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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0084400 |
| Transcript ID | LotjaGi6g1v0084400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING zinc finger-containing protein; TAIR: AT2G22120.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10; TrEMBL-Plants: tr|I1MYV9|I1MYV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0084400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16573699..16578982) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGGGAATTCACTAGTTTCCCCGTGGTTTCCATATTCTATCTATGAACGCGTGAAAATGGAAACTTGAAAAATCAAT TCGCACTTTGCAGTTGCAGAGAGTGAAGGAGAAGGAGAAGGAGAAGGAGGAGGATCGACCAGTGAGAGATTCTTCTTCTC CTCTCATCTAGTCAACAATGGTGAATTGGAATTCCCGAGTGTAAATTACTTACTTGAACCCTTTTCCTTCTGAATTTCAA TGGCTGATCATTCAGATTCTTCTCCTCTCGTCCCTCCCCAACCACTCTCTGACGCTTTCGAGATCGACCTCGAAGCTGGT CCCTCTGAACAAATCCAATGCCGGATTTGTCTTGAAACTGATGGTAATTTCACTTCAACCCCTTTTCAATTTCCATTTCT AGGTTACGGCAAATTGTAGTTCAGTAATTTTGAATTACTTGTGATTTGGTATCTTATGCGCGCGGTTTAATTCACTTCGT TCGTTCGTCGATTGATGAAGTGCCCGAGTTGCGGAGTTGAAGCATGTTATGTTATTCACCAAGCTCTGATGATTTTGATA GTAAAAGGATTATAGGGTTCTTATAAGTGCATCTTTTGATTGGAATTTGATTTGAACTGGCTCTTGGAACTGTTGTTATT ATTTGTTATATTGAATTGAATGGTTGCAGTTATTTGAAAGCTTCACTAGTGAGCCTCAAAATTTGGGATGTATCATATCT TATAATCTGATTGGAATTAAAGAGTTATTATAAGTCAACGATACGTGCATATTTTGATTGGAATATTTTTTTAGCTATCA TGTGTTCAGTGTCTCTTGGGACTGTTTTTGTTATATTGAATTGAATGGCTGCAGTTGAAAGCTTCACTAGTGAGCCTCAA ATTTGGGACGTATCATATCATATATCTGATTGGAATTATAGAGTTCTTATAAGTCAACAATACGTGCATATTTTGATTGG AATTTGATTTGAACTTTATTTTTTTTTAGTAATCATGTGTTGAGTGTCACCTGGGACTGTTCTTGTTATATGGAATTGAA TGACTGCAGTTATGTGAAAGCTTCACCAGTGAGCCTCAAATTTGGGATGTACCATATATCTGATCAGTTACCATTTACTT GTTTCTTTTCTTCTTCTCTCTCTCAGGTCGAGATTTTATAGCTCCATGTAAGTGCAAAGGCACATCAAAATATGTACATC GGGATTGTTTGGATCACTGGCGAGCTATTAAGGTAAAGATACTGTCTCTTGTAACATCTTGAAGGAATATTTTTTCAGTA CTTCTGTAGTACATACTCCCCCTATTAAAAAAAGACACCTAACACGTATGATAAGTAATTCCAATTTTATAGTTTTTTAA AATTTAACAACGAGAGTGAATGTCACATTGTGATTTGTGAGATTGGATGTACTGAGTCTTACAGTACATTAGTTATACTG GAAGTTCGCTCCATTATGAAATTGTGGCATGCTTTAGCTACAATAAAGAATTTATCTATATCCCGCCATCATAAAATAAC TACTTCCTTTGTAAGTGGTGATTCGTGATTACCTGTAAGGGTGGAAAGCAGCAATTGTATATGTAGAACTGAGTGAAAGC CATGTTTGGTGGTCACGAACTACTTTGTTTGGCTAATCACTTAAACAAATATCTTCATTATGCTCTTATTTATTGATCTC ACAATATTTTCTTATCTAGGTCTATTAGCCTCTAGTTTACTTGGTAGAATTTCATACAACTAAATAGGTTTTTTGTTGAT TCTATCTCTTCAGTTATCTCTCTATCCCCTGGTCATTCATTATGTTTTTTATGTGTTTTCCAACTTTATTTTGTGTAGTT TATTTTTGCAATTTTAGCTTACACTTGGATTGTAATATGTTTTCCTTGCTTTGCAAGATTTTTTTCCTTCACGTCTCCTG TCATTTACACATTTGGGTTTGTACTCTAGAGCCATCTAGTTGTCATTAAAATGAAGTTTTGTGCTTTTATCTGATGATAA AAAGAACTGAAGTCTATGACCTGACTTTCCTTCGGAAAAGACAAAGATCCTCTTGTATGCTTTGTGCATAATGAGGAGTA AAGTATCAATAACCAGTGATAGATAAACTCCTGGATATTCTGTATTGTATACAAGTATCTGGGATTCTGGATAATATTAA TAATCAGCTTTTATAATACGCAACCACCTACTCTTCATATTCTTTAAAGTTTAACTCAGTTTAGATCCTTGTATTCTAAG CCTAGCAGTTCCATGTGTTAAATGGTGTACTTCAGAGTGCCTCATCTAATAAATATATGTATATCACTTAACGTTCCTGC AGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAA TGGCGTACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATTTTCCTGGCTGTCCAGCTTGTAGGTGAATT TATCCCATTCACGTGGCCATATAGATACTTATCTTCTACTTTATAAATCCGTATATATGACATGAATCTGATTTAGCACC TCATTTCTTTTGCATGCAGATCATCGCCTCTCTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTC GTCTTCTATGGGGTTTTGATAGTGAACTGAGTTTTTATTACATATGTGGTAAGATTGCAATTAACTTGTATCTTAATGTT TAACAAAAATTATTTTCTCTAAACTTCCCCTCTTTTGTCTTGAGTACAGAGTTACCTTGTTTCACATATCAAAAGATACT GGTTTTGGTGTTGATTTCATGCTGTTGTTATTGTTGTTGTTGTCAAATACAGGAGCTCTCTTGTTTTTCGCCTTGCTTGG CCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGGGTTCGCAGTGATTTGGCTCAACCTTGTAGAGAATTATGTCTTT GTTGTTGTCAACCTGGGTAATAACCTTAATTTAATATATTCATGAACCTTTGACATTCTGAAAACACACAGTTATGATCC TGCTTGACACGTCATAGTAATGGTCGTCTTCTTGTTTGGAAATAGTGCTTGGAAAGTAATATTTGATATTTATTTTGCAC TCTATTGGGTATCCCTCTTTAAACAAAGTGAATTGTGAGTGTGTAATAGAACCCAGAAAGTTATGGAGTATTATTGATGA AAACCCTAAGATACAAGAGAGAGACCCAACACGCTCCCAAAACCCAAATCCCAAGTGGTCTCTAAGATAATCCCTAATGC TCACTAACTACTCTTATATATAGGCTACATGCCTCATTAACTTTCTAACTGACCCTCTACCTCACTAACAACTACTATCC CTTCTTAATAACCCCACATACATATGAGTGTGTGTGTGTGTGTACAATTATGTCCATGAGGTCTGGACCTATGATCTAAT GCTAACTACCCAAGCACCTCACACTAGTCCAATCCTAGATTGTCTGTCTGTATAATTTAGATATTTCGCTTATAAAATTT TGTTGCTAATATATTCATGTTTGCATATACTAAACTGGGAAAGAAGGTTGTTACATGTTACAATGAAGTACGTTAAATTA GCAGCAACTCTGTAATTCAGAATGGTAATGATCTGTGACTGGGTTGATTTTTATTTCATGTGCTGTTGTTGCAGAGTTTG TGCAGACTGTCATTTGCCCGGCACTCTCTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAA CAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTATTATTTATAATGGCTTTGATTGTTCTGGGA CTATTTACTGTAATTGGGATATTTTACAGCGTATTGGTGGCTACTATGGTTGGTCAACGCATATGGCAACGCCACTATCA CATACTTGCAAAACGGATGTTAACCAAGGTGTGATTGGTTTACTTTCTCATCTTTTATGCATTTGGTGCATTGCGATTAT GAGTCAAATCTTTCTGTCACTTGGTTTATTTGGTCAGCATTTAAATCCTATATTATATCTTCACTGAGACATTTATTTGG TAAGGAATAGCCAAGAATATCAACCTTAAATGTCTGCTTATGCAACTGGCTTACTTGGACTCTCTTGCATTAGAGCAATG TTTATTGAAAGGATTTTTCTGATGTTCTTGGCTAATGTAAATGTATATCAGCTACTGTGGTGTGGCTGTTTCACTGTACT TAAAAAAGGATCTTGCAGTCTAATGAGTAATTGGCAGAAAACTAAAATCCGAATTTGGAAAGTACTATGCAAACTTAATC CTTCGCTTAGCCAAAAAGGGAAATGGTTGACTCTTGGAGTTGTCTGCTTCCTCTTTCTTAAGCTCATGCTTGCCACACTC TGCAATTTCTTCGTACTTCAATTTTAACCGAAATTCCTTTGTCATCTGCTGCACATGCATGCCCAAGTTGATATTAATTC ACACATCCACCCCTCATGAGTACATGTGTGGTAGAACTTAGTGATGGGAGGGTAACTATCAGTGATACACCAGGCTAGGC ATCCTTTGACTTACATTTGACATGACACTCAAACAATTTGAGATTAGTTATCCTTAATAGTAAATACTGTTAAGCCCATG TGATCTGAAATATCCTGACATTATTTTGATTTGTTGAATATGAAACTTTTACTACTTCTCATCTCAGGAGTATGTGGTTG AAGATGTTGATGGAGAGATGACAGACTCTGATTGGTCTCCCCCTGTCCTTCCACCTGAGCATGTTCAGCAATTGAAAACA TTGGGTCTACTATGAGATTGAAGGACTCTTTAGTCATCTACTGACCAGAATGACAGTACAGATAGGCTGGCACTCGCTTT GTTTTGGTATGCTGGTCCATTTCTTGAAGATCTGCAGTTAATTGATAACAGTGTAATAGCCGCTCAATTCAGTTTGGCTT GAACTGTACATTTGTGCTGAACTGCTCTATGTGGAAATTTATGATTTTATTAATTTGTCCACTAATGTAAAGAAAATGAA AGGATTTTCGAATTCCTAATAACACGTTACTGGTTGCTGCTTGGAAAATCTTGTTTCCGTCTCTGATGGGCGTATGTTCT AAATACCCAACTATTCCAACTATCCAAGAATTTCTAAAAGATAATCCAGGTAATCACCACTTAAAACTAGTTGAGTCATC CTACAGACTGACTTTTAAAGCACTATCTGTGAAATAACATTGACAGATATTCTCCCCCTGCATATGAAAAGATTTGCAAA ATTT
CDS sequence (LotjaGi6g1v0084400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCATTCAGATTCTTCTCCTCTCGTCCCTCCCCAACCACTCTCTGACGCTTTCGAGATCGACCTCGAAGCTGG TCCCTCTGAACAAATCCAATGCCGGATTTGTCTTGAAACTGATGGTCGAGATTTTATAGCTCCATGTAAGTGCAAAGGCA CATCAAAATATGTACATCGGGATTGTTTGGATCACTGGCGAGCTATTAAGGAAGGGTTTGCATTTGCTCACTGCACTACC TGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGGTTTTTTGTCAC CAGAGACATTTTGTTTATTTTCCTGGCTGTCCAGCTTATCATCGCCTCTCTGGCATATTTGGTTTATCTAATAGATGGTT ACCAGCAGTATTGGCTTCGTCTTCTATGGGGTTTTGATAGTGAACTGAGTTTTTATTACATATGTGGAGCTCTCTTGTTT TTCGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGGGTTCGCAGTGATTTGGCTCAACCTTGTAG AGAATTATGTCTTTGTTGTTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCCGGCACTCTCTGTATGTGGACTGATT GCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTA CCATTATTATTTATAATGGCTTTGATTGTTCTGGGACTATTTACTGTAATTGGGATATTTTACAGCGTATTGGTGGCTAC TATGGTTGGTCAACGCATATGGCAACGCCACTATCACATACTTGCAAAACGGATGTTAACCAAGGAGTATGTGGTTGAAG ATGTTGATGGAGAGATGACAGACTCTGATTGGTCTCCCCCTGTCCTTCCACCTGAGCATGTTCAGCAATTGAAAACATTG GGTCTACTATGA
Protein sequence (LotjaGi6g1v0084400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTT CKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLIIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLF FALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGL PLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPPVLPPEHVQQLKTL GLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 109 | 109 | - | – | |
| PANTHER | 3 | 323 | 321 | 1.9E-149 | – | |
| PANTHER | 3 | 323 | 321 | 1.9E-149 | – | |
| Gene3D | 21 | 95 | 75 | 4.4E-17 | ||
| ProSiteProfiles | 26 | 88 | 63 | 20.473 | ||
| SUPERFAMILY | 29 | 86 | 58 | 7.42E-15 | – | |
| SMART | 33 | 82 | 50 | 7.6E-16 | ||
| Pfam | 34 | 81 | 48 | 2.9E-11 | ||
| CDD | 34 | 82 | 49 | 7.02829E-16 | – | |
| TMHMM | 110 | 129 | 20 | - | – | |
| Phobius | 110 | 131 | 22 | - | – | |
| Phobius | 132 | 150 | 19 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 151 | 174 | 24 | - | – | |
| Phobius | 175 | 241 | 67 | - | – | |
| Phobius | 242 | 264 | 23 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 323 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0084400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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