Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0074700.1

Overview

Field Value
Gene ID LotjaGi6g1v0074700
Transcript ID LotjaGi6g1v0074700.1
Lotus japonicus genome version Gifu v1.2
Description Elongator complex protein 4; TAIR: AT3G11220.1 Paxneb protein-like protein; Swiss-Prot: sp|Q9C778|ELP4_ARATH Elongator complex protein 4; TrEMBL-Plants: tr|I1LXN7|I1LXN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0074700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:14182064..14187588) extracted from Lotus japonicus Gifu genome v1.2.

CCCTGATATTTTATATTTGCACCCAGACCCACTTACTCCTCTTTCACACACTCACATACTCTGATACTCACGGCTCACCC TCTCTGATTCACGCTCACCACTACCAGTCATCATGCCCAGACGCCCTCACCCTCTCGCACCCTCATCACGGCACGGCGGC ACCACCACCAGCCACCACCACGCCACCACCAGTCCAGTTCTCCTTTCTCTTCAAACCTCGCCGCGCCTCGCCTTGCCTGC CCTTCGAAATTCGAATGCAGGTATTTTGTTTTGTTCCTTCTTGAGTTCTTGTAGATGCGTGATTGTCTGATTGTCAATTG AGATACGTTGTTGTTGTTGTGTTAGTTTGTCAATTTGTTTATCTTTGGGAATCAATTTGTTCTTCAGAGAATTCACCTGT TCAATTTGTTTATCCTAGTTTCTTGTTTTCAAGATTTTCCCCTTCCCATGGATATTGAGTAACTGTTACGGTTTGTCTGA GGTTTTTGGGGGCAACATTTTTTTTGCAATTATTTGCTGTGTGGCTATTGGAAAACTGTTAATGATGTATTTAGAATGGA GTGCTATTTGGAACATGAGTATTGTGATATCAGTGTTGGATGGTGTATATGGTATTGGAGCATTCAGAGTTTCATACTTC TTCAGCAGAGGTAATCAGAAGACAGGGCTTCTTTTGATGCATGTTTTCTTTATTTTTGGATTTTGTTTAAGGTTAATAAG TCTGTCAAAGGAGTAGTAAGATAAGGTATGAATGGATGCAGCGTGTTTAAATGCTGGGAGGCTCTGTCATCTAAATTTCA ATTGGCATGGTGCGGACTAGAAGTGCATCTTGAATTCATGAAGCTTTGTTATACATTGTTGGGATTCATTAGTGATATTC GGGACATGGTCTTGACAGCAATATGATATGTGGCTTTTAATTGTGAGGATCTATGTGAGAAGAAGGTTGATAGTTTTGCA GGGTTCATTCTTGGGCATTTGGCAGAGTTGCGTTAGCTTAATTGGTTGGTGAATTTCCATGGCTGGAATTGCTGGTGTTA GGAATTAGCTTTGGCATTTGAAGATGGTATAGACTATAGTGCTCCTTGGAGGTATCTCTTTGGCTTAAGTAATTTAGTAC TCTTTTTAGTGGTGTATAATAAATCTTTCCTTCTATTATGGTCTATTGTAGTGGGATTAATAAATTTAATTTCACTTTTG CTGACCAAAAAAAAGTGTGCATGTAGTCTTCTTTTAATTATATTTTTATCGATTTGCTAATTTGAAAATTTTGAACCCCC TGACCCCAGGGTCCTGGATCCGCCACTGCACTGAGTAACTATTTTTTTTTCAATTTTTGAACATTACTCTCTGTGTATCC TTAAGTCAAAAGCATGCTTGACATGAATAATTGATAATCTTGGAGGCTGAGTAGTAATTCACTGTTCATGATTTATATTG TTAAGTAATGGTTACCTTTCACACAATTGAGAATTTATAGTGTTTGTTAAGCCAATATGTTATATTATGTATGAGTCACT GGTACAAGTTTTGAGTAGTAGTAATAGGCAATTTAAGTTGGAACCTTAATGCTAAATTGTTCTAATTAACCTAAGTTTTA CCTCAGGGATCATAGTGGGCATATTTTAAAGTGTAGAGTTGATGCAGAATGGCTGCAACCAGGCCTCGAGCAAGTAGTTT TTCTCGCAATGTGTCAACTGTAACGTCTTAGAATCCGGGGCTCAAGCATGGCCCTAACGGGACGATGTTCATCTCATCTG GGATTCCGGATCTTGACAGTAATCATCATCTCTTTGACTTCCTTTAAATTGAGCCTTATAGTAAATGGATGAATCAAATA ATTCTGTTTGATTCGTGTCTTTTCATGGAAGATTCTTATGCTTTGTTTTTTTTTTTAAATAGAGATTTTAGGTGGTGGTT TTTCTCTCGGTAGCCTTGTCATGATTATGGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCT CAAGGACTTGTACACAGACAGCCGCTCTTGTATGCTAGTGCATCTAGATACCCTAAAGGATTTCTCGGCACTTTGCCTAG CCCAGGGACATCGAAAGATCTTGGCCATGTAATTTTTTTTACTGCTACACTCTGTGATGTGTGTTAATTACTTTTAATTT GTTGTGGTAATGTAATTTTTTTTATCATGCTTTTGATTTCAGGAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTA CTTTGGTGAGCCTCAGCTAAATGTCAACTCTAATAATGGTAAGCCTGTCCATAATCATCTCCTTGTTCTTAGTCTTTTAA TAGTCATTTAATTGTTATTACTTCATATATGGTATTATTTTTCTTGTCTCGACTCGACTATGAAATACATGTCTATCTTG TAGTTATTTTAACTAGGTCATGAGAAGCAACCTTTCACTCAAAGGAAATTGAGTGTCTAGAAAAAGAGGCACTATATTGT TATACCATGTATGACATCATTTCAAAATTCAAATTAATACACTTATGAGTATAACTATGTAAGTATTCCAAGTTTTGACT CAATTTAAGTTCTAAGATTTAAAGTTTTATATCCCAAACTTTGTATAGATATCATATCCCATGAAGTTTACAATAGCAAG ATAAAAATATCAACAGGCCAACCAAAGCTAATAGTAACACTAGTTTCCTATTTTGTTATTGTCCTTCTGCCCCAGTTTGC TGTAATTGTAGCCTCTCGATCATGCCTAATTTAATTCTAGAGGAGTGTTCCCTTTTCCTTTATGATTATATATTAAGAAC AACAGGGCTGATCGTTGATTGAACTTGTGTAAAATCACTGCCTGCTAGGGACTCATAATGGGTCCGTAAACCTTGCATAC ATAGAAGAAACTTTATAGCATTTGCGTGTCCCTTTTAGTTTATTTTATGAATATGATAAAATATATTTGCAGTACTTATA AAGAACCACATTATCATTCTAAAAATATTTGTATACATTTCTGATCAATCTTTATGAAGTCCCATTGAATGTGAACAATT GACATATTTATGAATATGCCAACTTATATTGTGTAAGCTTTTGAGTCGAATCATACTATGTGCAGGTGGTCAGCACGATT ACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGGCATTTTTTTGGTGGCATGAATGTAGATTGTGTTAGCTTCCAA GATTCTCCAAACCGTGCTACTCTTCAAGATCGTTGTGCTGGATTTCTCGCTCAATGCTCAAGGTGCAGCGATCTATAGCA CTATTTTGAGATATGTTGTTTAGAGATATAGGGTGGTTCTCAGATCTCCACCTAATAGCCAAAGATTTCAGGAGGATAGG TTCTTGACACTATTCAACTATTTAATCATGTTGCCACCCCTGGTTCTAAGTCAGCTTTTCAAGAACAGAATAAAATAAAA TAAGATTAACTGTAAAAAGTTTACCATTGGTGGTCTTATATCTACCAGAGACAATCTAAAATAAAAAGTTTACCCTCGTT AGCACTTCATTATCATAACTATCAATGGTTCTTGATGGTCTAATATCTAGCTGTCGGGTAGACTTTGTCCTTTGATATTG ATGTGCACTTTGTGATCACAATTACTAATACAACATAGGGTTTATATATATGGGCAGAAGTCTTCGCTAGTTTTGAAAGT GCATACAATTGTTACAGTGGATCTTCAAAAATAGCTTTCAATATACTTATCAGAAACTCCCTTTGATATCATTCTCTTGA ATGCTGGTGTATAAAGGATAACTAGGATTGCAGTTTTGGTAGTTTTGTGCTTCATTCACTGTTGATTATGGACCTTTCTC ATGTACTAGATTCATGGCACATGATCAAAAATATATAAGTAAATAGAGACGGAGTACCTTTTTCTAGCTTACCCTTTCCA AATTGCTTATAAATTTCTTGGTCTATTTCAATTTGGTTGTGATAAAGTCTACTTTGGTGATATTGTTTAAAATTTATCTA TAAAAATAGCTTGCTTTCTTTTCAATTTTTCATTCACTGATGGATCACATCTGCAGAAATGAAGGCGACACTTTCTCTGC TGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAGTGTAAATATGCAAACAATGTGAGTTAATATTCATTTTCCTTTG TGCTTTTCATATTGTTTGAACTGTGTTTCTTTGTTTTTGAACTGTATGTTCTTTTTTAAATGATTTCATATACCCTTACC TCTTTAGGAATTATATCTGATGGAAGATTCTTCATGTGATCCTTCTTGCATCTCAGCTGTTGATAACTGTTCTTCATTCA TTAATGTTGGATTTTTTCTAATGTGAAATAAGTTGGTATAGCTTGGTTATTGCAGGAGTGGCATATTCTTTCCTTTATTA GGTCACTAAGAGGCATGACCCGTTCTTCAAATATTGTTGTTGTTGTAACATTTCCACCTTCACTTCTATCTCCATCTTGT TCAAAAAGATTGCAGCATATGGCGGACGCCTTGCTATCTGTCAAAGCAATTCCAGGTTCATAATCAACTTTTGTATTTTA TGGGCTTATTATTTAACAACTAGCTCAAATTTCACCACTAGAATTTTTGTTTCAGATGAGGACAAGGAACTGGCGAAACT CCTCACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTGCATAAAGTTGCACGGTTAAATACACAGGTTATAATCACGC TTCATTTTGATTTTATTTAGTCCTTTTATGTACACGTGCTACTAGGAGTTCACAATGTGACTTGTTTGCAACTGTTAACA CTTTACATCCATTTATCCCATTATATATGTTTCTCTATCCTTTTATCTATCTCTCTCTCTCTCTCTCACTTACACACTAT ATACTTTTAATATTACTTTGCCTGAGTTATTAATTTATATCATAATTGATTTTGATGTTGGTGCATCTCATATTTCACAT CTACATTTTTGTAAAGACAAGCAAATTGGAAAATTTTATTGATGAACAGTGGATTTCTTGAAGCTTTGATCTATCTGAAC AAGCTTATGTTGTTGAGTGTCTGATTTTCAACTTGCAGGTTCCTGTGATTCTTGAGGCCACAACACTCTCAATAAAGTTA CAGAGAAGCCCCGGTTGACGGTTCAAGCGGGAGTTCGTATGGCACATCGGGTGGCTGTTCTGGGTCAACTAAAGCTGGGT CACTTGATTTTTAGATTATACCTTGTTTATCACTTAAAATTGCACCACCATATAAACCCAGCAATAGTCTTAGCTCGTGA AATGTATTCTTTTACTAGCATTTTTGTTGTTCCTTTCTCTTTGTTCTTTTGATAATCAACATGTTTTACCATTGATTCAT CTCCAATGTATAGATACGTTCTTTAAAAGAGAGCATATATGAAGCACTGATTCTTACACGACACTACACTAACACCCAGA AATGGCAAATCTTTAAAAACTAGAACATTAGGACACCGCTTCGGACAAGTTATCTCTTTACAAAGAAAAGATAAAAACAA TTTCC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0074700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCATCTCATCTGGGATTCCGGATCTTGACAAGATTTTAGGTGGTGGTTTTTCTCTCGGTAGCCTTGTCATGATTAT GGAAGATGCTGAGGCACCGCATCATATGCTTCTATTGAGAAATTTTATGTCTCAAGGACTTGTACACAGACAGCCGCTCT TGTATGCTAGTGCATCTAGATACCCTAAAGGATTTCTCGGCACTTTGCCTAGCCCAGGGACATCGAAAGATCTTGGCCAT GAAAAGGATCTGAGAATTGCTTGGCAGTACAAGAAGTACTTTGGTGAGCCTCAGCTAAATGTCAACTCTAATAATGGTGG TCAGCACGATTACTGCAATGATTTTGACTTGCGAAAGCCCTTGGATAGGCATTTTTTTGGTGGCATGAATGTAGATTGTG TTAGCTTCCAAGATTCTCCAAACCGTGCTACTCTTCAAGATCGTTGTGCTGGATTTCTCGCTCAATGCTCAAGAAATGAA GGCGACACTTTCTCTGCTGGTCGTATTGCAATTCAATCATTCTGTTCTCCACAGTGTAAATATGCAAACAATGAGTGGCA TATTCTTTCCTTTATTAGGTCACTAAGAGGCATGACCCGTTCTTCAAATATTGTTGTTGTTGTAACATTTCCACCTTCAC TTCTATCTCCATCTTGTTCAAAAAGATTGCAGCATATGGCGGACGCCTTGCTATCTGTCAAAGCAATTCCAGATGAGGAC AAGGAACTGGCGAAACTCCTCACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTGCATAAAGTTGCACGGTTAAATAC ACAGGTTCCTGTGATTCTTGAGGCCACAACACTCTCAATAAAGTTACAGAGAAGCCCCGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0074700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMSQGLVHRQPLLYASASRYPKGFLGTLPSPGTSKDLGH EKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNVDCVSFQDSPNRATLQDRCAGFLAQCSRNE GDTFSAGRIAIQSFCSPQCKYANNEWHILSFIRSLRGMTRSSNIVVVVTFPPSLLSPSCSKRLQHMADALLSVKAIPDED KELAKLLTGYQDMVGFLNVHKVARLNTQVPVILEATTLSIKLQRSPG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
1 286 286 4.5E-60 –
PANTHER
PTHR12896
1 284 284 3.3E-96
IPR008728
Pfam
PF05625
2 285 284 4.7E-69
IPR008728
SUPERFAMILY
SSF52540
3 239 237 2.44E-6
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0033588
Cellular component Elongator holoenzyme complex A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0074700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…