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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0068900 |
| Transcript ID | LotjaGi6g1v0068900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin protein kinase family protein; TAIR: AT5G01090.1 Concanavalin A-like lectin family protein; Swiss-Prot: sp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7; TrEMBL-Plants: tr|I3T9B8|I3T9B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0068900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13221021..13223369) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTGTGATATTTGAGTAACTTTGAAGAAATTTAGAGTACCTTTATGTAGTTGAGTGTGATTAATAAAAGTTTGTTC CTTTTTGTTTTGTGATTGAATTGAACGGTGGACATGAAGAAAAAAAGCACATAGAGTTTGAGTGGTCGACACAAAACCAA GAGAAAAAAGTAACATGCCGAGAGGGAGAGAAAGAAAGAGAGAAGAAGAAACTTTCATGGTTGGCGTTGGTGTCCCTTGG AATCACAAACATAGCGGCATGGTTACATTCTCCCTCTTCTTCATCCTCTGTTCCTTCTTCATCCTCCTCCAACCTTCCCT CTCTTCCTCCTCCACCACCACCCTCACCGGTTTCGACTCCGACATCGACCTCTTCTCCGATGCCGAGTCCGTCTCCGGTA CCCACGTGCGCCTCACGCGCCACTCACCTTCCACCTCCGGCCTCCTCCTCCGCCGTCAGCCACTCACCTTAACCGCCGCC ACCTCAATCTCCGTTGAGTTTTCATTCTCTGTTTCCCCCGACGCCGGCGACGGCCTCATCCTCCTCCTCGCCCCCGGCGA ATTCTCCGACTCGTTCCCCGGTAGCGGCTCCTTCGGGATCCCCGGTTCGGTCAAGAGCTACCTCGGCGTCGAGTTTGACA CCACCGTCGGGATCGACGTTGGTAGCCGCGCCTCCGTCGCGGTTGCGAATGGTTCCGCGTTGAATCTGGTTGTCAATAAT GGGGAAAAGGTTAACGCGTGGGTTGACTACAAGGCTGGTTCGAGAACGTTGGAGGTTCGTTTGAGCAAATGGGGTGAACC CAGATCTGAAGATCCAATCGTTTCGCACCGCATTGATCTGTTCAACTTCTGGAATCGTAAACCTGTGTTCGTGGGTTTGA GTTCTTCCAATGATGCGAACTCGGTGCAGGTTGTTAGTGTTTATTCATGGAAGGTTAGCGTGAGGGAGGTTTCGAAATCG TTGCATTCTCAACCTGCGGATCCTAGAAGATTCTCTGAGGAGAGGAAGTTTCGTACGTTGACTGTTCTTGCTGGGGTGAT ATTTGGAACTGTGTGTGTTGCTTTGGTCACGTTTGTGGTGCTGTTCATGTGGGTCATTTTCTTCCATAAGCATGAAGAAG AGTCTCTGGCTAAACTCCCTAACCACCCTGCAGATGTAAGGTATGAGAGAATTGATGTGTCTGTTGAGAAGCATACAAAA GATGATGAAAATTAGAGGCATAGGTTATGTGATTTGTGATTTTTTAGATGATGCTATTGTTGTTGTTGTTGTTGTTGTTC TTGTTGTTGTTGTTGTTGTTGTATATCTATATGATGTGTAAAATTCTTTTGTAGGAGATTATGATATTGTAGGTTTACTG TAACCAATCTTGTAAAATATTTGAACATCCTGTTTTGGGAGCCACTTTGATTACAATCTTGTTTATCAATTTTTGCACTT GGAATTTTGTAATCTCAGATGATGCTTAGCTTAACAGTTGTGTACTTGTGTTACCATATATTGCTACTTTTTCCCCTTCA TTGTGTGTTGGGGATGACTGAATATTTATTATTGATATCAGTAATTTCGTATTATATTAGTAGATGTGTGAAGGATGTTT GTGAGGTATGAATAAGAAATGTGGGAGATTTGATACAGATGTAAGGAATTTGTTTTCAATTGGAAACTAGGAAAGGTGTA AGTGTGTTTGCTTGTTATATTTGTTGGAGAATTGTCAGGGTTATGAGAATGAGAATGAGAAAGTAAGAGGTTGTTATGCA AGGAAGCCTATGGGCTAGATTTGTATTGGAAAGTAAAATTAACTCTTCTCATATTTAGACATAGTTATGCTGTTAAATTG TGCCTAATTTGTTTATGTTTTACCGAATTAGTAATATTTGTGTATAAAGGAGTTGAAAAGGATGTGAATGTGAAATTCCC CAATGAGATTGAGGGAAGGGATGTGGTAGTCTCCCACTATTATGGGGTCACATAATAGTTGTTAGAAAATAAGCTCCATT TACCCTGAGCCTGAAGTTCTGTATCCCTGATCCCTCCAAACTCCCATGTTCTGAGTCATGCCAAGAGACATAATAGGTCT GGGCATGGCCCTTATTCCAAGACATAGGTTCTTTATGAATAAAGAAAAAATCTAGTTCAAAGGGTCTTTCTCAGTACTTG TTTGTTTGGATTTATGTTTAACTCAACGTCAATCCACGTTTGAACCAATGGGGTAAAATCCTGCTTCTCTGTTGATGTGT GGGATGTGTATACTACTTTCTCATTTGTGTATGCGAATGGGAATCGAAACGGGCACTACAACAACTGCTTTACAGCAACT GCTTTTCTTCACTAGTTAAATGTGGAAAG
CDS sequence (LotjaGi6g1v0068900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAGAGGGAGAGAAAGAAAGAGAGAAGAAGAAACTTTCATGGTTGGCGTTGGTGTCCCTTGGAATCACAAACATAG CGGCATGGTTACATTCTCCCTCTTCTTCATCCTCTGTTCCTTCTTCATCCTCCTCCAACCTTCCCTCTCTTCCTCCTCCA CCACCACCCTCACCGGTTTCGACTCCGACATCGACCTCTTCTCCGATGCCGAGTCCGTCTCCGGTACCCACGTGCGCCTC ACGCGCCACTCACCTTCCACCTCCGGCCTCCTCCTCCGCCGTCAGCCACTCACCTTAACCGCCGCCACCTCAATCTCCGT TGAGTTTTCATTCTCTGTTTCCCCCGACGCCGGCGACGGCCTCATCCTCCTCCTCGCCCCCGGCGAATTCTCCGACTCGT TCCCCGGTAGCGGCTCCTTCGGGATCCCCGGTTCGGTCAAGAGCTACCTCGGCGTCGAGTTTGACACCACCGTCGGGATC GACGTTGGTAGCCGCGCCTCCGTCGCGGTTGCGAATGGTTCCGCGTTGAATCTGGTTGTCAATAATGGGGAAAAGGTTAA CGCGTGGGTTGACTACAAGGCTGGTTCGAGAACGTTGGAGGTTCGTTTGAGCAAATGGGGTGAACCCAGATCTGAAGATC CAATCGTTTCGCACCGCATTGATCTGTTCAACTTCTGGAATCGTAAACCTGTGTTCGTGGGTTTGAGTTCTTCCAATGAT GCGAACTCGGTGCAGGTTGTTAGTGTTTATTCATGGAAGGTTAGCGTGAGGGAGGTTTCGAAATCGTTGCATTCTCAACC TGCGGATCCTAGAAGATTCTCTGAGGAGAGGAAGTTTCGTACGTTGACTGTTCTTGCTGGGGTGATATTTGGAACTGTGT GTGTTGCTTTGGTCACGTTTGTGGTGCTGTTCATGTGGGTCATTTTCTTCCATAAGCATGAAGAAGAGTCTCTGGCTAAA CTCCCTAACCACCCTGCAGATGTAAGGTATGAGAGAATTGATGTGTCTGTTGAGAAGCATACAAAAGATGATGAAAATTA G
Protein sequence (LotjaGi6g1v0068900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRGRERKREEETFMVGVGVPWNHKHSGMVTFSLFFILCSFFILLQPSLSSSSTTTLTGFDSDIDLFSDAESVSGTHVRL TRHSPSTSGLLLRRQPLTLTAATSISVEFSFSVSPDAGDGLILLLAPGEFSDSFPGSGSFGIPGSVKSYLGVEFDTTVGI DVGSRASVAVANGSALNLVVNNGEKVNAWVDYKAGSRTLEVRLSKWGEPRSEDPIVSHRIDLFNFWNRKPVFVGLSSSND ANSVQVVSVYSWKVSVREVSKSLHSQPADPRRFSEERKFRTLTVLAGVIFGTVCVALVTFVVLFMWVIFFHKHEEESLAK LPNHPADVRYERIDVSVEKHTKDDEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 26 | 45 | 20 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| PANTHER | 32 | 342 | 311 | 6.7E-113 | – | |
| PANTHER | 32 | 342 | 311 | 6.7E-113 | – | |
| Phobius | 46 | 281 | 236 | - | – | |
| Gene3D | 51 | 257 | 207 | 1.5E-30 | – | |
| Pfam | 58 | 266 | 209 | 2.9E-27 | ||
| SUPERFAMILY | 59 | 261 | 203 | 3.12E-27 | ||
| Phobius | 282 | 309 | 28 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 310 | 346 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi6g1v0068900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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