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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0076800 |
| Transcript ID | LotjaGi6g1v0076800.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14563453..14566514) extracted from Lotus japonicus Gifu genome v1.2.
GCATAGGCATAGCCCATTTCATTTTTTCTAAGGAAAACCAAACCCGGCCTAGTACTTATATCGGTTCACAGTGTGCTCAG CTTCTTCCCAGCTCCAGCCGCCAAATCTCATTAGGGTTTCGCCACTGGTATGTAACATCTCTCTTCCTCTCCTCTCTGTT TTCCGCCGCCATTGTTAACAATCTTCCGTTTCCTTGTTTCCAATCGCAGCTGTGAGCTCTTCTTCCACTGATTCCTAACG ATGAGGTACTCAATTCTCTTCACATTCTTGTAACTTGTTCATGCGTTTTTGCTACCAATTTCCACCGTGAGGTGTTTCCT CTGATCTGTATTTGTGTATTGAATGTGCAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCCGGAATCATGACTG ATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGAT AAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACA CGTTGAAGAGGTATTGTTGTGTTTTATTATTACAATTACTATAACATGATATAGTGCTTTAAAGACCATTTGTTTCTGTT CTTGTGTGCCATTTTTGAGTTTGTTTTGAACATTTGAATTACTGGTTGGTTATTAGTATTTAGTAATGACTTAAGTAACT TGAAATGACACAATGTTTCTGTAATTTTCTAACCGTAATTCGAGGGAGCTATTTTTTGCTTTAGAGTTTTTTTAATTTTT GTTCAATTGTTGGGAACTCTGTTGTGTTAATGTCTCTTCGCTACTCTTCAGGCGGAGAAAATTGGATTGGACTGGATGGA TGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCATGCATTTTTAGCTT CTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCCCCCCACCCCAGATG TTGCTCTAGGGTTTTTTAAGTTTTTGGACTTTGAGTGTACTTGGTGATCTTTGTTATGATCATTTCTCATTAATAACTGG CTACTTTTGTTTTGTATTTCTTTTGTGTTACTAGCTGCTTAAGAATCTTCTAAACTGCTTCATATATTCTCTGGTTCAAG CTTTATCCCCCACCCACCCCTATCATGTGATTAATTGATTTGGTTAAAAAAATCAAGAATTGCTATATTAAGCATGTGAT TCTTTCAAATTTTCAAATATTGCTTTAGTTGATTTTTATATTTGTCTGACTATGCAGGCAAGTTCCCTACACTTGTCACT CACCAAGAATCCCTTGAAGCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTTCAGCTCAAAAAGGTGCTCTGCATGGG AGTCGCCGTGGGTAATGTTAGCATGGAAGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAACTTCCTTGTCTCTT TGTTGAAAAAGAACTGGCAAAATGTAAGTACACTCATAACATTTGAGTTAACCATTGCTTTCTGATTTCATTTTAGTTAT CCGTTCTTGATGATAATTAAGATATCAGCTAGTCTTAAGTTTAATGTGTGCGTTTTGCAATGTGCGTAAGTACGGCAATG CGTCTTCAATTTGCATACCTAGTTTGGCTTCAACACCACTGTACATAATGTTACCTCAAATCAAGGATGGACTGTTTGAT AAATGCCTTTTTGGTTTGCATCTTTGCGGATGTGTTGCTTCAGATAACTTTGGGCATATGTAACCCTGACCACGTGGAAT TGCTTTTTGTTTTTTGTTTCTTTTGAATCTGTTTGAGCCAGCCAATAATCTAATATAACCTGTTATTGATTTCAGGTTAG GTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACCGCGTCTTTTAAGGGATTTATTTTTAAATGTTCTGTGAACTTG TGATCGAGCTCAGTATATTGATTATCCTAATAGCAAGTTAGAAAATTTCATGCTACAGTTTTTGGATTAAAGTTTTGGTT TCATATTCGAATAATGGGTAATGTTAAGCTTGCTACATTCAGTGCTGCTTGTGTTCGCTTTCTAATTGTTATAATTAAAA TCCGTAGTATCCGCTGCTTCTAGTCGAAAATGCCATTATTCCAGTGTCGCATGTTCTGGTTTTTAACTGAATACTGTTTC AATAGGGTTCTGGTGGATGCTGTTCACTTGTTCGATGGCGATTATTGTCACTTTAAAATTGTGTACATCATATAACTCTA GTTTTCTTGAAGACTAATTGACAATTTTTTGAAATTGTCTATTTGTTTGCCTTCTCCATCTGGCCTACACCTCTCCCATT TCAGGTTCAGCTATGTGATGCCTCTTTAGCTCTCAAACCTCCACTATTCTCACAGCTGTGACATCCTTTTCCTTGTGCTC TATTTGTGTGTTGGATTTTGGAGGGGACGGAATGGAAATCTATTACTTCCTATTACCCTGTTCTCAAAACCAATGTTTCT TACCATTTCCAAAGAGACATTTTTTCCCACCAGCATTTGGGCTGCGCCAGCATTGCACAACTTTGGGCCCAATTCCTTCA ATTTTATTAATAAATAGTTATAGTTATAGTTATTAATATAGTTGACCAAAAAAATAATTAATATATAGTTGTTAAATCAC TCATTGAATCTTATATTTATTTGTTTTTTATTTTTCTTCATATTTTGAATTTTGTACTTAAATTAGCTGAAATTTTGTAC TTGATGAGTATATTTTATGAAATACTTCGTATGAAAGATGAGAGGAGGAAGTAAAAGAAGTGAATGAGATAAGGCACAAC TCACAAGCTGGCAATTGATTAGCCAACCAAACAAAAACATAAAACCCAAAACATTGAAGGGAATTATATGGTTGATCACT GTAGCGGAATAAGAATTCTCCATATGAGATATCTTGCAGAACTATGTTTCAAAACTCAAACAACAAGCAAACACGCAAGA GAGAATACAGATTACATCTTGA
CDS sequence (LotjaGi6g1v0076800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCCGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATT TGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGATAAGCGTTTCAGTGGCTCTGTCAAGT TGCCCCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACACGTTGAAGAGGCGGAGAAAATTGGA TTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCA TGCATTTTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCC CTACACTTGTCACTCACCAAGAATCCCTTGAAGCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTTCAGCTCAAAAAG GTGCTCTGCATGGGAGTCGCCGTGGGTAATGTTAGCATGGAAGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAA CTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACC GCGTCTTTTAA
Protein sequence (LotjaGi6g1v0076800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIG LDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKK VLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 216 | 216 | 2.0E-49 | ||
| PANTHER | 3 | 216 | 214 | 3.4E-135 | – | |
| PANTHER | 3 | 216 | 214 | 3.4E-135 | – | |
| SUPERFAMILY | 3 | 216 | 214 | 6.15E-66 | ||
| CDD | 9 | 215 | 207 | 8.66768E-62 | ||
| Gene3D | 22 | 211 | 190 | 1.1E-69 | – | |
| Pfam | 22 | 210 | 189 | 3.0E-43 | ||
| Gene3D | 62 | 151 | 90 | 1.1E-69 | ||
| ProSitePatterns | 116 | 135 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi6g1v0076800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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