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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0089700 |
| Transcript ID | LotjaGi6g1v0089700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G17950.1 myb domain protein 52; Swiss-Prot: sp|Q6R0C4|MYB52_ARATH Transcription factor MYB52; TrEMBL-Plants: tr|A0A151TS75|A0A151TS75_CAJCA Transcription factor MYB44; Found in the gene: LotjaGi6g1v0089700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:19114834..19116905) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAAGTGACTTGCCATCCACAACCCTAAACCAACCAACTCTTCCCCCTCCCTTATATATCTTGTTCAGGACTTGTCT CTGCTGTGCTTGATGTTCAAGATTTCTCTCAGCAAAATATCACCACCAAAATCCTCAGCCTCCATCCACACCTTAACAAA CCGCACCACTCTCTCTCCCATCCATCCCATGGAGGATTCTTCAGCAGGTGATGACACCAAGAACACTTGCCCCCGCGGTC ACTGGAGACCTGCCGAGGATGAAAAGCTTCGCCAACTCGTTGAACAATACGGTGCTCAGAACTGGAATTCAATTGCTGAG AAGCTCCAAGGAAGATCAGGTACATATAATTAAATTAGGTTTATCATATTTTGTAGTATTTAAAGGATTTAGATCTTATT CAGGCTTTGATTATCTTGAATTATTACTATTGCACCTAAAACCAACTTGGTTTCTTGAGCAAGTTTTCTTATTAGGAGTT ATATATTTAACATATGTATGGATTTTTTTTCATCTATTTTCTATATATTGTATAAAACTTATGTTTCCATGATGATGAAC TTCAATGGTAATTTTTTTTTGCAGGAAAAAGTTGCAGATTGAGGTGGTTCAACCAGCTTGATCCAAGAATTAACAGAAGG CCATTCACAGAAGAGGAAGAAGAGAGGCTACTTGCAGCTCACAGAGTTCATGGGAACAAGTGGGCCCTCATAGCAAGGCT CTTCCCAGGTAGAACTGATAATGCTGTGAAGAATCACTGGCATGTCATCATGGCAAGGAAGCAGAGGGAACAGTCCAAGT TATCTGGGAAGAGAAGCTTCCAAGACCTTTATGATGATTCCAACACTTCCATTCATCATTTCCCTGATCACAAGAGACTC AAATCTCATCAAGACCTTTTGTTCAGCACAAGAATTGGGTTAGAGAATGGAAGATTCTTTGACTTCAGGTCCCACATCGA GAAAGTTAGGAATAAGTTAGTTTCAGATACTCCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCATCTGTTCCAATAACCA CCTCAAACAGTTATCCTATTATGGATTCAGTTAGAAAATTAGGAACTTCCTCTGATGCTAATTATCTCTTGGAATGTTCC AGAAGCTCATCAGATAGATTTGTTTATAGAATTTGTCCAAATCCTACTACCACTACTTCATTCTCCCTTCCAAATTACAA GAGGGTTGTTCCAAATCCCTTTGGATGTTTAGGTTCTTCTGATGATCATGGAAGGATAGAGAGGGACTTGATGAGTTTCT GTGATAACTCATCCACATTGAGCAAGTTGAGAGCTTCGGCGGAGGAGAAACAGCAAGAAGATTATGAAGCTAGTGTTGAG CACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCCCTTCATCATCATAAATATGGATGAAAGTATTTAAGTA TTTAACTTCTTGTAGAATATGTCCACTACAGTTTAGCTTTCTAGTTGTCACTACCAAATAGCAAATTTAGTATTTATGTT GGCGCAGACACAAAGCTCTCACTATAATGCATGTATTATTATTTTTTTTCTCAGAATCAATTCTGAAATTTAGATGCTAC TCAAATTCACATGATGAAGCTTCACCACATAATTGATTCTGACTTTAGAATTAGTTGTAATTTTGAGGCCTTTCAATTCA GTTGCAAGAGTGCTGCCTCATTTTCTACAGGTTTAGGGAGTCAAGTGAAAAAATTGCCTACATTTTTGTTTTTAACTTTT TTTCCTTGTTTGGTTTGAGGGATAAAGCTTTGAGTGTGGATATCAAAATGAAGGCTATGGTCTTAGTGTGATGAACTTCA CATTTAATTTTCTTTGCGCGTGGCTTTGAATTCTATGGATATATAAGGTAAAGATCAGGTATTGGAAAATTTGCAGAGAT TGACTTAAATTTCATGCTTCTCTGTGCCAATATGTACTAATATGAAATCCTTAAGCTCTCACTGAGGACAGATTTTGTGG CAGATGCAACTGTCTTTTTTGTTATATTAGCATATATTGTTAGTAGTTGGAGGGTTGCAACTTGTAATTGTG
CDS sequence (LotjaGi6g1v0089700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAGATTTCTCTCAGCAAAATATCACCACCAAAATCCTCAGCCTCCATCCACACCTTAACAAACCGCACCACTCT CTCTCCCATCCATCCCATGGAGGATTCTTCAGCAGGTGATGACACCAAGAACACTTGCCCCCGCGGTCACTGGAGACCTG CCGAGGATGAAAAGCTTCGCCAACTCGTTGAACAATACGGTGCTCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGA AGATCAGGAAAAAGTTGCAGATTGAGGTGGTTCAACCAGCTTGATCCAAGAATTAACAGAAGGCCATTCACAGAAGAGGA AGAAGAGAGGCTACTTGCAGCTCACAGAGTTCATGGGAACAAGTGGGCCCTCATAGCAAGGCTCTTCCCAGGTAGAACTG ATAATGCTGTGAAGAATCACTGGCATGTCATCATGGCAAGGAAGCAGAGGGAACAGTCCAAGTTATCTGGGAAGAGAAGC TTCCAAGACCTTTATGATGATTCCAACACTTCCATTCATCATTTCCCTGATCACAAGAGACTCAAATCTCATCAAGACCT TTTGTTCAGCACAAGAATTGGGTTAGAGAATGGAAGATTCTTTGACTTCAGGTCCCACATCGAGAAAGTTAGGAATAAGT TAGTTTCAGATACTCCTTCTAGTTCTCTTGCCTCTTGGAATTTTGCATCTGTTCCAATAACCACCTCAAACAGTTATCCT ATTATGGATTCAGTTAGAAAATTAGGAACTTCCTCTGATGCTAATTATCTCTTGGAATGTTCCAGAAGCTCATCAGATAG ATTTGTTTATAGAATTTGTCCAAATCCTACTACCACTACTTCATTCTCCCTTCCAAATTACAAGAGGGTTGTTCCAAATC CCTTTGGATGTTTAGGTTCTTCTGATGATCATGGAAGGATAGAGAGGGACTTGATGAGTTTCTGTGATAACTCATCCACA TTGAGCAAGTTGAGAGCTTCGGCGGAGGAGAAACAGCAAGAAGATTATGAAGCTAGTGTTGAGCACAAAGAAGTTCCTTT CATTGATTTTCTTGGTGTGGGTGTCCCTTCATCATCATAA
Protein sequence (LotjaGi6g1v0089700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKISLSKISPPKSSASIHTLTNRTTLSPIHPMEDSSAGDDTKNTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQG RSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRVHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLSGKRS FQDLYDDSNTSIHHFPDHKRLKSHQDLLFSTRIGLENGRFFDFRSHIEKVRNKLVSDTPSSSLASWNFASVPITTSNSYP IMDSVRKLGTSSDANYLLECSRSSSDRFVYRICPNPTTTTSFSLPNYKRVVPNPFGCLGSSDDHGRIERDLMSFCDNSST LSKLRASAEEKQQEDYEASVEHKEVPFIDFLGVGVPSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 16 | 16 | - | – | |
| MobiDBLite | 8 | 32 | 25 | - | – | |
| PANTHER | 37 | 188 | 152 | 3.5E-90 | ||
| PANTHER | 37 | 188 | 152 | 3.5E-90 | – | |
| ProSiteProfiles | 43 | 94 | 52 | 19.586 | ||
| SUPERFAMILY | 47 | 141 | 95 | 1.31E-29 | ||
| SMART | 47 | 96 | 50 | 8.4E-15 | ||
| Gene3D | 48 | 100 | 53 | 3.7E-22 | – | |
| Pfam | 51 | 111 | 61 | 2.6E-17 | – | |
| CDD | 51 | 92 | 42 | 1.5763E-14 | ||
| ProSiteProfiles | 95 | 149 | 55 | 28.249 | ||
| SMART | 99 | 147 | 49 | 6.4E-16 | ||
| Gene3D | 102 | 174 | 73 | 8.9E-19 | – | |
| CDD | 111 | 142 | 32 | 6.50869E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0089700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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