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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0088600 |
| Transcript ID | LotjaGi6g1v0088600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G30300.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1LLU2|I1LLU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0088600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:18390214..18392836) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTGGATAGTTTAACTTTTTGTCCATCTCCTTAAGGCCTCATGAATCTGGTTTTGTTCTCAGATTTTCTTGCAAAACC TTTAACTTTCCATAACTGCTTTAATTGAAACATAGAAGTTCTGTTTTCAAGCTTTAGTATTTGGTCCAATTAGGCTATTT TTCATTACCATATCGTACATTTTAAGTGCCATCATGTTTCTGACTTTGGTTTTCACACCTGAGGACTCTACCCCATCCAC CTCTTCTATACATACCCATCAACCAAGCTAAGAAGTTTAACTCTAATTTTTTTAATTTTTCTGAAGCTTCTTCAGCAATC ACCATGTCTTCTACTACACTTCAATGGCTAAGCCTTGTGGGTATTGTTTGGCTCCAAGCCATAAATGGGACAAATACCAA TTTTCCTGCTTACTCTTCCCAGCTGAAGGAGCTTCTTTCTATTTCTCAAGTGCAGCTCAATAACCTTTCTTTTGCCTCTG ATGCAGGGAAATTTCTTGGCTGGTTTTCTGGCCTTGCTTCTCTTTACCTCCCCCTCTGGCTTGTCCTCATAATCGGTTCG GTTCTTGGGTTAATCGGCTATGGAGTGCAATTTCTCTTTATAACTAACCACATTGCCTCTCTGTCTTATTGGCATGTTTT CTTGCTAACGTTTCTAGCTGGAAATAGTATTTGTTGGATTAACACAGTTTGCTATGTTGTTGCCATAAGAAACTTCCTAT CTGATAGCAAAGTTGCTGTGGGATTAACAACCAGTTACCAAGGATTAAGTGCAAAGATCTATACCAATATTGTTGAAGCT GTTTCTCCAGATAAAAAAGCTGTAAACTTTCTCTTATTGAACTCTCTAATACCAATTGTAGTTAGCCTAATAGTAGCTCC TTTTCTCAGAGAAATTGAAGTTACAAGCTCCAAGCACACAGGTGTTGGATTTGCTGTTATGTTTGTTATTACAATTGCCA CTGGAATTTATGCTGTTATGAGCAGCTTGCAATTTGTCACAAGCAAACTATCCTCACTGGGAATCCTGATTGGTCTTATA GTTTCCCTTCTCTTCGCTCTATTAGTCCCACCTTCACTTAAGATCAAGAATCTAGCAGGGGCATGGCACAAAAATAGAGA AAGACTTAGAGTCTACCATTTTACTATGGAGGAGGGTACTAATGAAGAGAGGGCAGAGGATGAGGTGAAAGATGGTGAAC ATAGTAGAGAAGTTTCAGAGCTTAGTGTTATGGAAGAAATTGGAGTGAAATTAATGCTTAGAAAAGTGAATTTCTGGTTA TACTTCTTTATCTATCTTTTTGGTGCAACAATTGGTTTCGTATTTCTCAATAATTTGGGACAAATAGCTGAGTCCAGGGG TTGCTCTGCCACTTCATCTTTGGTGTCTTTGTCTTCATCTTTTGGGTTCTTCGGCCGTCTGATCCCGTCACTCATGGATT ACTTCTACAGGTAATGTATTAAACCCTAAACCTTAAACATTTCACATGCATGAGGTGTTTATGTTAAACTTTATATCTAT ATTAATTTATGTACATAAACTTTCATTAATTTGAACTAAAAATGATACATGTATATACAATACGTGACGTAATTTATGCG TATCATGTAACAAACTGCCGCTAAATGATATGTCAGAAGTATGTCGCAGAATATTGTATGTCGACCTATCATTACTCTCT ATATATATAAAGAGAGAAAGAAACACAACACAATATTTTGATGACAAGTTCATCTTAATATCTTAATATGAAGGAATCTA ATTCCTCAAACACCAACCAACCGGAACTAGTGCATTTACATTTTTCATTTAATGCATATAATGTTGATGCACAATATGTG TTGGTTGTCATGTGGTTGATCACCATTGATGAAGACAAACAAACTGCAACATTAAAAGCCACCCCGGCCTTTTATTGATA TGAGGCTACTAATAACTACTTTGTTTCTATTTTTTTCAGGGGAAAACGTACAATTTCAAGACCTGCCTCAGTGGTGGCAG TGATGATTCCAATTACAATTGCATTCTTCTTACTTCTCAATAAAACAGACATTGCCCTTTACACAAGCACTGCAGTAATT GGAGTGTGTACTGGAGCAATCACTTCCATAGCTGTTTCCACAACAACTGAGTTATTTGGAACCAAACATTTTTCAGTGAA TCATAATGTGGTCGTGGCCAACATCCCCATTGGTTCGTTTCTGTTTGGCTACTCTGCTGCAATTCTTTACAATAAGGAAG GGAATGAACATGGGAAGTGCATGGGCATGGAGTGCTACAGTAACACGTTTCTCATATGGGGCTCCTTTTGCTTCCTTGGA ACTGTCTTGGCTTTGATTCTTCATGCTAGGACACGCCAGTTTTATTCACAAAAACAATAGGCTACACATTTTAATTACTC TTCATATTAATTAGTTTATTTTCAACACGCAGTGGAGATTGTAACTTTATTAGGTAGAAGTTACTATTGTTCTTCAAATA ATGCTTTGTTGACACTTGTATCACACTTACACCTAGTGAATTTAATTAAGGAAGACAGACAAAGAATGTGAGACATATAA TAGATGATGTGATAGAAACATAAAAGAAAAATAGGAAGAGAAGGTAAGTGAAAATAAAATGAG
CDS sequence (LotjaGi6g1v0088600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTACTACACTTCAATGGCTAAGCCTTGTGGGTATTGTTTGGCTCCAAGCCATAAATGGGACAAATACCAATTT TCCTGCTTACTCTTCCCAGCTGAAGGAGCTTCTTTCTATTTCTCAAGTGCAGCTCAATAACCTTTCTTTTGCCTCTGATG CAGGGAAATTTCTTGGCTGGTTTTCTGGCCTTGCTTCTCTTTACCTCCCCCTCTGGCTTGTCCTCATAATCGGTTCGGTT CTTGGGTTAATCGGCTATGGAGTGCAATTTCTCTTTATAACTAACCACATTGCCTCTCTGTCTTATTGGCATGTTTTCTT GCTAACGTTTCTAGCTGGAAATAGTATTTGTTGGATTAACACAGTTTGCTATGTTGTTGCCATAAGAAACTTCCTATCTG ATAGCAAAGTTGCTGTGGGATTAACAACCAGTTACCAAGGATTAAGTGCAAAGATCTATACCAATATTGTTGAAGCTGTT TCTCCAGATAAAAAAGCTGTAAACTTTCTCTTATTGAACTCTCTAATACCAATTGTAGTTAGCCTAATAGTAGCTCCTTT TCTCAGAGAAATTGAAGTTACAAGCTCCAAGCACACAGGTGTTGGATTTGCTGTTATGTTTGTTATTACAATTGCCACTG GAATTTATGCTGTTATGAGCAGCTTGCAATTTGTCACAAGCAAACTATCCTCACTGGGAATCCTGATTGGTCTTATAGTT TCCCTTCTCTTCGCTCTATTAGTCCCACCTTCACTTAAGATCAAGAATCTAGCAGGGGCATGGCACAAAAATAGAGAAAG ACTTAGAGTCTACCATTTTACTATGGAGGAGGGTACTAATGAAGAGAGGGCAGAGGATGAGGTGAAAGATGGTGAACATA GTAGAGAAGTTTCAGAGCTTAGTGTTATGGAAGAAATTGGAGTGAAATTAATGCTTAGAAAAGTGAATTTCTGGTTATAC TTCTTTATCTATCTTTTTGGTGCAACAATTGGTTTCGTATTTCTCAATAATTTGGGACAAATAGCTGAGTCCAGGGGTTG CTCTGCCACTTCATCTTTGGTGTCTTTGTCTTCATCTTTTGGGTTCTTCGGCCGTCTGATCCCGTCACTCATGGATTACT TCTACAGGGGAAAACGTACAATTTCAAGACCTGCCTCAGTGGTGGCAGTGATGATTCCAATTACAATTGCATTCTTCTTA CTTCTCAATAAAACAGACATTGCCCTTTACACAAGCACTGCAGTAATTGGAGTGTGTACTGGAGCAATCACTTCCATAGC TGTTTCCACAACAACTGAGTTATTTGGAACCAAACATTTTTCAGTGAATCATAATGTGGTCGTGGCCAACATCCCCATTG GTTCGTTTCTGTTTGGCTACTCTGCTGCAATTCTTTACAATAAGGAAGGGAATGAACATGGGAAGTGCATGGGCATGGAG TGCTACAGTAACACGTTTCTCATATGGGGCTCCTTTTGCTTCCTTGGAACTGTCTTGGCTTTGATTCTTCATGCTAGGAC ACGCCAGTTTTATTCACAAAAACAATAG
Protein sequence (LotjaGi6g1v0088600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTTLQWLSLVGIVWLQAINGTNTNFPAYSSQLKELLSISQVQLNNLSFASDAGKFLGWFSGLASLYLPLWLVLIIGSV LGLIGYGVQFLFITNHIASLSYWHVFLLTFLAGNSICWINTVCYVVAIRNFLSDSKVAVGLTTSYQGLSAKIYTNIVEAV SPDKKAVNFLLLNSLIPIVVSLIVAPFLREIEVTSSKHTGVGFAVMFVITIATGIYAVMSSLQFVTSKLSSLGILIGLIV SLLFALLVPPSLKIKNLAGAWHKNRERLRVYHFTMEEGTNEERAEDEVKDGEHSREVSELSVMEEIGVKLMLRKVNFWLY FFIYLFGATIGFVFLNNLGQIAESRGCSATSSLVSLSSSFGFFGRLIPSLMDYFYRGKRTISRPASVVAVMIPITIAFFL LLNKTDIALYTSTAVIGVCTGAITSIAVSTTTELFGTKHFSVNHNVVVANIPIGSFLFGYSAAILYNKEGNEHGKCMGME CYSNTFLIWGSFCFLGTVLALILHARTRQFYSQKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 513 | 513 | 2.1E-241 | – | |
| PANTHER | 1 | 513 | 513 | 2.1E-241 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| CDD | 6 | 497 | 492 | 2.67285E-87 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| SUPERFAMILY | 7 | 509 | 503 | 1.31E-16 | ||
| Pfam | 7 | 249 | 243 | 1.5E-74 | ||
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 66 | 44 | - | – | |
| Phobius | 67 | 93 | 27 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 94 | 104 | 11 | - | – | |
| Phobius | 105 | 127 | 23 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 128 | 168 | 41 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 199 | 11 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 200 | 219 | 20 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| Phobius | 231 | 248 | 18 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 249 | 316 | 68 | - | – | |
| Gene3D | 303 | 511 | 209 | 2.6E-11 | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 317 | 336 | 20 | - | – | |
| Phobius | 337 | 347 | 11 | - | – | |
| Phobius | 348 | 368 | 21 | - | – | |
| TMHMM | 349 | 367 | 19 | - | – | |
| Phobius | 369 | 379 | 11 | - | – | |
| TMHMM | 380 | 402 | 23 | - | – | |
| Phobius | 380 | 401 | 22 | - | – | |
| Phobius | 402 | 406 | 5 | - | – | |
| TMHMM | 407 | 429 | 23 | - | – | |
| Phobius | 407 | 435 | 29 | - | – | |
| Phobius | 436 | 446 | 11 | - | – | |
| TMHMM | 442 | 464 | 23 | - | – | |
| Phobius | 447 | 466 | 20 | - | – | |
| Phobius | 467 | 485 | 19 | - | – | |
| Phobius | 486 | 505 | 20 | - | – | |
| TMHMM | 486 | 505 | 20 | - | – | |
| Phobius | 506 | 515 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0088600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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