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LotjaGi6g1v0085500.2

Overview

Field Value
Gene ID LotjaGi6g1v0085500
Transcript ID LotjaGi6g1v0085500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT2G22250.1 aspartate aminotransferase; Swiss-Prot: sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; TrEMBL-Plants: tr|I1LN02|I1LN02_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0085500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:16996954..17000429) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCAACATGCTACATAACGCTTCCATCTCTAGAATCCCCTTAGGAAATCAATGCCCCAATATTGTTGATTCTGTTTC ACGTTGTTGCGCTTTTCCATCCATCTCCTCTGATCTTCCTGTTATTAGGTGAGTGTTCAATTCCTTAGGTTTTTCTATTA GCTTCATTCTGCTAATTAAGGCTTTTTGCATGATAATTTTGGATTTGTAGATCATTGCAGAAGGGAAAACATGTTGAGCT GAGGAAAACAATTGTGTTGGCAAAGAGTAACAAGTTTGATGACACAGAAGAAGTTGATGTTTCTTTGAGCCCGAGAGTTA ATGCTGTGAAACCTTCCAAGACAGTCGCCATAAGTGACCATGCCACTGCTCTTTTACAAGCTGGAGTTCCTGTTATTCGC TTAGCAGCTGGAGAACCTGATTTTGATACACCGCCTGTTATAGCTGAGGTGAACAATTCTTATTTAATTTCTCTGTAATT TCCACTCAATTTGTTTTCTAAATTTTAAGTAAACATGTTCATTGAATTCTATTCTATTTTTTTTCTTATGGGGGTATCAA TATCATGATCATGTCATGACACATTTATGGGCATGGTAGGCTGGGATGAATGCAATTCGTGAAGGTTACACGAGATACAC CCCCAATGCTGGAACATTAGAACTACGCCAAGCAATTTGTCATAAGCTAAAAGGTTGCACATTCTTCTTCATTTGTGAGA TATACATATCTATATTATTAAGTAGATCATGTTTACCAAATTTCATAAAATTTAAATATGTGCCAAAGAATTTCTGATTC AACTGAAATTTGGCTTACATGATCATCAAGTTACAAATTTAAGTTTGAAGTGTTTCGTAATGTTGTTGCAGAGGAGAATG GAATTACATATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTGTTATTCAAGCAGTGCTTGCAGTTTGC TCCCCAGGAGATGAGGTATGTACTGTACTCTGTGATAAGCTTTCAGAATACTTGTGATTTTGGAAAGCTTATTACATTCA TGTTGTTTCTATTTTGCAAGCTGTGGTGATTTTCAGTTGCTTTGTACTCTGTATTTGAGCAATGCTCACCTGAGTGCGGT AGTGTTTCTAGTTGAAATTAAAAGTTGAAGACAATCTTAAAATAATTTCAACTTGAGTTTTGATTGATTACCCTAAGCGA GGTCTCAGGTTCAAGTCTTGTATTTGGAAAAAACCATCGGCAGGAGAGAAAACCCAACCGGGATGTGGATGTTCTGGCCA GAACAGGATTTCCTCCTATATTGGATACCTGTATTAGACAAAAAATAACATGAGTTTTGATATCATTTTTATAATTATGT TAGCTCGATTTGAGCTTTTGAGTAATTGGTTGTACTTGTAGACGCTGTTCTCATGCAAGAATTGCTCCTTTGAATGTTTC AGGTCATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGATTGGCTGATGCAACTCCTGTGATTCTTCCG ACCAACATATCCGAAAATTTTCTTTTGGATCCAAAACTCCTTGAATCCAACCTTACTGAAAGATCTAGACTTCTTATTCT TTGTTCTCCATCTAACCCAACAGGATCTGTGTACCCTAAGACATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACC CTAGGCTTCTGGTACAGACATTACTCCATGATGCTTGATTGATTGTGTTCTCCTAAACAAATTTGCTTTCAAGATATCTA TGGCTGGTTTTTACAGGTTCTTTGTGACGAAATTTACGAGCACATAATCTATGCACCGGCAACTCATACAAGCTTTGCAT CTTTACCAGGCATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGTTAGTTTGTAATGATACATTATTTTGCTG AGAGAATGTAACTTCTAATTACTATAAAGTATTCATGGGTAGGTTGGTGGTGTTTGTGTTGTTGAGCCCTTGTTTTTTTG TTTTCAACTCAATGGAAATTCTGTATGGTGTTTGTGTTGTTGAACCCTTGTTTGGTTATATAATAACGGATTTGAAATTG TAACCAAATATCGCTGTCCAGCATATATTTTGACAGTAGCAGGATCACTAGTTCACTATAACTGACTAAATGAAGTTCTC CACCATAAAATTCAAACGTTACACTGAATGAAATAAAAGTTTCATGTTAGGTTTTGAATTAATGAACCTCTACCATAACC CTTAGCCTTCTAAATTCTAATAGTAATTCTTAATATGTTTGTAAATTATACCAATGTAGAAAGCCTTGGAATTGGATTAT GATGCTTTTAGATCGTTTTCTTGTAGACATTTGCAATGACAGGTTGGCGGCTTGGGTATGTTGCAGGACCAAAACATTTC ATTACAGCATGTGGAAAGATTCAAAGTCAGGTCTGCTGTAATTTTTATTGCCCTTTTTAACAACAATGTGGAACTTAACA TTGAACAATCCTTGATTTCCTATTGATCCAAGACATGTAGTAGATTAGATTTTACTACATGTTGGTATTTGTATCATATG TATTATGTATCATATAATGTGTGACAAATCTTGTTGAATATACAGTTCACATCTGGAGCAAGTAGCATATCTCAAAAAGC TGCTGTTGCTGCATTAGGACTAGGCTATGCAGGGGGAGAGGTTGTTTCTTCCATGGTGAAAGCATTCAGGGAAAGAAGGG ATTTTTTGATTAGAAGTTTTGGAGAAATGGAAGGGGTGAAAATATCAGAACCACAGGTGCAAGCATGGTTACTTCATAAG GCTGTTGCTCAACAGTTACTTTACATTATGCTTTATTATACTTTTCATAAATATACTATTCTTTGTACTTTCAGGGAGCA TTTTATCTGTTCATTGATTTCAGCTCATATTATGGAAGAGAAGCGGAAGGGTTTGGTACAATTGAGAATTCTGACTCGCT CTGTAGATACTTGCTGGACAAGGGCCTGGTATATACTCTCATTTAATGGCCTTCTAAAATAGGAAATATATACTACCAAC ATCTTCTTTAGCATATTATTTTTCTTTCTAACACACTCATTTGAGAAATCGATTCGAACCAACTATCACAAAAGCTTGTG CTTACACGAAAACACGAATGATTTTACATTATACTTTTAACACGTCTGCTCACACAAAAGTTTAAAGTTTATTGAGCTTA AAGATCACTGTCCAGAGACTCGGATACCAATTATAGTACCATTTTATAGGTCAACTATCCAAAAAAACTCAAATTGTTGG GTAATAAACACATGAATGATTTTCTATTATATTTCTAACACGGGGTAATTTACAGGTTGCCGTGGTGCCGGGGAGTGCAT TTGGAGATGATTCTTGCATCCGCATCTCTTATGCAGCATCACTTCCTACTTTAGAGGCAGCCTTAGAGAGAATTAAGAAA GCACTTTTCCCTCTAACCTCTGCTTAGTTTGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0085500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGCAATTCGTGAAGGTTACACGAGATACACCCCCAATGCTGGAACATTAGAACTACGCCAAGCAATTTGTCATAA GCTAAAAGAGGAGAATGGAATTACATATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTGTTATTCAAG CAGTGCTTGCAGTTTGCTCCCCAGGAGATGAGGTCATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGA TTGGCTGATGCAACTCCTGTGATTCTTCCGACCAACATATCCGAAAATTTTCTTTTGGATCCAAAACTCCTTGAATCCAA CCTTACTGAAAGATCTAGACTTCTTATTCTTTGTTCTCCATCTAACCCAACAGGATCTGTGTACCCTAAGACATTACTTG AAGAGATAGCCCAAATTGTAGCAAAGCACCCTAGGCTTCTGGTTCTTTGTGACGAAATTTACGAGCACATAATCTATGCA CCGGCAACTCATACAAGCTTTGCATCTTTACCAGGCATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGACATT TGCAATGACAGGTTGGCGGCTTGGGTATGTTGCAGGACCAAAACATTTCATTACAGCATGTGGAAAGATTCAAAGTCAGT TCACATCTGGAGCAAGTAGCATATCTCAAAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCAGGGGGAGAGGTTGTT TCTTCCATGGTGAAAGCATTCAGGGAAAGAAGGGATTTTTTGATTAGAAGTTTTGGAGAAATGGAAGGGGTGAAAATATC AGAACCACAGGGAGCATTTTATCTGTTCATTGATTTCAGCTCATATTATGGAAGAGAAGCGGAAGGGTTTGGTACAATTG AGAATTCTGACTCGCTCTGTAGATACTTGCTGGACAAGGGCCTGGTTGCCGTGGTGCCGGGGAGTGCATTTGGAGATGAT TCTTGCATCCGCATCTCTTATGCAGCATCACTTCCTACTTTAGAGGCAGCCTTAGAGAGAATTAAGAAAGCACTTTTCCC TCTAACCTCTGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0085500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNAIREGYTRYTPNAGTLELRQAICHKLKEENGITYTPDQVVVSNGAKQSVIQAVLAVCSPGDEVIIPAPFYVSYPEMAR LADATPVILPTNISENFLLDPKLLESNLTERSRLLILCSPSNPTGSVYPKTLLEEIAQIVAKHPRLLVLCDEIYEHIIYA PATHTSFASLPGMWDRTLTVNGFSKTFAMTGWRLGYVAGPKHFITACGKIQSQFTSGASSISQKAAVAALGLGYAGGEVV SSMVKAFRERRDFLIRSFGEMEGVKISEPQGAFYLFIDFSSYYGREAEGFGTIENSDSLCRYLLDKGLVAVVPGSAFGDD SCIRISYAASLPTLEAALERIKKALFPLTSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43795:SF64
1 347 347 4.4E-184 –
PANTHER
PTHR43795
1 347 347 4.4E-184 –
CDD
cd00609
2 343 342 4.46965E-105 –
Gene3D
G3DSA:3.90.1150.10
2 341 340 1.2E-120
IPR015422
SUPERFAMILY
SSF53383
2 345 344 5.03E-102
IPR015424
Pfam
PF00155
6 341 336 2.8E-66
IPR004839
Gene3D
G3DSA:3.40.640.10
10 232 223 1.2E-120
IPR015421
ProSitePatterns
PS00105
182 195 14 -
IPR004838

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0085500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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