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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0085400 |
| Transcript ID | LotjaGi6g1v0085400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 12; TAIR: AT4G39820.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8K2L8|TPC12_MOUSE Trafficking protein particle complex subunit 12; TrEMBL-Plants: tr|G7J4D2|G7J4D2_MEDTR Trafficking protein particle complex subunit-like protein; Found in the gene: LotjaGi6g1v0085400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16987037..16991182) extracted from Lotus japonicus Gifu genome v1.2.
ACCAAGGCCTGTGGCCCAAGACAAGAAGACCCAAGTGGTGCAGAAGCATAATAACCAAAATAGCCAACACTGAGCGAGAT CCGTTTAGTTTCTCCGGCGATCCCTTTCCGTTCCGCCGCCGCGTCTCCCATCTCCGACCGACCAATGGACTCGGATTCTC CCTCTCCCAGATCCGAATCCCAAACGGACCCTCTCCTCCGCGACCCGTTCGACGAGCTCTGCCACGACCTCTCCTCCCTC CAAGACCTCGCCAGCTGCGGCGCGTGGCGCTCCGTCATCGACAAGGTCTCACGCGCCAGAGCCCTCTCTCTCCTCCACAA GCCCCACGACCACCTCACCTACCTCGCCTTCAACGCCCTCGCCTTCACCAAGCTCCGCCGTTTCAACGAAGCCTCCGCCG AGCTCGACTCCATGGAGGATCTCGACAGCGCGCACTACCGCTACGAAACCTACCCGAAAATCTACCCGAACCGGGTCGGA TCCATGGTCCCGTTCTCCCTCCGGTGGCTCCACGCTCTGATTCCGATCAAATTGGGCCAACGCCAGCAAGGGATGGACCG GTTGTACCGCCTTCTCGATTTCGTGCGGGAGAAGATTAAGGACAAGGAGAACAGTAATCTCAGCGTTTCGCTTGGTATGT GGAGAAAGCGAGAGGTTTTCGTTGTGAATTGCGTGATTGGGCACCATTTGAGTCACAAGGAGTTTGGTGCGTGCTTGAGT TTGATGAAGGAGTTGCTTTCTCGCGATTCTTCGGACCCGATTTTGATTTCGCAGCTGGGGTATATGCAATTGCAAATTGG GGACTTGGAGGGCGCGAAAGTTTCGTTTATGAAGGTGGAAAATGAGGGGAAGAATCATGGGTCGTTGAGTGAGGTTGAGT ATCAGAATCTTGTGAACAGAAATAAGGCATTGGTGTATATGGTTGGGAAGGATTATGTGTCTGCAGTGAGGGAGTATGAG GAGTGCATTGAGAGGGATTCGACTGATGTGGTTGCTGTGAACAATAAGGCTCTCAGTTTGATGTATTTGAGGGACTTGTC GGATTCGATCAAGGTGTTGGAAAATGCACTTGAAAGGGTTCCTACTGTGGCTCTCAATGAGACTATTGTTGTCAATTTGT GTAGTATGTACGAGTTGGCTTATGTTAATCACTCTGATATTAAGAGAACGCTTAGTAGTTGGATTGCTCGCGTTGCTCCG GATGACTTTGATTCAACGTGTACTCGTACGTGAGTGAGGTAGCTTCTGTTTTCTTTTTGCCTGCTGCTATTGGCATTCTT GTAATGTATGATGAATTTGTGTTCTGTTTCATTAATAGGATGATGATTATTCTTATATTTTTCCGACATGTTTACTTGTT TGTGCTTTCAATTATATCTTTGGCCTACCTTTGTGTCTATCTCATTGATGCAATAAGATGTTCATACTTCATTGCATCCC CTTGTACTTGAAAGTTGTAACATACTCAATTGAGCTACTGGTGTATGTATTTGCAAACACCTCTTCAATCTGTTCTGTGC TTCGACGTGGTTGAAGAAATAACAGTAAAAAATATTAAGGTTCGTGAGTATTGGCCAGTGCATTTTAAACTTTGAGCATC AGCATGGTAGGATAAAATCTAAGAGTATGGATGATTGCTGACTTTGTTTGTTAGCTCTATAATGAATTAACTATTCAAAA TGTTAGAAGTTATTTGAGGGAGACACATGAATGATTTTAGAATAGAATTCTAATAAGCCCATTCTGGACAAGGTATCTTC CATGTTGGAATGAAAGTGGCCTTTTGTTTTATAACTTATACATGGAGTCTTTCAATCTATGGTTATTGTCTTGTTGGTGA AACTTTCATGCAGCAAATAGGTGATCGCTTCTATTGATGAATTGGTGTCTCTGCTAAACTAGTTCATTTCCCTCTTGTTT GATCCTGTTAGACCAAGTTACATCTTTGTATTGGTGATTTGAATTCGAAATACTCTTGATTCCTCATATGCCTTAAATTT CTTCAGACTTTAGAGATGCACTTGGAAGTTGGAATTCTCTTGAGTTTTCTGATGATTTTGTTTCCAATCAGTCCACCTTG TCTTTGTTTCTGTAAAGATAATGTCATAACTAACCTTTTTTTATGACTGCCATTTTTAATTTAGCATTTCTAGTTTGTAT ATAGTTTTATCTTTTTACAGTCTGTTAAGAACTAAAGAAAATGCACTTTTTTGTTTTTATTCTTTTGAGTTGTTTTTTTT TTTTTTTAGATAAGCTATTCTTTTGAGTTGTTTTATTACAAAAAAAAAAAGAAGAAAATGGTGGTGGTAGTGTACTACTG TGATTTATGGCGATGGACCTTCGGTTTTGGTTGGCTTATCCCTTTTTACTGAACTGCAAATTGGAGTATTTGCGACTTTG CGTATTGCTTCTATTTCATCTCTATTATTACCTTCTGTTAATTGAATATGATTGGTGGAAGGTGAGATGAAAATGTAAAG CCTTTGATTAGTATACCTTATTCTTCATTTTAATGAACATGCATTCCTTTGGATTATGTCTTGAAGAATTGATTTGGGTG GAGTCGAATAGAGTGCCTCATAATTGTTGAAATTCGTTTGGTCGTCCTGTGGTCAGGTTGATTCTTCTAATATTTATCTC ATCAAAAGCATAAGTTCTGTTCAAGAAAAAGCATCAAAAAAAAGAAAAAGCATCAAGAACAAAGTCAACTAGTCAGTGTA TTGCTTTTCCTTAAGAACCTTGGAATGTACATATTTCATTAAGCATGAAAGAGCCTTCTATATAATCGAGGTTTCATTGG CTACAATTAATGTGATGGAGAGAATCAGGTAATAACATTAGAGGGGAAAAGAATCAAGTGATCCCATTAACTGTGTTCAT GGTGAGGAGCAAATCAAGCAATCACATTTAAGGGGAGGAGGGAATTCTGGTGTTTCCTTCAGCGGTGGCTAGCTCATCTT GGCATTTGTGTAGCCGGTGGGGGTCAATATCCGTTGTACACGTAGGAAAGAGACGCCCAACGTGGACAATTCAGTCATAT AGAAGCTCTCCAATGGTCCACAATCCGCAAGGCTTGGGGTTAAGAAGCTTAAAGACAAAAAAGCCTTGCAATTGCTCTTC GGAGGGTACTACGTTGGTTGTATCGTTATTTCAGGCTCAAGGTCCTTTGAGCTTGAATAATGTGAGGTTAGTGTCTTGGG CCTTTTATTCTCATTTGGGGTGACTCTTGGGTGCCTGGTACACTTAAATGAGCAGGAACAATGGTGCTCATTCAAAGCAG AGATTAGCCTCTATTGGATCTTTCTACGTGGTGGCTTTTGGTCCTTTGATGTCTCGCGCCCAAACTCCCCCTGCATATGG TAATTGTTATTTTACATTCACGAAGTGTGATCTCCTTTCAACTTTGACAAGTTTTGCTTAGGTCACTCAGCCCTCCATAA ATGGTTAATTTCATCACTATGAAACGTCGGATTTCGTGGTCGCTATTTCACACTAATGACCAGGATATCCCTCTCTCATA GAGTGATTGGATGACCACCTTTTTTTTTTCTTTCTTGATCTTGAACTAGGTTCGCCATCTGGTACTGCAATAGAAAACTT TGTTGACGCATGTCTGGTAAATTGGATTCCTAAATTCGCTATATTTATTGGACGACCTCCTATTCGACATTGCAAATTGA TGTGTCGTTATGCTACCCTGATATGTTTCCAACCATCTTTGCAGTCGTCACCTCCTTTTGCCTGTCATTCTCTATAATCG ATGGACCTCCAATTCTCCTTAGTTGTTCAAGAGTGTGGACTACCTAAGTTTGAAGCTAAACATTTTGTTGGCAGAGGTTA GCTAGACTTTCTATTTATTCCGTGAAGCAAATTTTCTGAGACTCCTCCTTTATCCCCATTAGGGTTTGAAGGTCCCACTT CTAGCTCCTATAATATATTTTTTGGTTGATTATTCAAGCCAAAAATAAATGCAAAGTAATCCATCAATTTTTGTAAGTAA CTTCTTTGGACCCAAAATGGTGGGTATGAGTTTGAATTAGTTTACTTCAAGACAATATAAGAGATTAATTTTTGTTCAAA TGTATCTCTAAGCACAGTTACCAAAAAGTGATTTACTTTTGGGGAAACAACCCTCTTCAACCAAAC
CDS sequence (LotjaGi6g1v0085400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCGGATTCTCCCTCTCCCAGATCCGAATCCCAAACGGACCCTCTCCTCCGCGACCCGTTCGACGAGCTCTGCCA CGACCTCTCCTCCCTCCAAGACCTCGCCAGCTGCGGCGCGTGGCGCTCCGTCATCGACAAGGTCTCACGCGCCAGAGCCC TCTCTCTCCTCCACAAGCCCCACGACCACCTCACCTACCTCGCCTTCAACGCCCTCGCCTTCACCAAGCTCCGCCGTTTC AACGAAGCCTCCGCCGAGCTCGACTCCATGGAGGATCTCGACAGCGCGCACTACCGCTACGAAACCTACCCGAAAATCTA CCCGAACCGGGTCGGATCCATGGTCCCGTTCTCCCTCCGGTGGCTCCACGCTCTGATTCCGATCAAATTGGGCCAACGCC AGCAAGGGATGGACCGGTTGTACCGCCTTCTCGATTTCGTGCGGGAGAAGATTAAGGACAAGGAGAACAGTAATCTCAGC GTTTCGCTTGGTATGTGGAGAAAGCGAGAGGTTTTCGTTGTGAATTGCGTGATTGGGCACCATTTGAGTCACAAGGAGTT TGGTGCGTGCTTGAGTTTGATGAAGGAGTTGCTTTCTCGCGATTCTTCGGACCCGATTTTGATTTCGCAGCTGGGGTATA TGCAATTGCAAATTGGGGACTTGGAGGGCGCGAAAGTTTCGTTTATGAAGGTGGAAAATGAGGGGAAGAATCATGGGTCG TTGAGTGAGGTTGAGTATCAGAATCTTGTGAACAGAAATAAGGCATTGGTGTATATGGTTGGGAAGGATTATGTGTCTGC AGTGAGGGAGTATGAGGAGTGCATTGAGAGGGATTCGACTGATGTGGTTGCTGTGAACAATAAGGCTCTCAGTTTGATGT ATTTGAGGGACTTGTCGGATTCGATCAAGGTGTTGGAAAATGCACTTGAAAGGGTTCCTACTGTGGCTCTCAATGAGACT ATTGTTGTCAATTTGTGTAGTATGTACGAGTTGGCTTATGTTAATCACTCTGATATTAAGAGAACGCTTAGTAGTTGGAT TGCTCGCGTTGCTCCGGATGACTTTGATTCAACGTGTACTCGTACGTGA
Protein sequence (LotjaGi6g1v0085400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSDSPSPRSESQTDPLLRDPFDELCHDLSSLQDLASCGAWRSVIDKVSRARALSLLHKPHDHLTYLAFNALAFTKLRRF NEASAELDSMEDLDSAHYRYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGMDRLYRLLDFVREKIKDKENSNLS VSLGMWRKREVFVVNCVIGHHLSHKEFGACLSLMKELLSRDSSDPILISQLGYMQLQIGDLEGAKVSFMKVENEGKNHGS LSEVEYQNLVNRNKALVYMVGKDYVSAVREYEECIERDSTDVVAVNNKALSLMYLRDLSDSIKVLENALERVPTVALNET IVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDSTCTRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 361 | 340 | 3.5E-137 | – | |
| PANTHER | 22 | 361 | 340 | 3.5E-137 | – | |
| Gene3D | 32 | 333 | 302 | 4.1E-14 | ||
| Coils | 137 | 157 | 21 | - | – | |
| SUPERFAMILY | 194 | 317 | 124 | 1.14E-12 | ||
| SMART | 205 | 238 | 34 | 160.0 | ||
| ProSiteProfiles | 248 | 315 | 68 | 9.901 | ||
| SMART | 248 | 281 | 34 | 37.0 | ||
| SMART | 282 | 315 | 34 | 7.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0085400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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