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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0093700 |
| Transcript ID | LotjaGi6g1v0093700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ4|A0PBZ4_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi6g1v0093700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20311912..20314250) extracted from Lotus japonicus Gifu genome v1.2.
TTAATTTGTATTATTCTTAAGATGATGGAAGCAAATCAAGCAATCACTAACCAAAGCCAAAATGGTTCCTTCTTCTGCAC TACTACTGCTAAAGGCGCTGTTACTGTTAGTACTACTGATCCCTTGAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGA GCCACTTGGACGAGGTGAAGCACATGGTGGAGGAGTACCGCAAGCCGGTTGTCAGGCTCGGCGGAGAGACGCTGACGATA GCTCAGGTAGCTGCCATTGCCACCGCCACCGCCGCTGAAGGAGTGAGCGTTGAGCTGTGCGAGACAGCTAGAGCCGGCGT TAAGGCGAGCAGTGACTGGGTCAAGAATAGCAGCACTGACAGTAATGGTGTCACCACCGGCTTCGGTGCCACCTCCCACC GCAGAACCAAACAAGGCAATGCTTTGCAGCAAGAGCTAATCAGGTTTTTGAACGTTGGAATTTTTGGCAATGGTACTGAG TCATCCCACACATTGCCACAATCTGCAACTAGAGCTTCCATGCTAGTGAGGATCAACACTCTTCTTCAAGGATATTCAGG CATTAGATTTGAAATCTTAGAAACCATCACTCAGCTCCTCAACAACAACATCACCCCATGTTTGCCGCTTCGTGGCACCG TCACGGCTTCCGGTGATCTAGTGCCTCTTTCTTACATTGCTGGTTTGCTCACTGGCCGACCAAACTCCAAAGCTGTTGGA CCTTCTGGAGAGAAACTCAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCCGGTTTCTTTGAATTGCAACCGAA GGAGGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTGGCCTCTATTGTTCTCTTTGAGGCTAATATACTGG CAGTGTTGTCTGAGGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTCACCGACCATTTGACCCAT AAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGGAGCTCCTACATCAAAGC AGCAAAGAAGTCGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGACCGATATGCACTCAGAACTTCACCTCAATGGC TCGGTCCCCTAATCGAAGTGATTCGATTCTCGACAAAGTCAATCGAGGGAGAGATTAACTCCGTGAACGACAACCCTTTG ATCGACGTTTCGAGAAACAAGGCTTTGCATGGAGGCAATTTCCAAGGAACCCCTATTGGAGTTTCCATGGACAACACGCG TCTCGCACTTGCCTCAATTGGAAAGCTCATGTTTGCCCAGTTCACTGAGCTTGTGGATGATCATTACAACAATGGGTTGC CATCAAATCTCACTGCAAGTAGAAACCCCAGCTTGGATTATGGTCTCAAGGGAGCTGAAATCACCATGGCTTCTTATTGC TCAGAACTCCAATATCTTGCGAATCCGGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTT GGGTTTGATTTCTTCTAGAAAAACATACGAAGCCATTGAGATCCTTAAACTCATGTCCTCCACATTCTTGATTGCACTTT GCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAGATACTCGGTTAAGAACACGGTAAGTCAGGTAGCCAAGAGG ACTCTTATCACAGATGTCAATGGAGAACTCCATCCTTCTAGATTTTGTGAAAAAGATTTGTTGAAAGTGGTTGATAGGGA GGCTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAGCTAAGGCAAGTGTTGGTGGATC ATGCATTAGTAAGCGAAGAAAATGAGAAGAACTCAAGCACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTA AAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAATCCAAAAATTTCAAACAAAATCAA TGATTGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAGGAGTTGGGAACAGAATTGCTAACTGGAGAAAAGGTTAGAT CACCAGGTGAGGAATGTGATAAAGTGTTCACAGCAATATGTCAGGGTAAAATTATTGATCCTCTTATAAAATGTCTTGGG GAGTGGAACGGTGCCCCAATTCCAATTTGTTAATTTTACTAGTTGTTTTAGACATGACTTATTCATATTTATGTAAGTGT ATCGATACCCATCATTTTCAAATAAAATTCTCTGATATAGAATTGTTAAATAAACCTGCAATGCACTGTTATTGATTCTT CATATGATTTGCAGCCTAA
CDS sequence (LotjaGi6g1v0093700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAGCAAATCAAGCAATCACTAACCAAAGCCAAAATGGTTCCTTCTTCTGCACTACTACTGCTAAAGGCGCTGT TACTGTTAGTACTACTGATCCCTTGAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGAGCCACTTGGACGAGGTGAAGC ACATGGTGGAGGAGTACCGCAAGCCGGTTGTCAGGCTCGGCGGAGAGACGCTGACGATAGCTCAGGTAGCTGCCATTGCC ACCGCCACCGCCGCTGAAGGAGTGAGCGTTGAGCTGTGCGAGACAGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGT CAAGAATAGCAGCACTGACAGTAATGGTGTCACCACCGGCTTCGGTGCCACCTCCCACCGCAGAACCAAACAAGGCAATG CTTTGCAGCAAGAGCTAATCAGGTTTTTGAACGTTGGAATTTTTGGCAATGGTACTGAGTCATCCCACACATTGCCACAA TCTGCAACTAGAGCTTCCATGCTAGTGAGGATCAACACTCTTCTTCAAGGATATTCAGGCATTAGATTTGAAATCTTAGA AACCATCACTCAGCTCCTCAACAACAACATCACCCCATGTTTGCCGCTTCGTGGCACCGTCACGGCTTCCGGTGATCTAG TGCCTCTTTCTTACATTGCTGGTTTGCTCACTGGCCGACCAAACTCCAAAGCTGTTGGACCTTCTGGAGAGAAACTCAAT GCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCCGGTTTCTTTGAATTGCAACCGAAGGAGGGGCTTGCCCTTGTTAA TGGCACTGCTGTTGGTTCTGGCTTGGCCTCTATTGTTCTCTTTGAGGCTAATATACTGGCAGTGTTGTCTGAGGTTCTAT CAGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTCACCGACCATTTGACCCATAAGTTAAAGCACCACCCTGGT CAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGGAGCTCCTACATCAAAGCAGCAAAGAAGTCGCACGAGAT GGATCCCTTGCAAAAGCCAAAACAAGACCGATATGCACTCAGAACTTCACCTCAATGGCTCGGTCCCCTAATCGAAGTGA TTCGATTCTCGACAAAGTCAATCGAGGGAGAGATTAACTCCGTGAACGACAACCCTTTGATCGACGTTTCGAGAAACAAG GCTTTGCATGGAGGCAATTTCCAAGGAACCCCTATTGGAGTTTCCATGGACAACACGCGTCTCGCACTTGCCTCAATTGG AAAGCTCATGTTTGCCCAGTTCACTGAGCTTGTGGATGATCATTACAACAATGGGTTGCCATCAAATCTCACTGCAAGTA GAAACCCCAGCTTGGATTATGGTCTCAAGGGAGCTGAAATCACCATGGCTTCTTATTGCTCAGAACTCCAATATCTTGCG AATCCGGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAA AACATACGAAGCCATTGAGATCCTTAAACTCATGTCCTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGC ATTTGGAGGAGAACTTGAGATACTCGGTTAAGAACACGGTAAGTCAGGTAGCCAAGAGGACTCTTATCACAGATGTCAAT GGAGAACTCCATCCTTCTAGATTTTGTGAAAAAGATTTGTTGAAAGTGGTTGATAGGGAGGCTGTATTTGCCTATATTGA TGACCCCTGCAGTGCTACATACCCATTGATGCAAAAGCTAAGGCAAGTGTTGGTGGATCATGCATTAGTAAGCGAAGAAA ATGAGAAGAACTCAAGCACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTAAAGAGTCTCTTGCCAAAGGAG GTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAATCCAAAAATTTCAAACAAAATCAATGATTGCAGATCTTACCCACT GTACAAGTTTGTGAGGGAGGAGTTGGGAACAGAATTGCTAACTGGAGAAAAGGTTAGATCACCAGGTGAGGAATGTGATA AAGTGTTCACAGCAATATGTCAGGGTAAAATTATTGATCCTCTTATAAAATGTCTTGGGGAGTGGAACGGTGCCCCAATT CCAATTTCCTAA
Protein sequence (LotjaGi6g1v0093700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEANQAITNQSQNGSFFCTTTAKGAVTVSTTDPLNWGVAAESMKGSHLDEVKHMVEEYRKPVVRLGGETLTIAQVAAIA TATAAEGVSVELCETARAGVKASSDWVKNSSTDSNGVTTGFGATSHRRTKQGNALQQELIRFLNVGIFGNGTESSHTLPQ SATRASMLVRINTLLQGYSGIRFEILETITQLLNNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEKLN AKEAFQLAGINSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPG QIEAAAIMEHILDGSSYIKAAKKSHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEGEINSVNDNPLIDVSRNK ALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEITMASYCSELQYLA NPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLRYSVKNTVSQVAKRTLITDVN GELHPSRFCEKDLLKVVDREAVFAYIDDPCSATYPLMQKLRQVLVDHALVSEENEKNSSTSIFQKIATFEDELKSLLPKE VESARAAYESGNPKISNKINDCRSYPLYKFVREELGTELLTGEKVRSPGEECDKVFTAICQGKIIDPLIKCLGEWNGAPI PIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 722 | 705 | 0.0 | – | |
| PANTHER | 18 | 722 | 705 | 0.0 | ||
| Gene3D | 32 | 269 | 238 | 2.2E-89 | ||
| SUPERFAMILY | 33 | 722 | 690 | 5.96E-253 | ||
| TIGRFAM | 33 | 712 | 680 | 0.0 | ||
| Pfam | 71 | 537 | 467 | 8.1E-147 | ||
| CDD | 86 | 533 | 448 | 0.0 | ||
| ProSitePatterns | 205 | 221 | 17 | - | ||
| Gene3D | 270 | 712 | 443 | 5.5E-217 | – | |
| Gene3D | 536 | 650 | 115 | 5.5E-217 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi6g1v0093700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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