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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0065900 |
| Transcript ID | LotjaGi6g1v0065900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I3SMI4|I3SMI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0065900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:12527683..12530201) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTATTCCCACACGAAAGGCCGCTCTAAGTGCCTTGTCGTTCGTTTGTTCTGTTTGTGCTCCCACTCATTGTTGGCCT CTCAAAACCAAAATGCCCTTCTCTTTTCTCTCTTTCTCTCCCATCCCTGCATTGTGTTCCTCCTTCATCACCACCCCGCT TTGCTTTCACCATCCTTTTATGGTTAGTGTTCTTCATTCTTTTCTCTCTTCTTATGCCATATTTGAATTCTAACGATTGC TTGAATATAATGGGGACAGGTCTCGGGTGGTGTCGGGTGTTGGAAAAATGGCATACAAAGTGGACCATGAATACGATTAT CTCTTCAAGATTGTACTCATTGGAGACTCTGGTGTTGGGAAATCCAATATACTCTCCAGGTTTACCCGAAATGAGTTTTG TTTGGAGTCCAAGTCTACCATTGGGGTCGAATTTGCAACTAGAACATTACAGGTTGGTTTTTTATTCCCTGAAATTTTGT GAAATATTTGCTAGTTTTCTGTTAATCTTCATGTAAGAGATAGTGGGTGTAGCTCAAAAACTTACATTTCTGCAATATTT ATTGGGATTTTTTATTGTTTCTTAGCCCCTCTATTAGGTTGAGAAGGTGTTAGAAATATTAGATAGAACTATTCATGTTC TTATTCCAATATAGTTTAAGCTTATGGATAATATAAGTAGATTTATGATATGTTACGCCATAAAAAAGTTGAATTTCTCA TGAAGGTAGGTGAGAACTGTGCATTGTTCATGCTTCAAGTCCAATTGCCTATTGTGTAAGGAATGTGTTAAAAGTATTGT ATAAAAATATTTATATATTTTCACCCAACCCAACAACTTATGTTTTTAGAATAGTTGATTCGTGACATAAGGACCTGAGA AATAAAGGTCCGAGAGCAAGAGAAGATGAAGGAAAATGTTAGTTGCGTGTGACTTTGTATACATAATCTTAGAGAATGTG CACCATTGAAGTTGATGAATATATAAGTGCAAAAGAGATTGAAACAAGTGAATGAATGGTGATGACCAGAGTTGTATAAA AAAAAATTAATTTGAAAAAATGATCTGTGTAAGAAGTATCATCCCAAGATGAATAAGCTTGGAAGAAACTTTTCAAACAG AAAGATAGGTGTTATTAGCAAAAGAAAAAGAGAACAATACTTGTTACAATGAAGCAAGCAAGATATTTTTTATTTTGGAT TTCTCTTACATGTTTCATGATTGTAATTTTGTACTGTTTGAAGAATAAGGAGTAACTAAATTTCCAGTGCTCATGTATTA TGAGAACGCTTGCAGTTTTGGTGTTGACATTGTGTGTCATTTGATCCATGTAGCCTAAATAGTGGAAAAGTATTGGGTTT TCAAGTGTTAGTTTGGAGTCCTCTTGTTTAAGAATGAGCTAGATAAAGACTATTTAAGATTTGAGTCCCACATACCCAAT GCCTTAAAATTTTAGCTAAAGATATGGTGTCCAATTCTTTTGATGGTCTTCATCACTGTTGGTCCATTGGTGCATGCTCT CCTGCTTTGGGCTCTTTTGTCTCCCCAGCAAAAAGTATTTTGCTTCTTGTTGCTCGCAGTTTTGGTATATAGTACTTATG CTGTTTCCTACATGAAGAATTAATTCCTTGGAGTACATGCTTGTTGGACACAGGTGGAGGGGAAGACTGTAAAGGCACAA ATATGGGACACTGCTGGTCAAGAGAGGTACAGAGCTATTACTAGTGCATACTACAGAGGAGCTGTTGGTGCCTTGTTGGT GTACGACATAACAAAAAGGCAAACATTTGAAAATGTGCAGAGGTGGCTTCGCGAGCTAAGGGACCATGCCGACGCCAACA TTGTTATTATGATGGCCGGAAATAAGTCGGACCTGAATCACCTGAGAGCAGTCTCATCAGAAGATGCTCAAAACTTGGCT GAGAAGGAGAGTCTGTCATTTCTAGAGACTTCAGCATTGGAGGCGTTGAATGTTGAAAAGGCATTCCAAACCATTTTGTT TGATATATACCAAATCATAAGTAGAAAGGCATTGGCAGCACAGGAGGCAGCTTCTACTACTAGCCTCCCTCATGGGACTA CCATAAATGTGTCAAATTTGTCAAGTAATGTGGAGAAGAAAACATGTTGCTCCAATTGAGAGGGTAAACTGTGTAGCAAT GGTTAGGAGGAGCAAGTTTTTCAGGGAATTCTTTTTGTATTTGAAAACACAAATGACATGAGAAATGGATGCTACCTTCT GCCAGGTTTTCTTGTATGCAACAAGCACAACATTAACATGCAATTTATGTTTCTGGCTTTGGCATACTGATTCTGAAATG CAGACAATGGGATTTCAGAGTATGGTGTGGTCTTAGTACAGTCATGGATTAGAAGTTGTAATTAAAGCATTGTAAGTGTA CATTGTCCCTTATTTTGCTCGTTTATCTTCCAGTTTATTCTTCATATGAACTTGCTAATATTGACAAGAGATGCTAGAAA CTGTTTATTTTAGATGATTGATTGTGCACCCAATAACCA
CDS sequence (LotjaGi6g1v0065900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATACAAAGTGGACCATGAATACGATTATCTCTTCAAGATTGTACTCATTGGAGACTCTGGTGTTGGGAAATCCAA TATACTCTCCAGGTTTACCCGAAATGAGTTTTGTTTGGAGTCCAAGTCTACCATTGGGGTCGAATTTGCAACTAGAACAT TACAGGTGGAGGGGAAGACTGTAAAGGCACAAATATGGGACACTGCTGGTCAAGAGAGGTACAGAGCTATTACTAGTGCA TACTACAGAGGAGCTGTTGGTGCCTTGTTGGTGTACGACATAACAAAAAGGCAAACATTTGAAAATGTGCAGAGGTGGCT TCGCGAGCTAAGGGACCATGCCGACGCCAACATTGTTATTATGATGGCCGGAAATAAGTCGGACCTGAATCACCTGAGAG CAGTCTCATCAGAAGATGCTCAAAACTTGGCTGAGAAGGAGAGTCTGTCATTTCTAGAGACTTCAGCATTGGAGGCGTTG AATGTTGAAAAGGCATTCCAAACCATTTTGTTTGATATATACCAAATCATAAGTAGAAAGGCATTGGCAGCACAGGAGGC AGCTTCTACTACTAGCCTCCCTCATGGGACTACCATAAATGTGTCAAATTTGTCAAGTAATGTGGAGAAGAAAACATGTT GCTCCAATTGA
Protein sequence (LotjaGi6g1v0065900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA YYRGAVGALLVYDITKRQTFENVQRWLRELRDHADANIVIMMAGNKSDLNHLRAVSSEDAQNLAEKESLSFLETSALEAL NVEKAFQTILFDIYQIISRKALAAQEAASTTSLPHGTTINVSNLSSNVEKKTCCSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 214 | 211 | 5.6E-122 | – | |
| PANTHER | 4 | 214 | 211 | 5.6E-122 | – | |
| Gene3D | 5 | 214 | 210 | 6.2E-68 | – | |
| SUPERFAMILY | 8 | 179 | 172 | 8.69E-59 | ||
| ProSiteProfiles | 8 | 214 | 207 | 35.752 | – | |
| SMART | 10 | 176 | 167 | 5.8E-28 | – | |
| CDD | 10 | 174 | 165 | 1.98243E-126 | – | |
| TIGRFAM | 11 | 169 | 159 | 1.0E-39 | ||
| SMART | 13 | 176 | 164 | 6.8E-112 | – | |
| PRINTS | 13 | 34 | 22 | 1.9E-40 | – | |
| Pfam | 14 | 174 | 161 | 7.8E-61 | ||
| SMART | 15 | 172 | 158 | 1.5E-10 | – | |
| SMART | 18 | 201 | 184 | 1.1E-6 | – | |
| PRINTS | 36 | 52 | 17 | 1.9E-40 | – | |
| PRINTS | 54 | 76 | 23 | 1.9E-40 | – | |
| PRINTS | 116 | 129 | 14 | 1.9E-40 | – | |
| PRINTS | 151 | 173 | 23 | 1.9E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi6g1v0065900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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