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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0072700 |
| Transcript ID | LotjaGi6g1v0072700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT1G67710.2 response regulator 11; Swiss-Prot: sp|Q5N6V8|ORR26_ORYSJ Two-component response regulator ORR26; TrEMBL-Plants: tr|A0A061E830|A0A061E830_THECC Two-component sensor histidine kinase bacteria, putative isoform 3; Found in the gene: LotjaGi6g1v0072700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13848492..13850532) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTTTAGCAAGACATGCTCTGAACTTGCTTCGTGAAAGGAAGGATGGATACGATATAGTGATCAGTGATGAAAACATA TCTGACATGGATTGGTTGAAACTCCTTGAGCATGTTAGACTCGAGATGGATCTTCCTTTCATTAGTAAGTTTTCTCGCAA TAATATATTTCAAGTTATCATTGTAATCTTTTTAACATTGATTCAAATTCAATGCTCTGACATGTCATTCCCTTCAAAAT GTTGTTTAGTGATGTCTAAGGATGGAGAAACAAGCAAAGTGATGAAAAGCGTCCAACTTGGAGCGTGTGCTTATCTCCAC AAGCCTGTACGAATCAAAGAACTAAAAATTATATGGCAACATGTATTAAGAAAAAGGATAGATGAGGCTAGAGAATTTGA AAGTTTTGAGAGCATTCACTTGATGAAAAATGGATCAGAACAGTCTGATTATGGAGACCTGATTGCTGGAGAAGGTATGA CCTCAACCAAGAAAAGAAAAGTTGCAGATAACAGAGAATTTTCCGATCCATCTACCACAAAGAAAGCTAGATTCGTTTGG TCTGACGATCTTCATTACAAGTTTGCTAAAGCGGTGAATCAGATTGGACTAGATAGTAAGTTTATTATCTCTAAATTGGT ATTTGGATTCATCATTATGTTCTATAAATCTTGGTCCTATGCCTAACCTAAATTTCCTCAATGTATAAGTGTGACTGCAT AGTGACCATCACATGTTTGTTACATAAATCTTTTTCTAACAAATAATTTTTCTTTTGCAGAAGCTGGTCCCAAGAAAATA CTAGATTTGATGAATGTTCCATGGCTGACTAGAGAGAAGATTGCTAGCCACTTGCAGGTAGGTGATGCATAATATTTTTC ATTCTGATTTTTAACAAAAACGAATGATGTTAATAATTCTTATTACATGTGTGATTCTAACTCATGTATATGCACAGATC TTCACATTAATACAATAGGGTGTAAGTAGTTAACTTCCCAACCAATGGTCCTGTACAAATGTCTCTAGGAAATATTACAA TTTAGATGCAAATCTACTTGTAAATTCATTAAAACAAAACCATAGGAATGGAAAGAATATAGATAGGTTTGATTAGTTGA AGTTTGAAACTCAGATTTCTTATGGAAAACTTTTGTTGTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGACG GCGGACAAAAATCTTCCTCAAAAGGTAACCTTACATCGTTTGATTGTGCCATCCCAACACAGTACTCTTGGACTGAAGTT CCAGGAATGCAACTCAGAGAAGAACAGAAGTCAATTGTTCAGTTAGAGGATAGCTTCAACCAGTTGCCGCCATTACTTGG AAAGCAGCACCATATCCAAGTTGATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCGCAATAACTGAGGCAGGGA TTCCTGCTTGTATAGAAACAAAATCTTTGTTTTCTGATTACCAGAGCAGTCACACCAGTTCTGTGAGTTCCGAAGTGAGT GCACTTGACACCTTTCCGATTCAACCTGGAAGCCTTATGATGAGTGATCAACCTTTACAACCAACACCCGCTGCAAATTT AGGCTTGAAAACACAGGGATCTAATCTCAGTTCCATTTCTGATTTAGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTG ATACTCCTGCTTCTTTGGATGAGGACTTATATTCTTACTGGATACAAGGTGGATGCTATAATATGAACTTCGGTCTGCAG AGTACAGCTATGACTGAGTTTTATGATCCAGGGTTTATTACAGAAGTTCTGCCCCTCTTATATGATTCAACTGATTATTC AGGTATAGATCAAATCTATTCATAGCATGATCTCTCTGCTCTTTGCTTCAACTTGAACAAAAATGAAAATTCATGCTAGA GTGGGAAATGTAATGTTACTTCTAGCTAGTTATATCTAGCAGTGAAGAATTTCGATTGCAAGTGTTGGGAATTCTTTTTC CAATCATCAAGGATTTGGACATTGCAGCTTTGTATAGAAGT
CDS sequence (LotjaGi6g1v0072700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGTTGAAACTCCTTGAGCATGTTAGACTCGAGATGGATCTTCCTTTCATTATGATGTCTAAGGATGGAGAAAC AAGCAAAGTGATGAAAAGCGTCCAACTTGGAGCGTGTGCTTATCTCCACAAGCCTGTACGAATCAAAGAACTAAAAATTA TATGGCAACATGTATTAAGAAAAAGGATAGATGAGGCTAGAGAATTTGAAAGTTTTGAGAGCATTCACTTGATGAAAAAT GGATCAGAACAGTCTGATTATGGAGACCTGATTGCTGGAGAAGGTATGACCTCAACCAAGAAAAGAAAAGTTGCAGATAA CAGAGAATTTTCCGATCCATCTACCACAAAGAAAGCTAGATTCGTTTGGTCTGACGATCTTCATTACAAGTTTGCTAAAG CGGTGAATCAGATTGGACTAGATAAAGCTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAG AAGATTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGACGGCGGACAAAAATCTTCCTCAAA AGGTAACCTTACATCGTTTGATTGTGCCATCCCAACACAGTACTCTTGGACTGAAGTTCCAGGAATGCAACTCAGAGAAG AACAGAAGTCAATTGTTCAGTTAGAGGATAGCTTCAACCAGTTGCCGCCATTACTTGGAAAGCAGCACCATATCCAAGTT GATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCGCAATAACTGAGGCAGGGATTCCTGCTTGTATAGAAACAAA ATCTTTGTTTTCTGATTACCAGAGCAGTCACACCAGTTCTGTGAGTTCCGAAGTGAGTGCACTTGACACCTTTCCGATTC AACCTGGAAGCCTTATGATGAGTGATCAACCTTTACAACCAACACCCGCTGCAAATTTAGGCTTGAAAACACAGGGATCT AATCTCAGTTCCATTTCTGATTTAGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTGATACTCCTGCTTCTTTGGATGA GGACTTATATTCTTACTGGATACAAGGTGGATGCTATAATATGAACTTCGGTCTGCAGAGTACAGCTATGACTGAGTTTT ATGATCCAGGGTTTATTACAGAAGTTCTGCCCCTCTTATATGATTCAACTGATTATTCAGGTATAGATCAAATCTATTCA TAG
Protein sequence (LotjaGi6g1v0072700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWLKLLEHVRLEMDLPFIMMSKDGETSKVMKSVQLGACAYLHKPVRIKELKIIWQHVLRKRIDEAREFESFESIHLMKN GSEQSDYGDLIAGEGMTSTKKRKVADNREFSDPSTTKKARFVWSDDLHYKFAKAVNQIGLDKAGPKKILDLMNVPWLTRE KIASHLQKYRLYLSRLQKDGGQKSSSKGNLTSFDCAIPTQYSWTEVPGMQLREEQKSIVQLEDSFNQLPPLLGKQHHIQV DQSQSIASISSTPAITEAGIPACIETKSLFSDYQSSHTSSVSSEVSALDTFPIQPGSLMMSDQPLQPTPAANLGLKTQGS NLSSISDLEFYQRNLLLGGDTPASLDEDLYSYWIQGGCYNMNFGLQSTAMTEFYDPGFITEVLPLLYDSTDYSGIDQIYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 69 | 69 | 2.8E-9 | – | |
| ProSiteProfiles | 1 | 59 | 59 | 17.271 | ||
| CDD | 1 | 59 | 59 | 3.82368E-6 | ||
| SUPERFAMILY | 1 | 66 | 66 | 7.54E-11 | ||
| PANTHER | 1 | 188 | 188 | 4.8E-159 | – | |
| PANTHER | 1 | 188 | 188 | 4.8E-159 | – | |
| Gene3D | 114 | 177 | 64 | 8.9E-28 | – | |
| SUPERFAMILY | 115 | 175 | 61 | 5.91E-17 | ||
| TIGRFAM | 118 | 171 | 54 | 8.3E-21 | ||
| Pfam | 123 | 170 | 48 | 1.6E-5 | ||
| PANTHER | 185 | 386 | 202 | 4.8E-159 | – | |
| PANTHER | 185 | 386 | 202 | 4.8E-159 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0072700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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