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LotjaGi6g1v0076500.1

Overview

Field Value
Gene ID LotjaGi6g1v0076500
Transcript ID LotjaGi6g1v0076500.1
Lotus japonicus genome version Gifu v1.2
Description CRS1/YhbY (CRM) domain protein; TAIR: AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A1J7I103|A0A1J7I103_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0076500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:14512304..14520941) extracted from Lotus japonicus Gifu genome v1.2.

TGGGGCCTTACAAAGCTATCATCAATTTTGACCGGTCAATAATCCATTTTTCTCCCTCCTTTTCTTGTTTTTTCTCTTTT TTCCCTTGTACTTTTCTTTTCTCTCACTTTCTTCCCTAACCAAACATACTCGTTGTAATTGGCAGAAGCCAATGTGCAAC TGTGCAAATTGCAGCAAGCTACCGCCACTGCAATCAACCTTAGAGCCTTCCTGGAACCGCGAACCACCGTCGAGGCTCTC CACAGTCCGCTCCCGTTCACCTCCGTGAACCACACTCGAGGAGTCTCTGTCAGTCATCCTCTGTGCCAAGGTTCACCGCA ATTTCGTGATGGATTCCGGCCACCATGTTGGGTTGGGTTGGCCATATAGCCGCCGCAGCTGAGTATGAAAGACAGGCCTT GTCATGAGATATCTCTTTCCGCCGTTGGTTCTTCGTCGCCGTCTTTCGTGGGAGGAAGCGGTCAGGGCATCTGTGAGGGA AGAATAAGGCTCCCTATTGGAATTTGGAACCTGATTAGTTGTAGGAACTTTGTTATTGGTAGCCTCACCACATTGGTAAA ACCCTCTTCCTGTTCATCTTTGTTATTATCTCATGCCTTGGATGAATGGTGATTGTGTCTTTAGGTCATAACATTTGAGT ATTAATGATGATAAATCTTTGAGAAGTGTTTAGTCTTCATCATCTATTGTTGTTCATTAGCAATTATTTTCATTTCATTG TATATGCAGCAGATAGCAGAGTTTTTGGGGTTGGTTCATATTTTGATAGGTAGACTTAGTACAATTAGGTTGGTAACAGA ATATTAGTTAGTTAGTTAGTTAGTTAGCGGTTTAGTGATCTAGTTCAGGGTCTTTGGCATTGGGAGGCTTGGAAGATCCT CGAAATTCTGCTGTTGTGTTTTGTAATCAAGAGGGATTTCCCTATTTTCAGCTAGTTCCTATCATATCCATACTTTGATT TGCTTAGTGTTGAATAGTTGGCATGCGTTCCTAGTAGAAGCTGAAACATGATAACTAGTTTATTTTCCTATTCTAAGTCT GGTAATTGAATGTAAACTATTCCTGTTCCCTTGTACAGAAGAAAGGTCACAATCATGGTGCAACGACAGAGACATATTTT CCCAATTCTTCGGCACATTCATAAGGGAGTGGACCATGTCTATCGTTCAGCTCCAAACCTTTTCATTTCTTGCATAGGCT CTTCTTTTTCACAAGGTTTAAGAGTTCTCTTGTTCATTTTCTGGTTTTCCGGTCAAAAAATTTGTAGGGATCATTACTAA AAACCTTTCTTTGGTATTGTAGATCAGTTACAGGGGGCGTCGACAACAACGTTGGCCATTTCCTCAAGCCCTATTTATCG TTGTTACCAACATCTGGTAATTGTGTTTTTATTGCACCATCATCAGTAATGTATTGGTTTTGGGGTTTTGGGGTTTTCAT TTAATGGGGAGGGAGGAGATCTCATGCATACCAAAAGAGATTTTGGGTTACCATGTGTGCTATGATGTACCTAGTAATAG TAACCAAACTTAACCAACGTGCACAAATTAAACACAATAATTGTCGCTTGTGGATTGAGTGGAATTCTCATTGAAATGAA TACCAAAATGCCTTTTTGTTACTAGTTGACAGATATTCCCATTTGTTTAAACTGAAAAAGTAATTTTACTATTGTGTTTG GTCATAATTTAAGATGCACCGACAACTCTGAACAATTGTCCGGAAGTCGAACAAGACTGACACTGGTTCGACACTTGTGC AACACTATTTTGTAGTGTTTATAGTTTAGAAGCACGGGCCTTTTTGCACTGTCTGAATTAAAATAAAAAATAATTCTCGG ACACTCCTTTGAGCTCTGAAACTTCTCAAGGGATTGAACCCCACACCTCTTCTTGTCTAGACACCTCTAGGACACTGATT TCATAATTTTTTTTTCGAAGACAACATATTTATAAGTTATGGGTTTTAAATTTGAAAAATCATTTAAAAATAGAACCTGT AAAATATCTTTTCAAATCTCTTATGTTGTATTAAAGAATATGAATCAACTATTCATGTTTTTTTTTGTAAAGAGAAATAA TATACCTTTTAGTATTTTTTAGGCTCATTTTCATAAGAAAATTGCTCTTAACCTGTCTTGATTTTGGGAAGGTGATATAT ATATATATATATATATATATATATATGGTGTCCTATTTTCTGGTTATTAGTCGTGTCTGGTGTCCGTGTCGGAGTGCTTC ATAGGAGATGACAAGCTTCTAAATTTAGCTGAACTCTTTTAGACTAGTTTTAATATAGCAATGTATTACCAATTTGGTTT TAGTTAGTTTAGAAGGCAAAAATCATTAACTGGCTGGACTTCTACTGAATATTTTAGTTTATTGATGATCTTTTTGAAAA TCTTTTTTTTTGTGTTAACTTGTAATCTCTTGTGTGAAGCAAAAGATTTTCAGTAGTTTTGTTGAATATTGACTAACACT GCTGTAACTTGAATTATACTGTATGCAAGGTTTGTGGCCAGGCCCAGGAACCTACTTTTGGTCATCGCCATGATTTAAAA CCGTCTGCTTTCATAGGGCACCTTAGCTTCCATTCGGGTCCATTTCTAAAGTGTAATGATAAGATGGTAGAGCAACTTCA GGATTCTGAAAAATCACCAAGTGATAGTTGTGCTGATAATGCCAAAGTACAGAGGAAAAAACTGAAGGGCAAACGAGCTG TTGTGAGATGGCTAAAGTTCTTCAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAACTTTTATAT AAATTGTTAAAGGTAAGTTAATTTTCTATTTTGTCCCTTTTTTTATAATTTGCAAAGATCTACCATTGCTATTGTTTTTG AATTGGAATAGTGTTATTTGCTGATTCTTTCCTATTTCCCCATTGTCACCCTTTGCTAGCTATATCTAGATACATTTCCT TTTCTGATTAGTATTTTACATGCTACACATGGCTTACATTTAGGTTTTAGAATGAAAAGCTAGGATTCTCACACCTTTGG TTGGTCTTTGTAGCAAATAGATGTCAATAATGATTTTCTGAATGGCTTTTTAGAGGAGGAAGTTTATATGTCTCAGCCAC CTGGTTTTGAGCAACAAGTCTGTGGTCTGCAAGTTGATCAAGGCACTCTATGGCATGAAACAGGCTCCTCAGGCCTGGTT TGAAAAGCATTGGTCTACATTACTTTAGTCTGGCTTTATGGCAAGCCACCATGATTCATCATTAATCATCTACTTTATCA TTTCAGTTCTCCTTTTCATCCTTGTATATGTTGATGACATCATTTTCACGAGCAATTCCTCTTCACTGGCTCAACGGATT ATTGAACGCCTCAACATTGTGTCTTTGCCCTCAAACAGCTAAGCACTCTAGACTATGTTCCTAGGATTGCGGTAAAACAC CTCCCAAATGGTTCACTTCTCTTAACTCAAAGCAAGTATATTCTGGATCTTCTGTCAGAAGCTAATATGGCTGATTACAA GCCAATTTCCTCCCCTATGGTCACCATCCACAAGCTCACGGATCCTGAAAGCTCTCCATTTTATGACCCTTTTTTTGTCT AGATCTACTGTTAGAACCCTCCAATATCTCACCATTTCTAGACATGAGCTTGGCTACTCGGTTAACAAGGTCAGCCAATT TATGAGCAATCCCATTAAAACTCACCGAACTGCATTAAGCAAATTTTCGGGTGTCTCAAGGGTACCATGACTATTGGTCT CTTACTGTGTCCAGCTTCCTCATTTCTCACTTCCGCTCATATCCGTGGTTTCTGTAATGCTGATTGGGCCTCTGACCTGG ATGATAGAAAACTGAGCCATTTGAACGGCCTGATCAAATCTTAACTAGAAATGGACAAAGTTTATCAATTAACTCTAGTG GTTCCACATCCTCTCCCCTCTTATTCTCAAACATTTCATTCATGTTCCCACTGTTACCAAAAATCTCATGAGTGTTAGCA AATTTGGTCAAAGATAACAATGTATTTTTTTATTTTATCCTTTCTTTTGTGGTATTAAATCACAGGGTTCAAACCAAGTC TCCTCCATGACACTATTGGCAAAGATGGCCTTTATCAATTAACAGACATGCTTATTTTCTCGTCTCAGCATCCATGTACT GATTCTGTACAATTTCCTTTTGTAAATTAAGTTTCTGCTTCTGCTAGTTCTTCCTATATTATGTGGCATCAAAGGTTGGG ACATCCCAATGCCACTACATTACAGCATGTACTCAATCTTTTTAATATTCATTTTCCTGAGAAAAGTACATTTGACTTGT GCACAACTTGTTGTCTTGGCAAAGCCCATTGATTGCACTCCCAATTATCCACTACTATTTATACTTCGCTATTCGAATTA ATTTTTTGTCACTTGTGGAGGCATGTTCCCTTTGCTAAGTCAGAAGCATTTTATTGTTTTCAAACAGTTCAAAACGATGG TAGAGCTGTAATTGGGGGCGGGGGCGCGGGGGGGGGGGGGGGGGGGGTGGGAATTTAAACATTTCAACAAATTTCTCACT GAAAATGGCATCACCCGTACGCTCATATGCCCTCTCACCCACCATCAAAATGGTGTTGTGGAAAGAAAATATCGCCTCAT CGTTGAATTAGGGCTCACTCTTCTTGCCCAAACATCTCTCCCTTACAAATTTCCAGATCATGCATTCACCACTGCCATCT ATCTCATTAACAGACTCCCTACTAATTCCCTATAGTCTGCTGTCCCACATTTTAAGCTGTTTTCCACCTCCCTGATTATG ATTTCCTCAAGTCTTTGGATGCTCTTGTTTTCCCTATACCTTAGTACATCAAGGATCTTTTAGCTAAAGCCAACATGTTT GATTGCATGCCTATTTGTTCCTCAATGATCACCAGACCGAGACTTGTTAAACATGCAAGCTTTGCTTTTCATGATCCCTA CCTGCCTGTATTGCTCCAAAGTAGGTGCTCTTCCGTACCTAACCATCTCCAATCCTGAGATGAACTTCTAAGTTAACAAA GTTAGTCAATTTATGAAAAGCCCTCTTAACAGACATTGGACTGCTGTGAAGAGGATTCTTCGGGACCTCAAGGGAAGCAT CACGTCTGACCTGCAAATCAAGAGGATTTTTGCGACACTGACTGGGCCATAGATCCAGATGACAGGTGCTCTACCTCAAG TGCATGTGTTTTTCATGGGCCTAATCTCATTTCCTGGTGGTCCGTCAAGCAAGAAGTCATTGCCTGCTACAGCACTGAGG TAGACTGTATTATTCTTGCCCATATTTCAGCTGATATCCTTTGGACTCAATCCCTTCTTCAGGATGTGCAAGTTGCCACT CTTCTACCTCCATTTTTTGTTATAACCCGAGTGTTGTATCTCTGGATCACAATCCGGTGCTCCTTACCCGCGCCAAGCAC ATGGACCTATACCTTTTCTTTGTTTGAGAGAAGGTCCTCCACAAGTAGCTTGTTGTCTTACCAACAGTTCTTCCAGCTTG CAGGATAGCGTGAGATGAGAGTACAAAATATTTTCTAAATCTTTATTACTTGTCACTGATATTCATGGAAAGGTATCTTC TTCCTGCAAGAACATGTGTAATGATTAATTGTTTTCTTCTAAATGTTCCGTGAGACTTCCTTTGTCTTGGTAGAACATTA GTAAGATTTTTCTTGTTTTTAATGAAGGTCAATCCTAGTATTTCTGTGTTAGATTAGAATTTAAAAAGATATCTTATAAT ATCTTGATCATATCTTAGAGCAATTGAGATTATTCTTTAAGTTTGGTTTCTTTATTTTCTTATTTATAATTGGGATTCGG AATCTTAATTAGTTTCTGTATTTTACTAAGAATTAGGAGTATACTATCATTATAAATCAGGCTAAGTACTTTATCTTTTA TGAGATGAAACTCAATATGTTATTACAATTTTATTCTTTGTATTCATTTTTAGGCTTTGAATACCCTAAAGACAATCCCT GTAATTTCATCACGGTATACAAGTTGTTCTGCAATTAATTATTGTTAGAATCATCATAGAGGAACTTATTTTGATTTTGT ATGTCAAAACTTTATTGGATCTCTGATATAATTATGTAATTTCCAATGAAGGAATCTAAAAAGTTTAGAATTCTACAATC TTAGAAGTTTGTATAGATCAGCAGTACTTTACTTGTTCACTTGGCTTGTTTTCTATAAAAAGTGCCCATAGAGTCCTGGT TGTCTGGGAATCATGATATTCATTTTTGCTCGTGCTATTCAATGAAAATTTGCCTTTACTAAATTCAGCTCCATCGTTTT TTGGCCTTTTATCTGCACTAAATGGTATGTTTGATGTCCTCGGATGGCATGGTATTGAATGAATTATTTTGTTCCCATTT TTGGCAGTGACAGAGCTCTTGCATTCTCAATTACATTTATTGTTTTGAATCAAAACATATATTCTTCTGGTTTACTGGTT TGTATTTTATGTCTACCGCATTGGTTAATAAAGACACAATACAATTCTTTCTCAACCATTCTAGGCTCGGAAGAAAGAAG AGAGACTTTGTGAAGCTCTGAAGAAGATTGAGCCTACAGAAACATCAGAAATAACCCATGATCCTGAGATTCTGACACCA GAAGAGCACTTTTTCTTCTTAAAGATGGGCCTCAAATGCAAAAATTATGTGCCAGTTGGAAGGCGAGGAATTTACCAAGG TGTAATTTTAAACATGCATCTACATTGGAAGAAACATCAGACTTTGAAAGTGATTATAAAGACATTTTCATCGGAGGAGG TTAAGGAGATTGCCACGGAGCTGGCGAGATTGACTGGAGGTATAGTGCTTGACATTCATGAAGAAAACACAATAATAATG TACAGAGGGAAAAATTATTCTCAGCCACCAACAGAGATAATGTCTCCACGAATCACTCTTCCACGAAAGAAGGTACTGTG TTTGTGTTCAATTTTTAATCACTTATAATTATAAATATAGAATACATCTAAAGTTTATCCGGATGAGGGGTTTCTAAATA TCTTCCTACAGTTATTGGTTTTCACTGTCCAGGATTAAGCCATTTTGGTAAAATTAAGTGGCTAGAGATTAATGCCATTG ATATTTTCCTTCATTAATGACAGATTCTAAATTGAAGCGGAGAAAAATGTTAAATCTGACTCCCACAATAGATGCTTTTT TAATGTGCCTCGCCTGAAAAAAGCCTTTCGTTTAAGTGGGTTTTTGGAGATATATACTACATAGAACCTGTTTGGATGCA AACCAAAGAGCACTTATCAGTGCTTATCTAGTGTTTTTTCTAGTAGATAAGCTCCAATAAGTCCGTATCCAAACAGGCTC ATAGTAAAACACTTGTGGAGGCTGCATTCAGCCTTCACATCTGCTTCCTTTTTTTTCTTCTTTGGGTAATATGAAAACCT TGTTTTATCAGTTTTTTCCAAAGGGAGTTGCTTCTCCTTCAATTTGTTTCCACACAAAGCTTTACTTGTAGAAGCAGAAC CACTACAATGTTTGAATTCTGGCATTTATTGTCTATGCATGTGTATATGTAATCTCTTCTGTTCATGCTACTTGTCTTTT TCTAAAAAATTGATATGTTTCCTTTTCCAATTTTATACCCTTGCATTTATTTATTTAGAAGCCCTATAATGCCTTGTTGA TGCTGGTTCTGACTCAATTTATGCAGGCTTTGGATAAATCAATTTATAGGGATGGTCTCCGAGCTGTGAGAAGATATATT CCTAGACTTGAGCAAGAGCTCGAAATTCTTCGGGCACAAATTCAAAGCACTGGTGAAAGTACAACAGAGGCTGCTGAGGG AATCCAAAAAATTGACGGAGCGAGTGTTGAATCTGGTGGTATTTCAAATTTAGAACCACAGAATTCAGATAAGCTTCGTG AGCTGATAAATGGTAACATGGGGTGCCCGGAGGATGAGACAGATATTGAGTCTGGATTGGATTCTTGTTCTGACACTGAT AAATTATCAGATATCTTTGAGACAGATTCAGATGTAGACGATTTGGTGAAGGAGGAGAAACCTCTTTATTTGGATGAGTT TGACAATTTTCCAGAGCAAAGTGATGGAGAATCAGATGATTTTGAGGAGCATCTACGGCAAGTGTCCAACTCAGAAAACA TGAAAAAAGATGTTGACTCACCTAAGTTTGATGAAGTTGACAGGATTTTTCTGCGTGCTGCGTCCTTTTTAAAGAAAAAG AGATAATAAGAAATGGACAACTGTAATTATCGTACTGGATTTATATTTTTTTGGAGAGGGGGGGCTTTCGGACAAGAGGA AAATTGAGTTTTGTTTTAGCACAAGAGAAATTACATTATGATTTTACATGTTTCTGAAAACTAATTTTCAGGATGCAAAA ATTTACATTATGAATCTGGTGTAGTCATTCTACGGTGAGTGCCCATAGGTGCTAACTTGCAAAATTTGCCAAATGCTCAT TTTTTTAGACATTTTTCCACATTTTCCTTCCTATTTGCCATGAGTTTTTGTGAAGAAAATGCAACTATCAAGAACAATTT ATAGCCAGAAAACATAAGAAAAGTATACAAAATAGAGGCTTATCAATTTCCCCAACTTAGGTTCAGTTTTTCCTTAAG 

CDS sequence (LotjaGi6g1v0076500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGCAACGACAGAGACATATTTTCCCAATTCTTCGGCACATTCATAAGGGAGTGGACCATGTCTATCGTTCAGCTCC AAACCTTTTCATTTCTTGCATAGGCTCTTCTTTTTCACAAGATCAGTTACAGGGGGCGTCGACAACAACGTTGGCCATTT CCTCAAGCCCTATTTATCGTTGTTACCAACATCTGGTTTGTGGCCAGGCCCAGGAACCTACTTTTGGTCATCGCCATGAT TTAAAACCGTCTGCTTTCATAGGGCACCTTAGCTTCCATTCGGGTCCATTTCTAAAGTGTAATGATAAGATGGTAGAGCA ACTTCAGGATTCTGAAAAATCACCAAGTGATAGTTGTGCTGATAATGCCAAAGTACAGAGGAAAAAACTGAAGGGCAAAC GAGCTGTTGTGAGATGGCTAAAGTTCTTCAGATTTAAGAAGAAGAAAGAGTATGAAAGGATGACAGCAGAGGAAAAACTT TTATATAAATTGTTAAAGGCTCGGAAGAAAGAAGAGAGACTTTGTGAAGCTCTGAAGAAGATTGAGCCTACAGAAACATC AGAAATAACCCATGATCCTGAGATTCTGACACCAGAAGAGCACTTTTTCTTCTTAAAGATGGGCCTCAAATGCAAAAATT ATGTGCCAGTTGGAAGGCGAGGAATTTACCAAGGTGTAATTTTAAACATGCATCTACATTGGAAGAAACATCAGACTTTG AAAGTGATTATAAAGACATTTTCATCGGAGGAGGTTAAGGAGATTGCCACGGAGCTGGCGAGATTGACTGGAGGTATAGT GCTTGACATTCATGAAGAAAACACAATAATAATGTACAGAGGGAAAAATTATTCTCAGCCACCAACAGAGATAATGTCTC CACGAATCACTCTTCCACGAAAGAAGGCTTTGGATAAATCAATTTATAGGGATGGTCTCCGAGCTGTGAGAAGATATATT CCTAGACTTGAGCAAGAGCTCGAAATTCTTCGGGCACAAATTCAAAGCACTGGTGAAAGTACAACAGAGGCTGCTGAGGG AATCCAAAAAATTGACGGAGCGAGTGTTGAATCTGGTGGTATTTCAAATTTAGAACCACAGAATTCAGATAAGCTTCGTG AGCTGATAAATGGTAACATGGGGTGCCCGGAGGATGAGACAGATATTGAGTCTGGATTGGATTCTTGTTCTGACACTGAT AAATTATCAGATATCTTTGAGACAGATTCAGATGTAGACGATTTGGTGAAGGAGGAGAAACCTCTTTATTTGGATGAGTT TGACAATTTTCCAGAGCAAAGTGATGGAGAATCAGATGATTTTGAGGAGCATCTACGGCAAGTGTCCAACTCAGAAAACA TGAAAAAAGATGTTGACTCACCTAAGTTTGATGAAGTTGACAGGATTTTTCTGCGTGCTGCGTCCTTTTTAAAGAAAAAG AGATAA 

Protein sequence (LotjaGi6g1v0076500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVQRQRHIFPILRHIHKGVDHVYRSAPNLFISCIGSSFSQDQLQGASTTTLAISSSPIYRCYQHLVCGQAQEPTFGHRHD LKPSAFIGHLSFHSGPFLKCNDKMVEQLQDSEKSPSDSCADNAKVQRKKLKGKRAVVRWLKFFRFKKKKEYERMTAEEKL LYKLLKARKKEERLCEALKKIEPTETSEITHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL KVIIKTFSSEEVKEIATELARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLPRKKALDKSIYRDGLRAVRRYI PRLEQELEILRAQIQSTGESTTEAAEGIQKIDGASVESGGISNLEPQNSDKLRELINGNMGCPEDETDIESGLDSCSDTD KLSDIFETDSDVDDLVKEEKPLYLDEFDNFPEQSDGESDDFEEHLRQVSNSENMKKDVDSPKFDEVDRIFLRAASFLKKK R 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 61 481 421 3.2E-208
PANTHER 61 481 421 3.2E-208
ProSiteProfiles 194 291 98 18.258
SUPERFAMILY 195 287 93 2.62E-21
SMART 196 280 85 1.4E-21
Pfam 196 280 85 8.1E-15
Gene3D 196 295 100 1.2E-5
Coils 313 340 28 -
MobiDBLite 427 459 33 -
MobiDBLite 439 459 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0076500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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