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LotjaGi6g1v0085500.1

Overview

Field Value
Gene ID LotjaGi6g1v0085500
Transcript ID LotjaGi6g1v0085500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT2G22250.1 aspartate aminotransferase; Swiss-Prot: sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; TrEMBL-Plants: tr|A0A151U932|A0A151U932_CAJCA Aspartate aminotransferase; Found in the gene: LotjaGi6g1v0085500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:16996631..17000796) extracted from Lotus japonicus Gifu genome v1.2.

TTGTGTTTCAGTTGGTGAATGGTGTAAGACCAACACGAAAACATGATCCTATTAAACTATTTTGTTTAGGTCTAAGACAA AGACTTGTGAAGGAACAAGAGAAGTTCCCCTTAGATTTGCTTACTAACACTACATTCATTGCATTTGCTCCTATACTATA CACCAACTCGCTCCCACCAACCCTTCTCCTTCATACTCTTACTACTAATGTAACACTTGACATATTATATTCTCTTTTTC TTCATGCAAATTTGACCATTAATTGATTTGCTTCTTTCCATTTTACAAACTCTACTACTGATTCCATTATCCTTGTGATT TCCATGGCCAACATGCTACATAACGCTTCCATCTCTAGAATCCCCTTAGGAAATCAATGCCCCAATATTGTTGATTCTGT TTCACGTTGTTGCGCTTTTCCATCCATCTCCTCTGATCTTCCTGTTATTAGGTGAGTGTTCAATTCCTTAGGTTTTTCTA TTAGCTTCATTCTGCTAATTAAGGCTTTTTGCATGATAATTTTGGATTTGTAGATCATTGCAGAAGGGAAAACATGTTGA GCTGAGGAAAACAATTGTGTTGGCAAAGAGTAACAAGTTTGATGACACAGAAGAAGTTGATGTTTCTTTGAGCCCGAGAG TTAATGCTGTGAAACCTTCCAAGACAGTCGCCATAAGTGACCATGCCACTGCTCTTTTACAAGCTGGAGTTCCTGTTATT CGCTTAGCAGCTGGAGAACCTGATTTTGATACACCGCCTGTTATAGCTGAGGTGAACAATTCTTATTTAATTTCTCTGTA ATTTCCACTCAATTTGTTTTCTAAATTTTAAGTAAACATGTTCATTGAATTCTATTCTATTTTTTTTCTTATGGGGGTAT CAATATCATGATCATGTCATGACACATTTATGGGCATGGTAGGCTGGGATGAATGCAATTCGTGAAGGTTACACGAGATA CACCCCCAATGCTGGAACATTAGAACTACGCCAAGCAATTTGTCATAAGCTAAAAGGTTGCACATTCTTCTTCATTTGTG AGATATACATATCTATATTATTAAGTAGATCATGTTTACCAAATTTCATAAAATTTAAATATGTGCCAAAGAATTTCTGA TTCAACTGAAATTTGGCTTACATGATCATCAAGTTACAAATTTAAGTTTGAAGTGTTTCGTAATGTTGTTGCAGAGGAGA ATGGAATTACATATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTGTTATTCAAGCAGTGCTTGCAGTT TGCTCCCCAGGAGATGAGGTATGTACTGTACTCTGTGATAAGCTTTCAGAATACTTGTGATTTTGGAAAGCTTATTACAT TCATGTTGTTTCTATTTTGCAAGCTGTGGTGATTTTCAGTTGCTTTGTACTCTGTATTTGAGCAATGCTCACCTGAGTGC GGTAGTGTTTCTAGTTGAAATTAAAAGTTGAAGACAATCTTAAAATAATTTCAACTTGAGTTTTGATTGATTACCCTAAG CGAGGTCTCAGGTTCAAGTCTTGTATTTGGAAAAAACCATCGGCAGGAGAGAAAACCCAACCGGGATGTGGATGTTCTGG CCAGAACAGGATTTCCTCCTATATTGGATACCTGTATTAGACAAAAAATAACATGAGTTTTGATATCATTTTTATAATTA TGTTAGCTCGATTTGAGCTTTTGAGTAATTGGTTGTACTTGTAGACGCTGTTCTCATGCAAGAATTGCTCCTTTGAATGT TTCAGGTCATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGATTGGCTGATGCAACTCCTGTGATTCTT CCGACCAACATATCCGAAAATTTTCTTTTGGATCCAAAACTCCTTGAATCCAACCTTACTGAAAGATCTAGACTTCTTAT TCTTTGTTCTCCATCTAACCCAACAGGATCTGTGTACCCTAAGACATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGC ACCCTAGGCTTCTGGTACAGACATTACTCCATGATGCTTGATTGATTGTGTTCTCCTAAACAAATTTGCTTTCAAGATAT CTATGGCTGGTTTTTACAGGTTCTTTGTGACGAAATTTACGAGCACATAATCTATGCACCGGCAACTCATACAAGCTTTG CATCTTTACCAGGCATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGTTAGTTTGTAATGATACATTATTTTG CTGAGAGAATGTAACTTCTAATTACTATAAAGTATTCATGGGTAGGTTGGTGGTGTTTGTGTTGTTGAGCCCTTGTTTTT TTGTTTTCAACTCAATGGAAATTCTGTATGGTGTTTGTGTTGTTGAACCCTTGTTTGGTTATATAATAACGGATTTGAAA TTGTAACCAAATATCGCTGTCCAGCATATATTTTGACAGTAGCAGGATCACTAGTTCACTATAACTGACTAAATGAAGTT CTCCACCATAAAATTCAAACGTTACACTGAATGAAATAAAAGTTTCATGTTAGGTTTTGAATTAATGAACCTCTACCATA ACCCTTAGCCTTCTAAATTCTAATAGTAATTCTTAATATGTTTGTAAATTATACCAATGTAGAAAGCCTTGGAATTGGAT TATGATGCTTTTAGATCGTTTTCTTGTAGACATTTGCAATGACAGGTTGGCGGCTTGGGTATGTTGCAGGACCAAAACAT TTCATTACAGCATGTGGAAAGATTCAAAGTCAGGTCTGCTGTAATTTTTATTGCCCTTTTTAACAACAATGTGGAACTTA ACATTGAACAATCCTTGATTTCCTATTGATCCAAGACATGTAGTAGATTAGATTTTACTACATGTTGGTATTTGTATCAT ATGTATTATGTATCATATAATGTGTGACAAATCTTGTTGAATATACAGTTCACATCTGGAGCAAGTAGCATATCTCAAAA AGCTGCTGTTGCTGCATTAGGACTAGGCTATGCAGGGGGAGAGGTTGTTTCTTCCATGGTGAAAGCATTCAGGGAAAGAA GGGATTTTTTGATTAGAAGTTTTGGAGAAATGGAAGGGGTGAAAATATCAGAACCACAGGTGCAAGCATGGTTACTTCAT AAGGCTGTTGCTCAACAGTTACTTTACATTATGCTTTATTATACTTTTCATAAATATACTATTCTTTGTACTTTCAGGGA GCATTTTATCTGTTCATTGATTTCAGCTCATATTATGGAAGAGAAGCGGAAGGGTTTGGTACAATTGAGAATTCTGACTC GCTCTGTAGATACTTGCTGGACAAGGGCCTGGTATATACTCTCATTTAATGGCCTTCTAAAATAGGAAATATATACTACC AACATCTTCTTTAGCATATTATTTTTCTTTCTAACACACTCATTTGAGAAATCGATTCGAACCAACTATCACAAAAGCTT GTGCTTACACGAAAACACGAATGATTTTACATTATACTTTTAACACGTCTGCTCACACAAAAGTTTAAAGTTTATTGAGC TTAAAGATCACTGTCCAGAGACTCGGATACCAATTATAGTACCATTTTATAGGTCAACTATCCAAAAAAACTCAAATTGT TGGGTAATAAACACATGAATGATTTTCTATTATATTTCTAACACGGGGTAATTTACAGGTTGCCGTGGTGCCGGGGAGTG CATTTGGAGATGATTCTTGCATCCGCATCTCTTATGCAGCATCACTTCCTACTTTAGAGGCAGCCTTAGAGAGAATTAAG AAAGCACTTTTCCCTCTAACCTCTGCTTAGTTTGTTTAATCAAAGGGTAATCTGGCTGATTCCAAAGCTAAGTACGACAG ACTCATTTGATTAGACCTTACCCGGGTTTATTGTACTGTAATTTTAACATCTCATTGCCATCTCTGTCATGACCTGAGTC AGACTTATTTGTTTTCAGAAAAAAAGATAAAAATAAAAATTTCTTTCTATTGATGTATGCAAAATTGCAAACTGTAAACT GTGACTGTGTGCTCCATGGAGTCTTTTGGTTGGGGGTTATTGTTGGAGTACATAGATACCCTCAAAGTTTGTCAGAACCA CACTTAACCACATTATTAGCCAAAATCTACACCTCACTACACCTATTTTAACAAGTTAACACAAGTTTCAAAGATTCAAA TAGAAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0085500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAACATGCTACATAACGCTTCCATCTCTAGAATCCCCTTAGGAAATCAATGCCCCAATATTGTTGATTCTGTTTC ACGTTGTTGCGCTTTTCCATCCATCTCCTCTGATCTTCCTGTTATTAGATCATTGCAGAAGGGAAAACATGTTGAGCTGA GGAAAACAATTGTGTTGGCAAAGAGTAACAAGTTTGATGACACAGAAGAAGTTGATGTTTCTTTGAGCCCGAGAGTTAAT GCTGTGAAACCTTCCAAGACAGTCGCCATAAGTGACCATGCCACTGCTCTTTTACAAGCTGGAGTTCCTGTTATTCGCTT AGCAGCTGGAGAACCTGATTTTGATACACCGCCTGTTATAGCTGAGGCTGGGATGAATGCAATTCGTGAAGGTTACACGA GATACACCCCCAATGCTGGAACATTAGAACTACGCCAAGCAATTTGTCATAAGCTAAAAGAGGAGAATGGAATTACATAT ACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTGTTATTCAAGCAGTGCTTGCAGTTTGCTCCCCAGGAGA TGAGGTCATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGATTGGCTGATGCAACTCCTGTGATTCTTC CGACCAACATATCCGAAAATTTTCTTTTGGATCCAAAACTCCTTGAATCCAACCTTACTGAAAGATCTAGACTTCTTATT CTTTGTTCTCCATCTAACCCAACAGGATCTGTGTACCCTAAGACATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCA CCCTAGGCTTCTGGTTCTTTGTGACGAAATTTACGAGCACATAATCTATGCACCGGCAACTCATACAAGCTTTGCATCTT TACCAGGCATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGACATTTGCAATGACAGGTTGGCGGCTTGGGTAT GTTGCAGGACCAAAACATTTCATTACAGCATGTGGAAAGATTCAAAGTCAGTTCACATCTGGAGCAAGTAGCATATCTCA AAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCAGGGGGAGAGGTTGTTTCTTCCATGGTGAAAGCATTCAGGGAAA GAAGGGATTTTTTGATTAGAAGTTTTGGAGAAATGGAAGGGGTGAAAATATCAGAACCACAGGGAGCATTTTATCTGTTC ATTGATTTCAGCTCATATTATGGAAGAGAAGCGGAAGGGTTTGGTACAATTGAGAATTCTGACTCGCTCTGTAGATACTT GCTGGACAAGGGCCTGGTTGCCGTGGTGCCGGGGAGTGCATTTGGAGATGATTCTTGCATCCGCATCTCTTATGCAGCAT CACTTCCTACTTTAGAGGCAGCCTTAGAGAGAATTAAGAAAGCACTTTTCCCTCTAACCTCTGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0085500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANMLHNASISRIPLGNQCPNIVDSVSRCCAFPSISSDLPVIRSLQKGKHVELRKTIVLAKSNKFDDTEEVDVSLSPRVN AVKPSKTVAISDHATALLQAGVPVIRLAAGEPDFDTPPVIAEAGMNAIREGYTRYTPNAGTLELRQAICHKLKEENGITY TPDQVVVSNGAKQSVIQAVLAVCSPGDEVIIPAPFYVSYPEMARLADATPVILPTNISENFLLDPKLLESNLTERSRLLI LCSPSNPTGSVYPKTLLEEIAQIVAKHPRLLVLCDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKTFAMTGWRLGY VAGPKHFITACGKIQSQFTSGASSISQKAAVAALGLGYAGGEVVSSMVKAFRERRDFLIRSFGEMEGVKISEPQGAFYLF IDFSSYYGREAEGFGTIENSDSLCRYLLDKGLVAVVPGSAFGDDSCIRISYAASLPTLEAALERIKKALFPLTSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43795
57 471 415 3.4E-216 –
PANTHER
PTHR43795:SF64
57 471 415 3.4E-216 –
SUPERFAMILY
SSF53383
75 469 395 9.65E-114
IPR015424
Gene3D
G3DSA:3.90.1150.10
99 465 367 8.4E-131
IPR015422
Pfam
PF00155
103 465 363 1.1E-70
IPR004839
CDD
cd00609
105 467 363 2.97014E-112 –
Gene3D
G3DSA:3.40.640.10
134 356 223 8.4E-131
IPR015421
ProSitePatterns
PS00105
306 319 14 -
IPR004838

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0085500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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