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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0094100 |
| Transcript ID | LotjaGi6g1v0094100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9QJT6|GLYCO_SHRV Glycoprotein; TrEMBL-Plants: tr|Q949K8|Q949K8_CICAR Gag polyprotein; Found in the gene: LotjaGi6g1v0094100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20373662..20384074) extracted from Lotus japonicus Gifu genome v1.2.
TTTGACTTAACAGAACATGGTGAACACTAACCAACTAGCGGAGATGATGGCCACTATGGCCCAAGTTGTGACTGCCCAAG CAAATGAAAATGCTTTGAGACGTGCGGCTGAGGAAGCACGTAATCAGCATCAGCGTCAGAGGGAAATAACTCTGGATCAG AATAAGGGATTAAATGATTTCAGGAGACAAGATCCTCCTAAGTTCTCGGGTACGGTGGAACTGATCCTGATAAAGCGAAT CTTTGGATCCAAGAGATTGAGAAGATTTTCGGTGTACTGCAGACTGCTGAAGGTGCCAAGGTTGGCATGGCTACTTATCT GCTACTTGGTGATGCTGAGTACTGGTGGAGAGGCACCAGGGGAATTATGGAAGCCAATAACGAGGAGATTAACTGGAATT CCTTTCGAACTGCATTCCTGGAAAAGTATTTTCCAACTAGTGCTCGGGATGAGCGAGAGGCACAATTTCTGACACTTCGT CAAGGAAGCATGTCTATACCTGAGTATGCTTCTAAACTGGAGTCTTTGGCCAAGCATTTCCAATTCTTCAACGATCATGT TGATGAGCGCTACATGTGTAAGCGTTTCGTCAATGGACTGAGTATGCTTCTAAACTGGAGTCTTTGGCCAAGCATTTCCA ATTCTTCAATATTTATATTTATTGAAGGGTAGTAAAAAATGTAAATTTTTTATAAGAGCAATTTACTAGGACAAGTTGTT GTAACTAATGGATGCCGATCATAGTGGTTGTAACAAAGTACTTATAATATTTATATTTATTATTATTTTTTCATAAATAT TTTCATTTTTGTGAAATTCTTTTATCATTTTTATTTATAAAGGTTTGTTTTTATCCTTTATTTAAGAGGGGGCTCCATTT ACTCTAGGAGTAAGTCCCTAAAGCTACTCCCAATCTTAGCCTTTTATTATTTTAAAATCTAAAGGAGAATATTCATCTAT GATTTCCCTCACGTGATCTCCAATGCACGGGCAGGAACATGACGAATTTTTCTGGCTTGAAGCAACATCCTCGATCTACT TCGCCGGCCGGGGAGCCCTTCCACCGACACCAACAGTGGCACTCGCTACTACTCGCTTATTTCTTCAATGCTTCCGGCAT TGGAAAGGTACCTTCGATTCCCTCACAATTTCACCCTATTATTCCCATGACGAATTAAGGTGGTATCACCACGCGATTTT GCGGGAACATGGTGAGGTGATTCTTTCTGCTGGTGCGATTGGTAGTCATCAACTCCTTCTTCTCACTAGGATTGGTCCAA GGCCTTACCTTTCTTCATGAGGATTCCGGTGGCTCATGGAATCACTATTCTCCTTTCACTTCCACTGGAGTATTCTCTCA TACAGGTGGTGAGCACCATATGGCATTACCACGGAGGATGTGTCGTGGGCAGGATGGTTGATCCTTAGCTTAGGGTCATT GGAATTAATTCACTTCGGGTTGTGGATGGTTCAGTGTTTAGTGTTTCGCCAGGAACTAATCCTCAGGCCACCATCATGAT GCTTGGAAGGTGAGTTTAGCTTGTCTTGTTAATGATTACCCTAACAGTCTCACTTCACTTTCAGTATAATGATTATGTTT TAAGCAAAATAATGCATACCGATTAAGCCATGTTATGTTATTTTGGCAGGTATTTTGGGCTGAAGATAAACAGAGAAAGG AAAAGTTATCAATGATTCTTCTCCCTCCTCCTCTACTTGGCAATTGTACAAATGTTATTAGTTACCCTTTGCTTTTTTTG AATTGTAGTATATTGATTCTTCATGTTTAATTTGGATCCTTGATAGATACTGAGAAGAATGTAAAAGAATCCTCAATCTA GAAGATAACAGTGTAACATAGAGGGGTAGATTTATAAGGACTATTTTACATAAATTTTTATTATATTGGATTCATACCTG AATAATGTGAAGTTGCCAGCAATCAAATCATTACCAAGTTTTGTGCCTTAATGCTCTATATTTTTGTCCCTTCTATATGT TGTGTTCAATGTTCATAGTGATTGCGGTATTTCTTGTGTTCTGGTATTGAACATTTGTGTTGTGGGATATGACATTATGT GTTTTATCCTTCAATAACATGTAACAAAGAAAGCACTTTGCTAGAGTTTAATACAACTTCATTTTGCTTATCAAGTACTT GAATGCATTACTCTAGATTTACTGTTTAACACTTTTTGGATTTGATTCCTCTTGGACGGGGAATTTACTTTAAAGGGATT AATGAGAAATTGTAATTATTGGTACCCAAAAAATCATGGCAGTGCTTTCTTTCAGAACTGATTAACCCCCTATATTATAC GTTTTGTTTGGCCATTGATTAACCCCTTAAAACACAGGTATCTACAAGTGGTCGAAATTGTTAGTAAAGGACCTAGCTGC TGCAATTTGGACTTACTCATGGAGTAAATTGAGTCCTCCTCTTATATGATTAGTTTCTCATGATTTTTTTCTCAAAAACT TCACAACTTTTCAGTGGTTGGCTGGTGCTCTTTTTGAGTTTTTGTTTCAAATTGTTGTTTTATTAACAAGTGAATCTTTA TTTTCTGATGCAATTCAAATGCGTTGACCTTTCTATAATTTATTTTCAATGTGTACATCCAAACGCAAATAACTTATCAA ACTTAAGCACTTATGGCATAAGCTCTTACACGGTAAGGTAAGTGTTTATTGAATAATTAAGTGCAGAATAAGTTATATAT CCAAATTATCATTTCCAAGGTATGGGACTATCTCCTCTGTGAAGTGTAAATCTCATAATAAAATCTGAATTATATTTTAG CTTGGCTTCACATATACTTGGCGACGTACATCCCTATTCTTTTGGGTTAGTTTTTTTAGCGAAATTTTATTTTTTTATAT ATAAGACTCAAATAAGAAACTATACATATTAGCCTAAAATATTTTTAGTACCATATACAAAATTTATTATTAAGATAATA TTTATTGAGAAATACGATACCATAAAATTATATAATTATCGACTTATATTTAAATACATTTAAAAAAAATCTATATTTAA ATATAATTTTATTAACTTATTTATGAATTGACTGTCTACAAAAGTTTTAGCAAGTTCATCTATTTAGGGATAAATTTATA ATTTATTTAAGGCCAAATATGTTTTCAGTCCTTAATAATTAAAGAGAAATCTAAATGAATTCTTGCACAAAAGATTTTTA ATAATAGATCCCTTTAAATAAATTGTCCACGTGTCATTTGATTGGTTTTTCAAATCAATGGCATTAATGGTCAATCAATG TAAATCATGTCGTTTTGAGCTCTCAAGGTACGAGTGATCAATGCAAATCTTGTCATTTATGATTCTCGAGACGCAATAGT TTGGGGATGGATTTCAAACGCAACGACGCGTGTGGGTTGGAGCTCACCCGCTGACTATTTGACAACAATGCCAGCAGTGG GTCATGACATTTATGGTGAATTTCACACACAACAGTTATAAAGGCAGATGAACTCAAGGCAAAGTTGGAATAAGTGTTTT CCTTCTCTTGTATTATGGTTTCATCGTATTGTGGACTAGCTAGGGCGCCACGTGGGGATAGTGTTGCCCAATTTTTCTTT TCACCAAAGATTCTCTGATTTTTCTTAGAAAAGAATTCGTATGCCACACTTCAAAAAATAAAATCAAACTTACTTAAAAA AATTAGGACTAATTTAACTGTTAACCTTTTAAAATAAAGGTTTTATGGTGCGACAACAAATTATCCAAATTTCCAAATTG CTACATAAGAAATGAGTGTGAACATGTCTTTTACCAAAAAGTTGTTAAATAGTCGCACATGTACAAGTCCACTGAACTCA ACTCTGTGTCATCATCTAAAACGCTCAACTCTGTAAGCTCTAAAAATACATAAAGACCTATCATTTTCATTTTTTAAAAA TGGGTAGCAGCAGGTCATGGTTGAGCCTCACCACGTAGCGCAACTGGAGCTTCCGCCACTCCTTCTCCTCCACCGGCCTC AAATCCGGAACCATCGATCTCAGCGGCAGCACCTTCATGCACTGCTGGGTCCCCAAATCGCACAACCCTTCCAAGCCATC CCTTCTCCTCATCCACGACATCAGAGAAAACACAATGTGGCACTGCTGGGCAACTTCAATCTCTTCATCCACAATCTGCT CTTCTTCGGTGACTCCCACTCGACCCGACCCAATAGGTCCAAGCGCTTCCAGGCCGAGTGCGTCATAGTTGTCGTCGAAG CTCACGGCGTCCAGAAGGTCAACGTGGTCGGGTTCAGCTACGGCGGGTTCATGGCAAACAACATGGCGGCGGCGTTCCCG GAGGGCGTGGAGAAGGTGGTGGTCATATGTGTCGTTGTGTCGTTGGAGTATAGAGACATGAAGGAATGGATGTTTCAGGT GAAAACTGTTGACGAGGCGGTTGAGGTCTTGACGCTGGAGATAGTGAAGCAGCTGGTGCAGCTCACGTTCGCCAAACCCA TCAAAGTCTTGCCCAATTGATTTCTCAATGATTTCATTGAAGTAAGTGGTAGTGGTGGTCCTTTAATTTCTCTCAATATT TTTTACATTTTTCTTCTTTTTTATCACCAAAATTATTTTCTAATAATTTCTATCATAATCACTTTGACGAACTTACTACT AGGGTCCAAAAAGAAATTTATCACTTCTCCGGCGTCTTACCTTAAGTATAATATTTTAGCATCAATTTATCATTCTTCAT ATAAATTGATAAGCATAATATATTACTATGCCTTAAGAATTCATATGAACATGTCTATATATGCTTAAGAAAAGTTTTGA GAGCTCCTTTGTGACGGAGAGGATTGTGAAATTGGAATTATGCGGGAGAGAAGGAATTGTGTGATTACATTTATGTAGGG GAGGAGATTAGAGGACTTACTAATGAGGTACAAAAGGGGATTCATCTAGACGGCGATGCCACCGATGGGCTGAGTTGTTT CTCGCGTGTCTCTCTTTGGATTTCGCCAAACTACTTGTGTCATCCTAGCGTTACCCTCTCAGTCGGCCGAAAACTCAAAC TACTATCATCATCCTAATGTTATCCTCTCGGTCAACCGAAAACTCAACTACTTGCATCATCCTAACGTTACTCTCTCCGT CGGGCGAAAACCCAAACTACTTGCATCATCTTAACGTTACCCTCTCAGTCGGCAAAAAACGCAAACTACTTGTGTCATCC TAACGTTACAATCTCGGTCAGCCGAAAACCCGTAACAATCCATCGCTCATAAAAGCTTCTCTCTAACTAGACTTGAATGT GTCTATCAATTCTAGAATAATATCATGCATATATAGTTATAGTCTACTTATTTTTTACCTTTTTATCTTGTCTACCCTTA TGTGAATATCACAAACATGGAATTACCCTTTTAGTGAAACTCTCTGAAGTTGGCCTTATTCCCTTGCAGGTGATGTGTGC AGAATATCGGCAAGAGAAGAAAGAATTAATCCAAGCACTGCATAAGGATAGAAAATTGTCTAATCTTGCTAAGATAACCC AGGTTTATTTATTGCTTCCTGAATTTTTTTATTGAGTTAATTTTACCACATCTGCATTCTTGTACTCTAACTTTTCAATG ATGCAACCTATGCAAATTATATGGGGACATGCCCCCGCATCTCCATTCTTGTACTCTACCAATATATATACTAATACATC TAAAACGATAAAAAATCTTGGGGGGTGGGGGGTGGGGGAATTGCCCCCACATCTGCTTGTCTTCCATTTGAGAAACAGTA ATGATATATACACACCTCATTTTTAAAACACTTCATTTTCACCTCTTTTTGTTTCTATCTCTCTCCTCTTACCATTTATC ACATCTCATACTTTCTCTCTCTTATTTTTCCTTTTCTTCCTATCTATCTCATCATTCCACCTCTTCCACCTCAAAAGAGA GGTGTGTAAGTAACATTACTCTTTGAGAAAGAAAAGAAAAAAAAGAACTATGCACAAAGAAAAAAAAATAAGAATTGGGT GCGGTTTTGAGAGGGAAGAGAATGAAGATAAAGAAACTCTTTTCCGGAATTACTGATTTCTGGAGAAGTGGGAGTGAAGT CTATTTCGTTATAACTAAGGATGTTTCGGGGGGGGGGGGGAGTTTAGGATGTGTTATTAGTAATTATTAAAATAATGCGT CTTATCCGAATTTCAACATGAGCAACCTTACTTTTCTTCTGTCCCCTTAGTGATGAATAGAATAACTGGTAAAATATTTC GAGACAGAGGAATAAATGATCTGCACTTAATTAAAACAGATATGTTCTCAACTACTCCCTCCATTCCTTTTTAAGTGTCG TTTTAGAACAATTTTTTTTCCTATTTAACTGTCGTTTTGATGTTTTAGGTTCCATTTTGTCAATTATACCCTTACTTTTT CAATAACTCCACTTCACCTTTTTCATAAAATTCTTCTTTCTTAATAACTATGAAGACCTTTATGACTTTATGATTGGGTG AGAGTGGTAGGTGGTTTAATGACATGAGAGAGTGACAAAAAAAAACTAACAATCCACTATCTTGGTTGGAGAAATTTATA ACTTTATGATTGAGATGTGAGAGGGTAGAATGGGAAAAACAACTCTAATAATCCACTATCTTGGTTGAAGAGCTTTATGC TAAAACGACACTAAAAAAATGAAGGGAGGGAGTATATCGTTGAAAAAGTTAGAAAAAGAGAAGAAATTAAAACTCAGCTT TTAGAATAAAGTTGTATTCTTGACCAAAAAGTAAAAAGGAATAAAGTTGTGATGATAAATTAGTGGCGCACTCTCAGTGT AACACCCCAACTTTTGGGGGTCACAATTAGTAACTTATTAAATAAAATGAAATGATTTTACAAAAGGATTTACAAATAAG GGTCTATTTTTTTTTCATTTGTTTTCTAAAACATTTCCAAAACCTGATATGCATATACTTGCCCAAACCCATACATCCGG CCTTAACAAGGCAAGCACTCGTGAGTGACGACGGATTTTCAATACATGTAATATACAATAACGTAATGCCTTAACAGACA ACAAGGTTCAGAATGCGATAACACCCTAAGTCCAATATACTTCCTACAATCCCCGCACCGGAGAGTTGCAGAAGAGCAAT GCATCAGAACCTACCCAAAACCAAAGTAAGTTATACAACCATCCCTATATGCTTTAACCAGTAACAGTAAGCTTCTCTAC CCAAGGCTCTAACCTTACATCTAACTATTACTTCTATCAGTCTTCGTTTAATCTACTCACTACAAGAAGTCTTCCCGTAA AACAATCCAATCACCTCCTGGCAGCGATCAACAGCTACTCACAGCAACACCTATTAGGGCCTGGCAGTTTGCCGACCGCC CATACACAAACAAAGCAAACAAGGCAAGAAAGGGTCAACTTCCTAGAGTAATGTAATATAAGTCCTAACGAGATTCAACA TATTTATAAGCAGCGTATAATAATGATTAAGGACGATGTGTATCCAACATTATCATCTGAACGTCAATCCCTCAATCCAT CGCTCGTCGCCTACGCATAGGTGTATCTTCATTTCCGTGCCAAGGCGACGCCACGTGTTACTAATGTAATTGCACGACTG AGGAGCAAATCAACTAACGCGATTAAGGTCTACGTTCTATAATCAATCAACAAATAATATGTTGAGGGTCTAACCTCTAA ATCAAATAATAGCGAACGAGATTAAGGACAATCCTCCTAATCCAATAACGAATGGTATGATCAAGGTTCAACCTCTTTAA TCAACCAATATGCAATATGATTAAGGTCCAATCACTTTAATCAGGTAGTAAATAATATGATTAAGGACAAGCCTCTTAAT CAAGTGGGAAATAATAGGATTAAGGACAAGCCCCTTAATCAAAGGATAATTAATAGGATTAATTAATGGGATTAAGGACA AGCCACTTAATCCGAGAATAATTAATATAAGGTTCAATCCATTAACCAAAGTGGAATCCGATCTTCCGATCATCTCCCTT CAAGTGATGCATGCATGCAAATGCTAGTAACAACGATTCGTCCTTGCCCGGATACGTGTCTAGCTATGGTTCATTGCCTC TATCGTTTTTGCCTAAGGTAAACGTCGGTTCATAGGTCAATTGCTCCTCAAGCAAGGAACTATCTCCTGTACTTAGTGGA TGCTCTAATCATAACGACTTATCCTCTTGAGGTCCGCAACTGGAACACTTATCTTTCCTCGAACATCGGATCGCCGACCC TCCCCGTTTCAAACTCATTTCATATCCTAAGTTTTCCTCAAAAGGGGTTATCTTTATCATTCGAAGTGTTCTATCTTGAG TTAATTCATTATGGAATTTATTCTCAAAATCGAAGTCTTATGCATTCATTTATTTTGAAATCTAATAAGTCAAAGGATTC CTATTATCCCCAAGTCCTCTTTCAGCAGTAATTCAGTCCTTCCGTCAGATCCTACTTGCGAACTCTCATAACACTCCGCA TTCACAGTCAATATAATCATAAGATTTTGACATAATACAATGTTTATGCACTTACACAATTTAAAGGAATAGAACATGTC TGTCCACTAGAAAGCAATAAGACAACATCACAATTAACAGCCGATTCTTCGACACCTAAGCATAATAGCTAATAACTAGG AGAGTTGCCCTTACCTTGGGTTATTCTCCTCTATCCTGAAACTTCACAGCTTGTTCTGAATCTTCCTTCCTTAGCTCAAC ACGATCCAAACCTTAAGCAAAATATTCATGCTTAGTCGCTAAGAAACAATTCGATTTAAAAATGCTCACTAACGTCGGAA AAAGCTTCCTAAACTTCAGAGCTAGACACGTAGGCACGAATGGAAGAGTTACCCCAAATGGGTGAGTTTGACTTTACTCA AGTTTCACACATAAGCACTTAGCACATAATAAAGTAAGGTTCTGACTCAATCTTAAAACACAAATCATATCATCATATTC ATGGAATAAACCTAGTCATGTTCCTAGTACATGCTTAACCATTTAGCTTGCCTAGAACATTAGTAAACACTTGGACACAT TTCACATATTCAAGTTTAGACTCAACCCAACAAATAACCAAATAATAGCAACTCATTCTAGCATATAATTTCATCTTCAT TTTTACGCATGCCATCACCGAAACATGGTAAACAACAACAATAAGTAGCAACAACAAAAGAACGACAACAGTTACAGCGA AACAGCAACAAAAACAGTAATTACAGAAGAACAGCAGCAGCAATTACAGCAAAAATAGAAACAGCGACAGCAACAATAAA AAAAACAGAACAGCAACAGCAGCACTTGAAACATAACAGAAACAGCAGCAGTTAAAACAGAACAGAAACAGCAGCAGTTA AAACAGAACAGAAACAGCAGAAATTAAAACAGCAAAGTCTCATTTCCTTTCTCATTAATATAAAATTCATGCAACTTGAT CATGCTTCAAACCTGAACGGGCCTATAATTTTTCTCAAAGCTTCACCTCATTTTTAAATCACCATGCTTATAGTTGAATC TAAATTTATCATCACGCATTCATTTAGGCCATAAAATGCACTTACTTAAGAAACAAGTAGCACTTAGCATACCTAATCAT TTAAACACAAAATCATCCTCAAGCTTACTCCAAAACATATCCTAAAAACATGCATCAATTGATTCAATTCTAATCTTTAA AAGAGGGATTTTCCTCCCCTCAACACACAAGCAAGCTCGCGGCCCCCCCTCCAAAAATAGGGTAATCCAACTTTTCTTTT GAAACCAATTAATTCTTAGGCACATTTATACCCTAACTAAGGTAGGAAAACCATCCAAACACTCATACAACTTCATTTGT GAATTAACATTTTTTCCATGCCCAATTGAAACCTAAAAATCCAAAGTTGATGTTTTCTCAAAATTGATTGCACATAGCTC ATTCTTAGACATCTACTAACAACTAACGTGAATACATTTAGCATGGGTATGACTCTAACATAATTCAAGTTAACATTTGA GCCAAAATGGGTTTTTTAGAGCAAATTCATCACAATCATCAACAACTTCAATCACATTTGCAAATAAGGTACCAATATGA TCATTAGAGCGTGCATAGAAGCTAAATGAAACCAGAATTTAAGCTAAACATGCCTCAAACTCAAAAACACGAAATTAGGG TTCAAAAGCTTGATGAAAAATAGACTCCAATAGATGAAATGGAAGCTAAGAGAGTGAAGAGGAGGTTGTTACCTTTCAAA GCCCTCAAGAATCACAAGATTTGAGCAAGGAATGAGCAAGTTGTGAGCAAATTCTTCTCCCTTTCTTTCTCTCGAGGAAC CCACGGCCAAGAGGAGAAAATGAGAAAGAAAATTTGATTTTCTCCTTTTATAGGAGAGAGGAAATGAGAAAAAGAAATAT TTATCGAGTTCGG
CDS sequence (LotjaGi6g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTTATCTGCTACTTGGTGATGCTGAGTACTGGTGGAGAGGCACCAGGGGAATTATGGAAGCCAATAACGAGGA GATTAACTGGAATTCCTTTCGAACTGCATTCCTGGAAAAGTATTTTCCAACTAGTGCTCGGGATGAGCGAGAGGCACAAT TTCTGACACTTCGTCAAGGAAGCATGTCTATACCTGAGTATGCTTCTAAACTGGAGTCTTTGGCCAAGCATTTCCAATTC TTCAACGATCATGTTGATGAGCGCTACATGTGTAAGCGTTTCGTCAATGGACTGAGTATGCTTCTAAACTGGAGTCTTTG GCCAAGCATTTCCAATTCTTCAATATTTATATTTATTGAAGGGTAG
Protein sequence (LotjaGi6g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATYLLLGDAEYWWRGTRGIMEANNEEINWNSFRTAFLEKYFPTSARDEREAQFLTLRQGSMSIPEYASKLESLAKHFQF FNDHVDERYMCKRFVNGLSMLLNWSLWPSISNSSIFIFIEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 99 | 99 | 3.4E-15 | ||
| PANTHER | 2 | 99 | 98 | 1.2E-23 | – | |
| PANTHER | 2 | 99 | 98 | 1.2E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0094100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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