAGAAGGATTACCGCAACATGGAAGGAACCCTTATCTTAGCAATGAAGCT CTTGTCCAAAGTATTTCTCCAGTTACTCCCAGATTTATCACAATTGACAACCTTCTGCAAGCTATGGTTAGGCGTACTGA GCCGAATGGAAAAATACACGAAGGTGAAGGTTAGGGGAAAAAGAAGTGAGAAGCTTCAAGAGACAGTTCCTGAGCTTCTT AAAAACTCCTTGATTGTTATGAAGATGCGTGGTATACTGGTGCAAAGGAGTGCCTTGGGTGGTGATAGTCTGTGGGAATT AACATGGCTTCACGTGAATAACATTTCACCATCACTGCAACTTGAGGTGTTCCCTGAGCAGGATTCTGAACATTTGCAGC ATAGACAAGGTGAATCAGTAGGAGGTTTGGTGCCTGATAATTTGGGTTCTGTTCCTTCGAGTGAAACTGGCAATCGTGTA GATGATGGTCATTGTGGTTAA
CDS sequence (LotjaGi6g1v0064200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAAACACAGCAATAGCTATTAGTGGCAAGGATGGTGTACACTTTGACATGCATCTGATGACTGAACCATATGG TGTTCCTTGCATGGTGGAAATATTCCACTTTTTGTGTTCTTTGCTGAATGTCGTTGAGCATATGGAAATGGGACCTAGAT CAAACACTGTAGCATTTGATGAAGATGTACCCCTCTTTGCTTTAACTTTGATTAATTCTGCTATAGAACTTGGAGGGCCT TCTATTCGGCGTCACCCAAGGTTGCTGAGCTTAATTCAAGATGAACTGTTTCATAATCTGATGCAATTTGGTTTGTCAAT GAGTCCCCTTATACTTTCAATTGTGTGTAGCATTGTTCTCAATCTTTATCACAATCTTCGTCCAGAACTCAAATTACAGA TAGAAGCATTTTTTTCTTGTGTCATCTTGAGACTTGCACAAGGCAGATATGGGGCTTCTTACCAGCAGCAAGAGGTAGCC ATGGAGGCCCTCGTCGACTTCTGCAGGCAAAAAACGTTTATGGTAGATATGTATGCTAACTTTGACTGTGACATAACTTG CAGTAATGTCTTTGAAGACCTTGCTAATTTGTTGTCCAGAAGTGCATTTCCTGTGAACTGTCCATTGTCTTCCATGCATA TTCTTGCTTTGGATGGTCTTATTGCTGTCATACAGGGAATGGCTGAAAGAATAGCCAATGGATCTGTAAGCTCAGAATAT TCTCCAGTGAATCTTGAAGAGTATACCCCATTCTGGATGGTGAAATGTGAGAATTATAATGATCCAAATCATTGGGTTCC TTTTTCCCGCCGAAGAAAGTACATAAAGAGAAGATTAATGATTGGTGCTGACCACTTTAATCGTGATCCTAAGAAAGGTC TTGAGTTTCTCCAGGGAACACATCTTTTGCCTGACAAACTTGATCCCCAAAGTGTTGCTTGCTTTTTCAGATACACTGCT GGGTTGGATAAGAATCTTGTTGGTGATTTCCTAGGAAACCATGATGAATTCTGTGTTCAGGTTCTTCATGAATTTGCTGG AACATTTGATTTCCAAGACATGAACTTAGATACAGCACTGCGTTTATTTTTGGAGACTTTCAGACTGCCTGGAGAATCAC AAAAGATTCATAGGGTGCTTGAAGCCTTCTCTGAGAGATATTATGAACAGTCACCACATATCCTAGCTAACAAGGATGCT GCTCTTGTGTTATCTTATTCAATGATAATGCTTAATACAGATCAGCACAATGTGCAGGTTAAAAAGAAGATGACAGAAGA GGATTTTATCCGAAATAATAGGCATATAAATGGTGGCAATGATCTTCCTCGAGATTTCCTATCAGAGATTTACCATTCAA TTTGTAAGAATGAAATCCGTACAACCCCTGAACAAGGTGTTGGATTTCCCGAAATGACTCCAAGTCGATGGATCGATCTA ATGCATAAGTCAAGAAAAACTGCTCCATTTATTGTATCTGATTCCAAGGCCTACCTTGATCATGATATGTTTGCCATAAT GTCAGGTCCAACTATTGCTGCCATCTCTGTGGTGTTTGATCATGCTGAACATGAAGAGGTTTGCCAAACATGTGTGGATG GATTCCTAGCTGTTGCTAAGATTTCTGCTTGCCATCATCTTGAAGATGTTCTTGATGATCTGGTAGTGTCTCTTTGTAAG TTCACTACGCTCTTAAACCCGTCATTAGTTGAGGAACCAGTTCTTGCCTTTGGAGATGACATGAAAGCAAGAATGGCAAC TGTAACTGTATTCACAATTGCAAATAGGTATGGTGATTACATACGCACAGGTTGGAGGAATATTCTTGATTGCATCTTAA GACTGCACAAGCTTGGTCTTCTTCCTGCCCGTGTTGCCAGTGATGCAGCTGATGAGTCAGAACTTTCTGCTGAAACTGTG CATGGAAAGCCTATTGTGAATTCCTTATCCTCTGCTCATTTGCAGTCTATTGGCACTCCTAGGAGATCTTCAGGATTGAT GGGTAGGTTTAGTCAACTCTTATCTCTTGACACTGAAGAGCCAAGATCACAACCTACTGAACAACATGCTGCTCATCAGC GCACCCTTAACACGATAGAGAAGTGTCACATTGACAGCATATTCACAGAGAGTAAATTTCTGCAAGCTGAATCTCTATTG CAGCTTGCCAGAGCGCTCATTTGGGCAGCAGGTCGACCTCAGAAAGGGAACAGCACACCTGAGGATGAAGATACAGCAGT ATTCTGCCTGGAGTTACTGATTGCGATCACTTTGAATAACAGGGATAGAATTGGCATTCTCTGGCAGGGTGTTTACGAGC ACATATCTAATATTGTTCAGTCAACTGTAATGCCCTGTGCCTTGGTAGAGAAGGCTGTTTTTGGACTTCTGCGGATTTGT CAGCGGTTGCTCCCCTACAAGGAGAACATTGCAGATGAACTTTTGAGATCATTGCAACTTGTCTTGAAGCTTGATGCCCG AGTTGCTGATGCATACTGTGAGCAGATTACTCAGGAAGTCAGTCGCCTTGTGAAGGAAAATGCTTCTCATATAAGATCTC AGTTAGGATGGCGCACAATCACCTCCCTACTTTCAAACATAGCTAGGCACATAGAAGCATCTGAGGCAGGGTTTGATGCA CTGTTGTTCATAATGTCCGATGGTGCCAACTTAGTTCCAGCTAATTATGTTCTCTGTATAGATACTGCGAGGCAGTTTGC TGAGTCTCGTGTTGGGCAAGCTGAGCGATCTGTACGAGCACTGGATCTCATGGCAGGATCTGTCAGTTGCTTGGCCCGGT GGACTACCGAGGCTAAGGAAGCAATGGTAGAGGAGCAAATATCTAAGTTGTCACAGGATATTGGAGAGATGTGGTTGAGA CTAGTACAGGGTCTAAGGAAGGTGTGTTTAGACCAGAGAGAAGAGGTCAGAAATCATGCTTTATTATCTCTGCAGAGGTG CTTGACAGGAGCTGATGGCATTTATCTCCCATATGGTTTGTGGTTACAATGTTTCGATCTTGTGATCTTTACTGTGCTTG ATGACCTGCTAGAGATTGCACAGGGACACTCTCAGAAGGATTACCGCAACATGGAAGGAACCCTTATCTTAGCAATGAAG CTCTTGTCCAAAGTATTTCTCCAGTTACTCCCAGATTTATCACAATTGACAACCTTCTGCAAGCTATGGTTAGGCGTACT GAGCCGAATGGAAAAATACACGAAGGTGAAGGTTAGGGGAAAAAGAAGTGAGAAGCTTCAAGAGACAGTTCCTGAGCTTC TTAAAAACTCCTTGATTGTTATGAAGATGCGTGGTATACTGGTGCAAAGGAGTGCCTTGGGTGGTGATAGTCTGTGGGAA TTAACATGGCTTCACGTGAATAACATTTCACCATCACTGCAACTTGAGGTGTTCCCTGAGCAGGATTCTGAACATTTGCA GCATAGACAAGGTGAATCAGTAGGAGGTTTGGTGCCTGATAATTTGGGTTCTGTTCCTTCGAGTGAAACTGGCAATCGTG TAGATGATGGTCATTGTGGTTAA
Protein sequence (LotjaGi6g1v0064200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDENTAIAISGKDGVHFDMHLMTEPYGVPCMVEIFHFLCSLLNVVEHMEMGPRSNTVAFDEDVPLFALTLINSAIELGGP SIRRHPRLLSLIQDELFHNLMQFGLSMSPLILSIVCSIVLNLYHNLRPELKLQIEAFFSCVILRLAQGRYGASYQQQEVA MEALVDFCRQKTFMVDMYANFDCDITCSNVFEDLANLLSRSAFPVNCPLSSMHILALDGLIAVIQGMAERIANGSVSSEY SPVNLEEYTPFWMVKCENYNDPNHWVPFSRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTA GLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDA ALVLSYSMIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPRDFLSEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDL MHKSRKTAPFIVSDSKAYLDHDMFAIMSGPTIAAISVVFDHAEHEEVCQTCVDGFLAVAKISACHHLEDVLDDLVVSLCK FTTLLNPSLVEEPVLAFGDDMKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELSAETV HGKPIVNSLSSAHLQSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQHAAHQRTLNTIEKCHIDSIFTESKFLQAESLL QLARALIWAAGRPQKGNSTPEDEDTAVFCLELLIAITLNNRDRIGILWQGVYEHISNIVQSTVMPCALVEKAVFGLLRIC QRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKENASHIRSQLGWRTITSLLSNIARHIEASEAGFDA LLFIMSDGANLVPANYVLCIDTARQFAESRVGQAERSVRALDLMAGSVSCLARWTTEAKEAMVEEQISKLSQDIGEMWLR LVQGLRKVCLDQREEVRNHALLSLQRCLTGADGIYLPYGLWLQCFDLVIFTVLDDLLEIAQGHSQKDYRNMEGTLILAMK LLSKVFLQLLPDLSQLTTFCKLWLGVLSRMEKYTKVKVRGKRSEKLQETVPELLKNSLIVMKMRGILVQRSALGGDSLWE LTWLHVNNISPSLQLEVFPEQDSEHLQHRQGESVGGLVPDNLGSVPSSETGNRVDDGHCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 2 | 1149 | 1148 | 0.0 | – | |
| PANTHER | 2 | 1149 | 1148 | 0.0 | – | |
| Phobius | 26 | 45 | 20 | - | – | |
| Pfam | 29 | 190 | 162 | 4.9E-36 | ||
| Phobius | 46 | 64 | 19 | - | – | |
| SUPERFAMILY | 60 | 1072 | 1013 | 1.41E-6 | ||
| Phobius | 65 | 82 | 18 | - | – | |
| Phobius | 83 | 102 | 20 | - | – | |
| Phobius | 103 | 123 | 21 | - | – | |
| Phobius | 124 | 1180 | 1057 | - | – | |
| ProSiteProfiles | 268 | 457 | 190 | 40.519 | ||
| Gene3D | 271 | 349 | 79 | 3.8E-23 | – | |
| SMART | 272 | 459 | 188 | 3.1E-98 | ||
| SUPERFAMILY | 273 | 462 | 190 | 1.83E-72 | ||
| Pfam | 276 | 459 | 184 | 7.3E-72 | ||
| CDD | 276 | 459 | 184 | 4.13304E-87 | ||
| Gene3D | 351 | 469 | 119 | 9.0E-49 | ||
| CDD | 517 | 558 | 42 | 0.00801802 | – | |
| MobiDBLite | 1146 | 1180 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ARF guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with the GTPase ARF. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. | ||
| Biological process | Regulation of ARF protein signal transduction | Any process that modulates the frequency, rate or extent of ARF protein signal transduction. |
Expression pattern of LotjaGi6g1v0064200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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