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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0071300 |
| Transcript ID | LotjaGi6g1v0071300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|C6TEZ8|C6TEZ8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0071300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13549735..13551785) extracted from Lotus japonicus Gifu genome v1.2.
CGTAACAATCTCAATTATGAAATACATTCATAAAACCTAAAATGAAAATTCAAATAGTATTATGTTATGCGTTACCCCTA AAAAGGACCCACCACCAGCCACCCTCTATCCTCTACTCTCACTTCTTAATTGTCATTAACATGAACCAACTCTCCTTATA TATAAAGCATCACATTACCCTCTTTTGTGGCATCAACATCAGCTAAGAGAGTGAGAAGAAGTTAAAATTAGAAAAGGGAG AACGACATGGAGGGGAAGGAGCAAGATGTGTCATTGGGAGCTAACAAGTTCTCGGAGAGGCAGCCCATTGGGATAGCGGC TCAGAGCCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGCTCTTCGAGCCGTCTGAGCTCACATCATGGT CGTTCTACCGAGCGGGGATAGCGGAGTTCGTGGCCACTTTTCTGTTCCTCTACATTACCATCCTAACAGTCATGGGCGTC AATAAATCTGACACCAAGTGCAAAACTGTTGGGATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTCGCACTCGT TTACTGCACTGCTGGAATCTCTGGTATATTTATTTATCAACTCTTTCCTTTCTCTTTCTCTTATAAAATAATCTACATCG CCACATATTCAAATGCACCCCACAGTGTTTAGGATAAATAGATTAGAAAAATAACACTTTATTGTTTTGAATTTTTATAG ATCAAAGAGTCTGGACTATGTATGCAGTGTGTAATTAATGTTAATGTGATGTTTTAATTGCAGGGGGTCACATAAACCCA GCGGTGACATTTGGTCTGTTCTTGGCAAGGAAATTGTCATTGACAAGGGCGGTGTTCTACATGGTGATGCAGGTGCTAGG TGCTATATGCGGCGCTGGTGTGGTGAAGGGTTTCGAGGGGAAAAAGTTTTACGGTCAGCACAACGGTGGTGCCAACTTTG TCGCCCCTGGCTACACCAAAGGTGACGGCCTCGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTCTACACCGTCTTCTCA GCCACGGATGCCAAGCGTTCCGCCAGAGACTCTCACGTTCCAGTAAGTTTCCTCACTTCTTAGTGTTTTATCGTTCAATT TAATTTTTTTTTTAATTTTAATCATATTTTTTATACATTTTTGCTATCTACATAGTAGTATTGTACCAAATAGCAAAAAG TGTTATTGAAATACATGTAAAATTAACACTTTTGAATGAATTAGCTATCCTGTACTAAATTATGTATGAGTTCCTATTGT TGAAAGAAGTTTTTACTATGGCAATGGCTCCAACTTTCTGAGTTAATTTACTAATTTGAAGTTTATGAATGAATGAAATG ATTAGATTTTGGCACCATTGCCAATTGGGTTCGCGGTGTTCTTGGTACACTTGGCAACCATCCCAATCACCGGAACCGGT ATCAACCCTGCTCGGAGTCTCGGCGCTTCCATAGTCTTTAACAAAGACCTTGGCTGGGATGACCACGTACGTTTATTCAA ATCTCTCTATCTTACAAATTAATTTATAATTATTTCAAATTTAGAATTATCTGGATGAAGTTATTGATGAACCACATCGT TTGTCCTCTTTGTACCGTATGCAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCAGCTCTTGCGGCACTTTACCACCA AGTTGTGATCAGAGCCATTCCTTTCAAATCTAGTTGATTAATCAATCAAGCCAAGTTTAATAAGTTTCATTTTATCATCA TCATGTTTTTCCTTTGTCTTTTTTTTAATGTAAAGAATTTTACATAATGTAATGTTATTAGGTGGTGCGTGATAATGGGT CAGTTTTCCTCTACTTTTAGGTTGGAAGACGGCCTAGTTCATGTGTTATGTATCTTGGTGATTGTGGTTTTGATCAAATA AAAATAACATCCTCTTCTTTGAGTTAATTTGTTTCTGTCCCACTTTTTCTTAGGCTTGTTGTGTTGTCGATCGCTACTGT AACTTGTGGCCTCTTTCAAATGAATATATGCCGTGTAACAAAAAAAAATGA
CDS sequence (LotjaGi6g1v0071300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGGAAGGAGCAAGATGTGTCATTGGGAGCTAACAAGTTCTCGGAGAGGCAGCCCATTGGGATAGCGGCTCAGAG CCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGCTCTTCGAGCCGTCTGAGCTCACATCATGGTCGTTCT ACCGAGCGGGGATAGCGGAGTTCGTGGCCACTTTTCTGTTCCTCTACATTACCATCCTAACAGTCATGGGCGTCAATAAA TCTGACACCAAGTGCAAAACTGTTGGGATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTCGCACTCGTTTACTG CACTGCTGGAATCTCTGGGGGTCACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCAAGGAAATTGTCATTGACAA GGGCGGTGTTCTACATGGTGATGCAGGTGCTAGGTGCTATATGCGGCGCTGGTGTGGTGAAGGGTTTCGAGGGGAAAAAG TTTTACGGTCAGCACAACGGTGGTGCCAACTTTGTCGCCCCTGGCTACACCAAAGGTGACGGCCTCGGTGCTGAGATTGT TGGCACCTTCGTTCTTGTCTACACCGTCTTCTCAGCCACGGATGCCAAGCGTTCCGCCAGAGACTCTCACGTTCCAATTT TGGCACCATTGCCAATTGGGTTCGCGGTGTTCTTGGTACACTTGGCAACCATCCCAATCACCGGAACCGGTATCAACCCT GCTCGGAGTCTCGGCGCTTCCATAGTCTTTAACAAAGACCTTGGCTGGGATGACCACTGGATTTTCTGGGTTGGACCTTT CATTGGAGCAGCTCTTGCGGCACTTTACCACCAAGTTGTGATCAGAGCCATTCCTTTCAAATCTAGTTGA
Protein sequence (LotjaGi6g1v0071300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGKEQDVSLGANKFSERQPIGIAAQSQDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNK SDTKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQVLGAICGAGVVKGFEGKK FYGQHNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINP ARSLGASIVFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 2.8E-197 | ||
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 1 | 289 | 289 | 2.8E-197 | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Gene3D | 40 | 288 | 249 | 1.5E-94 | ||
| SUPERFAMILY | 47 | 282 | 236 | 1.44E-65 | ||
| Pfam | 47 | 277 | 231 | 1.9E-82 | ||
| Phobius | 53 | 72 | 20 | - | – | |
| CDD | 55 | 280 | 226 | 7.20831E-80 | ||
| PRINTS | 55 | 74 | 20 | 3.5E-70 | ||
| TMHMM | 56 | 78 | 23 | - | – | |
| TIGRFAM | 59 | 277 | 219 | 1.2E-68 | ||
| Phobius | 73 | 92 | 20 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 93 | 116 | 24 | - | – | |
| PRINTS | 97 | 121 | 25 | 3.5E-70 | ||
| ProSitePatterns | 115 | 123 | 9 | - | ||
| Phobius | 117 | 135 | 19 | - | – | |
| PRINTS | 134 | 153 | 20 | 3.5E-70 | ||
| Phobius | 136 | 156 | 21 | - | – | |
| TMHMM | 136 | 153 | 18 | - | – | |
| Phobius | 157 | 212 | 56 | - | – | |
| TMHMM | 181 | 198 | 18 | - | – | |
| PRINTS | 184 | 202 | 19 | 3.5E-70 | ||
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 213 | 233 | 21 | - | – | |
| PRINTS | 220 | 242 | 23 | 3.5E-70 | ||
| Phobius | 234 | 259 | 26 | - | – | |
| TMHMM | 259 | 281 | 23 | - | – | |
| PRINTS | 260 | 280 | 21 | 3.5E-70 | ||
| Phobius | 260 | 281 | 22 | - | – | |
| Phobius | 282 | 289 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0071300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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