Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0069700 |
| Transcript ID | LotjaGi6g1v0069700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit; TAIR: AT5G58030.1 Transport protein particle (TRAPP) component; Swiss-Prot: sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5; TrEMBL-Plants: tr|I3SPD0|I3SPD0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13313795..13317260) extracted from Lotus japonicus Gifu genome v1.2.
TTATTTACACTACAGGTTGGTTATTGTACCTGCTAAGCAGGTAATTTAATTTAGTGTGCTGTATTGATACATCACATGGG CACTACCTATTATAACAAGTCAAATTTGCTCTTGTATAGTGCAAGACCTAGTGTGCACTTGCACCCTATAAGCCACCACC CATCACATCACATCACATCACATGTGAGGTGTGAGAATTGGTGCAAGCAAGAGAAGAGAAGAGAAGAGGAAGAGAATGAT CGGCGTCGGAAAGATGAAACAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTATTCAATTTCC CCCTTTTTGTTTTTTCCATCGAGCCTAATTTGATTTTGATGATGCAGGTTAGTTTGAGTGCGTTCGCGTTCTTGTTCTCT GAGCTTGTTCAGTACAATCAAACCCAGGTCGACAACATCGGCGAGCTCGAACGAAGGTCATCTCATCCCTCTCTAACTTC ATCTTCAGTACTAAATGGATCCAGGATAGTCGTCAAGAATATGTGTTTGATATTTTACAATTAAATCCACCAGGTTGGAG GATGCTGGATATGCTGTTGGGGCTCGAGTACTCGAGCTGCTTTGCCACAGAGAAAAGGTACGGCGCCGAGTTTTGTAAAC AATCCTTGTACTTTATATATCATAAGCTCATTGTTGGACTTGGAACACACAGACAGATAGATGAGAGGAGAGGGATTGCT ATTTTATAGCAAAGTTAACAACTAATAAGACTAGCTTAGCAGTACCACTAATAAGTAATAACAGACACTCAATTTTCAAC TATCTAATTGTTTCAATCACTTCTAACGCTCATGACAAAGGTTTTCCATATGACTTATCACTTGGATCTAAGAAATGGAA AATGCGGGGGAGCTCATCTCATATAGTCTAGCTAGGACCGGGGCAGTTTCCTAAGCATGTATATGCTTTATATTGTACTT AAACTTGATTATTTGGTATTAACATACTGCCAAATTGTAGTCTTGTCAGTGTTTGTACAATCTAGCTACCCATGATTATA ATCTAGGATTCTCATGTGAACCTTTAGACTAATATCAGTCTTATCAGTTCTTTTCTCTTTACCACCAATAGACTTGTCCA GACGTCCACCCTTTTGGCTTGTTAACATTCTCTTTCTAAAATGCAAGAGTCGATACTCATCCATTATTCTGTCAAATACA ACTTTGTCCACAACTAGATATCGTGGTAAAAATTGGCTTATATATTCATTTGGGCTATAAAGTTGATCTTTTGTATATAT TGGACTTGACAGTTAGTAATGAGTTTGACTGTAATGTTTGAATATTTCTATATTTTTGCATGGAGTTGGCATGATTGATA TAGCAACATTATTCTGAAATTACAGGGAAACAGAAGGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTGCACAGTACAG TGTGGAAAGTATTATTCGGAAAGGTGAGCTCCTTTATCAAAATTTATTTTTCCCCACTTCCCCCTATTTTATCAATAATT TATGAGAAGGTGAGTAAAATACAATACATGGAATACCCTTGCTTAGAGACATGAGCATTGATCCTTTCTTGTCCTAGACT CCTAGTATGGAATACCTTTTAAGACTGACAAAAAGTATCTAAGTTCTAGCGTCTATGTCCTTCAGAAAATAAATATAAAC ATTAAAATCCTGAAAACAGTTTTATCTTAGCTATAAAACATGCAAGATAGAATTAAATGATACGATGGGCTGTGTTTAAC GCAAAGCTGTTTTGGTTGTTCATTCTAAAGCTTGTATGTGTTTTTACGGTATTTTAGCTAGTTTGATTCTTAGGTTCGCC TTGATATGGCCCTTCAGACGAGAAGAACTATTTATCAGTGTTAAGCCATAGACTCTCTAGATGTTGAGCAAATGAATGTG TTTTGGTTTCATTTTACATTCTATTGTTCAGTCTTATATGCCACTCATAGATGTCTATTGAATTGACCATGACTTTGGTT CTGGTAGGGTACATACTTAGTTGGGTAGATTATCTACATGTTTTTTTTAACTAAGAATCATCAATACACTGATAAAGTCT TGGTTCTTAATCAACATGTATATTTTTGTTATTTGTGTTCTATATCATGATTTCGGCTCACTTCATAGATATGGTGTTTG TGATCTAAAACACAAATACAGAATCAAAATGCATCATTAACTGTGAGAATTATTCAAAACCTAGACATAGATATGTATTT ATAATCATGGTGTAAGGGAGGTAACTTCAGCAAATTTTACAACTAAGCACATAAAAGCTGTGTAAAGTTTGCTAAGCAAA AACTATTGGCTATTTTATACCCTGTTGTGGTTCATATACTCATTCTAATATGTACATTGGCAACTCAATTTTTTTTAGCA CCTCCCTGAGTTTCAATAATTTTTTGTCATTATATTAGGTAGCTGACTCGCTGGAGAAAGGAACTGAACATGAAGATGAA TACATGATCAGTGAAAAAGAGCTCCTAGTAAACAAGTAAAATTTCAGTCTCAATGTTATATTTGAACTGTTACATATACC GGATTTTTGTCCATCTATTAGTTGTGAGCTTATGGATTTCTGGTTTATAGATTCATTTCTATCCCAAAGGACATGGGGAC GTTTAACTGCGGAGCATTTGTTGCTGGAATAGTACGGGTAAGCTCTTTGCTTCATGCAATTACCTTCTAGTTATGTGATT CTTATTAGAGAAGGTGCAATTGAGTGCTTTTTGTTTTCCATTCATCAATGAAGGGTGTCTTGGATAGTGCCGGATTTCCA GCTGTTGTAACAGCTCATTTCGTGCCCATGGAAGGTCAGCAACGGCCTCGGACGACGATTTTGATAAAATTCGCTGAGGA GGTAAATAGTCATTGATTTTGCTTTTGCTCTTTGCACCCCAACACACCCATTCTTATCTGAGTTTCTTATATGGCTTTCT ATTTTCTAGGTGTTACGTAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAAGATATTTATGATGCTGTAC ACCAATATAGAATGATGTGGAACTTGCGTACTTTGCATGTGAACGCAACTTAGTATTTTCGACAGCCTTATTCTAAACTC TTGTTTTTCATTCCAATGTATGTTATGCTTTGAAGTCAAGAATTATCCTTACTGTCCTAAATTATGATGTACAAAAAGAA AAAGTCTGGTGTTTCTTAATTAATTTCAATTCCTCCTGTGTTATTTACACTAAGAAATTTGGATGGCATGCTTTCATTTT TCCTCCCCCCATTTTCTCATCTCGTCCAAACAAGGGAAAAAGTAATGGATTTGTCCAAAACTATAAAGCATAGAAGCTCA TCATGAGCTACAGAGAATACATAGGACTCTCCAGTGCTCCGTTTGCACTGTCTATTTTGTTTTAAGAACTTTCTATTTTG TGTCTGTTGAGGTATTGAAAATCTAA
CDS sequence (LotjaGi6g1v0069700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGGCGTCGGAAAGATGAAACAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTATTCAA TTTCCCCCTTTTTGTTTTTTCCATCGAGCCTAATTTGATTTTGATGATGCAGGTTAGTTTGAGTGCGTTCGCGTTCTTGT TCTCTGAGCTTGTTCAGTACAATCAAACCCAGGTCGACAACATCGGCGAGCTCGAACGAAGGTTGGAGGATGCTGGATAT GCTGTTGGGGCTCGAGTACTCGAGCTGCTTTGCCACAGAGAAAAGGGAAACAGAAGGGAGACACGGCTGTTGGGTATTCT TTCTTTTGTGCACAGTACAGTGTGGAAAGTATTATTCGGAAAGGTAGCTGACTCGCTGGAGAAAGGAACTGAACATGAAG ATGAATACATGATCAGTGAAAAAGAGCTCCTAGTAAACAAATTCATTTCTATCCCAAAGGACATGGGGACGTTTAACTGC GGAGCATTTGTTGCTGGAATAGTACGGGGTGTCTTGGATAGTGCCGGATTTCCAGCTGTTGTAACAGCTCATTTCGTGCC CATGGAAGGTCAGCAACGGCCTCGGACGACGATTTTGATAAAATTCGCTGAGGAGGTGTTACGTAGAGAAGCAAGATTAG GCTGA
Protein sequence (LotjaGi6g1v0069700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGVGKMKQYSNVLDKPLTKGKQEVFNFPLFVFSIEPNLILMMQVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNC GAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVLRREARLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 213 | 211 | 3.7E-93 | ||
| Phobius | 30 | 54 | 25 | - | – | |
| Gene3D | 43 | 214 | 172 | 3.8E-71 | – | |
| SUPERFAMILY | 44 | 212 | 169 | 7.32E-53 | ||
| CDD | 45 | 202 | 158 | 1.13321E-97 | ||
| Pfam | 50 | 202 | 153 | 4.7E-42 | ||
| Phobius | 55 | 214 | 160 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TRAPP complex | A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of LotjaGi6g1v0069700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…