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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0096100 |
Transcript ID | LotjaGi6g1v0096100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glycosyl hydrolase family 5 protein; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|P54583|GUN1_ACIC1 Endoglucanase E1; TrEMBL-Plants: tr|I1LKM8|I1LKM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0096100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20671316..20676871) extracted from Lotus japonicus Gifu genome v1.2.
CCGAGTCACGAGTGATCGATCTTTATATATTTAGGCCAACGTTTGCACGGGCAAAGAGGACACTCGTGTCGTGACCGTGA GTAAGGAAGACTACATGTCGGTTCAAAGAAACAAACTACTACGCGTAATGGGTGGCAATTTCTCTCTTGCGTCAACAATG ATAATGGCAATGGTGTTGATCCTCTCAGCTGGCATCACACTTGAAACCATTAAGCCTGTGGGTGCTCTTCCACTCTCCAC AAGTGGGCGGTGGATTGTGAATGAAGGTGGCGGCGGCGGCGGAGAGAGGGTGAAGCTAGCGTGTGTGAACTGGGTGTCCC ATTTGGATGCTATGGTTGTTGAGGGCTTGAGCCAACAACCAGTGGATGTGATTTCAAAGGGAATTAAAAGCAAGGGGTTT AACTGTGTGAGACTCACTTGGTCACTCTCCTTGCTCACAAATGATTCTCTTACAGTCAGAGAATCATTCCAGAATCTTGG CCTTCTTCAATCCATCTCTGGCATGCAGGCCAACAACCCCTCCTTCATCGATCTTCCCCTCATTAAAGCTTTACAGGTGC ATTACTAATTACTCTCTTAGCTACTCAACCAGATTATTTAATTTCTTTTTTGGGAAAATTGCACTAATTATGAAGTACTA CTACATTTCATGATTTCAACTTCAACACACTTATTGTGGCTGGTTTGTTTTGTTGAAAACTTTTTTTATCAAGTGAGTGG AATTTAATTTGTTAACTTTCTTAAAAATAAACAAATCGAAATGAGTAATATATGTTAGAGAAGAGTGTGTTCTCCGAAAT ATATATTAATTATGTAAGAGTTTTGAATGATTTTTGTCTAAGTTAATTATTTTTATATTTAACATGAAACTTTTTAAAAA ATTATTATGACTTAAAAATGCATGGATGACAGTGATGAAAAATTGCTACTTTTCAATATAAATAGCTAAATTACCGTTAT TTAATTTAACACCACCTGTTTATTTTGTCAGTGACTAAAATGCCAGAAAGAAGTGATAGAATTAGCTAAATGACCAAATG ATTCTTTTTTAAATAAACGAGCTGATATTTAAAACCTGTACTATGCACATTTGTTATTTAACCAAGCTAGACGATGACGC GTTATTATAATAATTAATTAATCTCTCCATATATAGATATTCATTTTCCCACCAAATTGCCATTTGTAAGTAACAAATTG AACTACTCTATAGTATTTATATTTAGTAGTAAGATTAAGACCTACAAAACCTGGTCACTTCACAGGCTGTGGTGAAGAGT CTTGGAGACAACGACGTGATGGTGATTTTGGACAATCACATAACCCAGGCAATGTGGTGCTGTAGTAACACGGACGGTAA TGGGTTTTTTGGAGACCAGCATTTTGACCCAAACCTATGGATCATGGGTCTTACCAAGATGGCAACCCTTTTCAATGGAG TCACCAATGTTGTAGGCATGAGCTTGAGAAACGAGCTGCGTGGACCCAAACAAAATGTCCCTGATTGGTACAGGTAAATA AATTGGTTAAATTTTTTTACTACTGTTTTAGACTTTTAGTCAATCACATCCTTCTTTTTAAGGAGTCAAATGAGTTTCAG CTCAATTATTCAACCAGGGGCGTAGCCAGGATTTGCACGTCGGGGGGACTATAGATCAAACAAATGATTTATATATGCAT GCTTGGTAAAACTTAAAAAAATTATAGTGGACAAAAATAATGTAAAATTGCTTTTGTCGACTATCATTTTGCCTTAGCGT GATTTTTATTGTGTATCCAAACATTCACAATTATTAAAAAGAATTTTTTTCCTCGTGAATTCAGAGTATGTTTGGATACG AATCACATTTATCGTTAAGTATGTTAAGGAAGAAAAATGTACCTTAATATGTTTTTATCTTTTTTAAAAAAGTCATGTAA ACGTAATAAAGTATGTTATGAGTGTGAAACGTAATTAATGAAAATGTAGAAATGTGATACCTTTTCTATTTCACTTTTGT GTTGAAACACAAGAATTACAAAACTTTTCACATAGAAATCTAATATTTTATACATTTTATCAAATATAATTTTTTCAATT GATATTTTTTATAAATAAAAGAAATATATAATTAGTTTGAGTATAAAAGATACCAACAAAAAAAACTGTGTTTGTTATCT AAAAAAACAATAGAAAATAACACATAATAGTTAGTATGAAATATTTATCATAATGATCAATGATGTTAATATTTGGATGT ATAAATAACTTAAAACGTCATTTAAAATTCAAGAGGTGCACCTAGTATAATGGTAGTTCACTCTCACAATATTGTTTTGG GAATGGGTTCGACTCCGATTCAAATCAGTTGTCAATATTTTTTTTCGTTAAAAAAAACATATAACAGGAAAATCGAGATT CGAACACGGGACTCATTGATTGAAGGCAATAATGCTTGCCACTGGACCACCAAGTGACTTTTGATTTTTGCTAACTTTTA TTTTATATTATCTTTTCTACCGGTGCTAGAAAAAAATTTGCATAGTATCGCTATGAAAATTTAAAATTCCCGGGGGTGCA GAGCACCGGTAAGCCACCCCGGTGGCTCCGCCCCAGTATTCAACTCACTTTTTATATAGGTTGGGTCGAAAAATATAGGC TGATATTTAAATGATGTTTTTTTTTCTTGGCTCAACCTAATTCGATCATCTAAATGGGTTGATACCGAAGTAAATCACAT AGCTCGTGCGCCAACTCTTTTTTATTTTTTTTTGTCCGTAAAAAAGAATTAAAATAATGCTTTTAATTTATCAGAGACAA AATAAGTCGGTTTTTTATTAATGACACATTACTTTTTACACTTTTTGTGGTGATACATTGAAAAATTAAATTTTTCCACA TATGTTTCTAATTTGTAATTAATACTTTTATGATTTTTTGTGTGAATTGTCATCAATTTTTTTTTTTTATTTTATATAAA AGTAAGTTAGTTGATCTAACCCGCCGACCACCGCTTTTAGAAAGTTTAGTCAAGTTATGATTTTAGAGACTCACCATTAA AGTGAGGTAGTTCGAGTCAGATAATTTTTCTTCTAACTCATAGTGAGCAAAGTTCACTTTAAGAGACCCACTTCTCTTAC TTCTACCTACCTTCAGGCCCAGGGTAAATTTTCCTCCCTCAATTTTGGGTATATGATAGATTGGCTCTAAATACAGTTAC AACTTCATGTGGCCAAGTTATAGCTTCGCTACAAGAGATTGTTCAAATCACTCAAAGATTCGCCCCGGGTAAAATCATCA TATTATAAGTGACATAATAAAATGTTAAAATGTTGTTGGACCACCTATAAAATATGGTAATTTTACTCAATAATTACCTT ACTTAATTTAGATAACCCCAATTTGAAATGACTACTAACACATCTCTTTCCTTTCTGCAATTTTCCTCCCCAGAAGTTTT TGGTATGGGATAGAATAACTCTAAATATAGATATAGCTTCATGTAGGAATGATAAATTATTTTGTTTTGGATTTACATAT ATAGGTATATGTCAAAAGGAGCAGAAGTTGTACATGCAGCAAACCCAAATGTACTGGTCATTCTATCTGGCCTGAATTTT GACACAGACTTATCCTTCCTCGATAAACAGCCAGTGCAACTCACCTTCAATAAGAAACTAGTATTCGAGGCGCACTGGTA TAGCTTCAGCAACACTCAAGCATGGACAACAGGGGATCCAAACCAAGCATGCGGGCAAGTCACTCGGAACATGATGAGAA TGTCAGGGTTCTTGTTGCAACAAGGATGGCCATTGTTCTTGAGTGAGTTTGGGGTGGACATGAGAGGCACCAATGTGAAC GACAATAGGTTCCTCAATTGCTTCATGGCATTAGCGGCTGAGCTTGATTTTGATTGGGCTCTGTGGACATTGGCTGGAAG TTACTATACTGCACGTGGGATAGTTGGAATGGAGGAGTTTTATGGTTTGCTCAATGGGGACTGGAGCCAGGTTAGGAGTG AAAGCTTCTTGCAGAGGATATCTGCTGTTCAACTTCCTTTTCAAGGTACTATATTGAGTAAATACTCAATTTCATTCTTG AAGGTATAAGCATAAGTCAACTTAGTCACTAGAAGAGGGAACTACCCACGATTGCGTCTCAGTCAATTTAGTCTTTACAT GGACTAACTTGACCGATGTTTTATCTAACTGTAAGGACTAACTAGAATGACAGTCAACACAATAAGAAACCACAAAAATA TTTCCTTCTTCTAGAGACTAACTTGCCCTCTAAAGCATTTCCCTAAAAAAACCTCAAAAAACTAACTAGCAAACAACATC CCCTAAAGTAATTTTGTTTTAAAATTCTCTGCCCTCATGAACCAAACATGAAAGAGTTATTTCCCCTCCCATCACCCCTC TTCATCAAACATCATGATATGAATTAAAATTCATTCTTTCCCTCTCCATCCCCTCCACAAAAATCCCTTGGGAACTTAGT TGAAATAGTTGAACTCTGCCTTAGAAAGTCCAACCCAAACTAGCTTATTTACCTTCCCGTTTTTTATCATGATTTCATCT ATCCATGCCTATACATTGGTTGGATCAAATTGAATTATATATTTTTATATCAAATATCGTTGTTAGCCATATCATATGTA ATTGTATTTCCTCTTGACATGCAGGGCCATCAGAAGCTAAACCATATAAAGTGATTTTCCACCCATTGTCAGGCCTTTGC GTCTTAAAAAATGCACAGGACTTGCTGATCTTAGGATCTTGTTCGAATTCTGATATCTGGGAATACACAGAACAAAAAAT CCTATCAATGAAGGGTACAGATTTCTGTTTACAAGCTGCAGACGGAGAAGGAAAGCAAGTAAAACTTGGGAAAGAATGGT CAACTCCTAACTCAGCATGGGAAATGATCTCTGATTCAAATATGCAACTCTCATCTAAACTCAACAATGGTACCTCTAGT GTTTGTCTGGATGTAGACGCTGACAACGCCATTGTCACAAATGCTTGCAAATGCTTGAACAATGATAAAACATGTGACCC TGCAAGTCAATGGTTTAAACTTGTAGACAGCACAAGGAAGTTAACCTAAAATGTTATCTATGTTACATATGTTTACTACA AATTAAATTAAAGTGAAAATAAAATTACAGAAACTACTGAGCTAGCTTTGTATTTGTCTCTCTAGCTACCTTGCAGTCTT TAGGCAGAACCATGATTAATTAAGTAAGCATCTCCGTTTAAGATATTTAACATATATTACAACGAACATCTAACAATATA TAAATGAGGAAGGGAAGGTGCTGAGCTGTTTTTCCAAATCTATGGGACACAAATGGGTATTTGAAGCTGAGGAGCTAGTA ATCCTAAATGCTCTTCAATTTTGCAATGAATTTTCAAGATGCAAAATATTGAGATAGAGATTGATTCTTCTATCCCAGTG GGATCGGTGCGTGATGCCAAGAATAGGTAGAACATTGATTTCTTTTTCTTTTAGAATAAAGTTCTAAATTCTATTGTTTG TTGTTTTGTAAAATTTGAATAATATTCTTTATTATA
CDS sequence (LotjaGi6g1v0096100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTTCAAAGAAACAAACTACTACGCGTAATGGGTGGCAATTTCTCTCTTGCGTCAACAATGATAATGGCAATGGT GTTGATCCTCTCAGCTGGCATCACACTTGAAACCATTAAGCCTGTGGGTGCTCTTCCACTCTCCACAAGTGGGCGGTGGA TTGTGAATGAAGGTGGCGGCGGCGGCGGAGAGAGGGTGAAGCTAGCGTGTGTGAACTGGGTGTCCCATTTGGATGCTATG GTTGTTGAGGGCTTGAGCCAACAACCAGTGGATGTGATTTCAAAGGGAATTAAAAGCAAGGGGTTTAACTGTGTGAGACT CACTTGGTCACTCTCCTTGCTCACAAATGATTCTCTTACAGTCAGAGAATCATTCCAGAATCTTGGCCTTCTTCAATCCA TCTCTGGCATGCAGGCCAACAACCCCTCCTTCATCGATCTTCCCCTCATTAAAGCTTTACAGGCTGTGGTGAAGAGTCTT GGAGACAACGACGTGATGGTGATTTTGGACAATCACATAACCCAGGCAATGTGGTGCTGTAGTAACACGGACGGTAATGG GTTTTTTGGAGACCAGCATTTTGACCCAAACCTATGGATCATGGGTCTTACCAAGATGGCAACCCTTTTCAATGGAGTCA CCAATGTTGTAGGCATGAGCTTGAGAAACGAGCTGCGTGGACCCAAACAAAATGTCCCTGATTGGTACAGGTATATGTCA AAAGGAGCAGAAGTTGTACATGCAGCAAACCCAAATGTACTGGTCATTCTATCTGGCCTGAATTTTGACACAGACTTATC CTTCCTCGATAAACAGCCAGTGCAACTCACCTTCAATAAGAAACTAGTATTCGAGGCGCACTGGTATAGCTTCAGCAACA CTCAAGCATGGACAACAGGGGATCCAAACCAAGCATGCGGGCAAGTCACTCGGAACATGATGAGAATGTCAGGGTTCTTG TTGCAACAAGGATGGCCATTGTTCTTGAGTGAGTTTGGGGTGGACATGAGAGGCACCAATGTGAACGACAATAGGTTCCT CAATTGCTTCATGGCATTAGCGGCTGAGCTTGATTTTGATTGGGCTCTGTGGACATTGGCTGGAAGTTACTATACTGCAC GTGGGATAGTTGGAATGGAGGAGTTTTATGGTTTGCTCAATGGGGACTGGAGCCAGGTTAGGAGTGAAAGCTTCTTGCAG AGGATATCTGCTGTTCAACTTCCTTTTCAAGGGCCATCAGAAGCTAAACCATATAAAGTGATTTTCCACCCATTGTCAGG CCTTTGCGTCTTAAAAAATGCACAGGACTTGCTGATCTTAGGATCTTGTTCGAATTCTGATATCTGGGAATACACAGAAC AAAAAATCCTATCAATGAAGGGTACAGATTTCTGTTTACAAGCTGCAGACGGAGAAGGAAAGCAAGTAAAACTTGGGAAA GAATGGTCAACTCCTAACTCAGCATGGGAAATGATCTCTGATTCAAATATGCAACTCTCATCTAAACTCAACAATGGTAC CTCTAGTGTTTGTCTGGATGTAGACGCTGACAACGCCATTGTCACAAATGCTTGCAAATGCTTGAACAATGATAAAACAT GTGACCCTGCAAGTCAATGGTTTAAACTTGTAGACAGCACAAGGAAGTTAACCTAA
Protein sequence (LotjaGi6g1v0096100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVQRNKLLRVMGGNFSLASTMIMAMVLILSAGITLETIKPVGALPLSTSGRWIVNEGGGGGGERVKLACVNWVSHLDAM VVEGLSQQPVDVISKGIKSKGFNCVRLTWSLSLLTNDSLTVRESFQNLGLLQSISGMQANNPSFIDLPLIKALQAVVKSL GDNDVMVILDNHITQAMWCCSNTDGNGFFGDQHFDPNLWIMGLTKMATLFNGVTNVVGMSLRNELRGPKQNVPDWYRYMS KGAEVVHAANPNVLVILSGLNFDTDLSFLDKQPVQLTFNKKLVFEAHWYSFSNTQAWTTGDPNQACGQVTRNMMRMSGFL LQQGWPLFLSEFGVDMRGTNVNDNRFLNCFMALAAELDFDWALWTLAGSYYTARGIVGMEEFYGLLNGDWSQVRSESFLQ RISAVQLPFQGPSEAKPYKVIFHPLSGLCVLKNAQDLLILGSCSNSDIWEYTEQKILSMKGTDFCLQAADGEGKQVKLGK EWSTPNSAWEMISDSNMQLSSKLNNGTSSVCLDVDADNAIVTNACKCLNNDKTCDPASQWFKLVDSTRKLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
Phobius | 12 | 36 | 25 | - | – | |
TMHMM | 13 | 35 | 23 | - | – | |
PANTHER | 19 | 549 | 531 | 1.2E-273 | – | |
PANTHER | 19 | 549 | 531 | 1.2E-273 | – | |
Phobius | 37 | 551 | 515 | - | – | |
Gene3D | 44 | 406 | 363 | 3.8E-77 | – | |
SUPERFAMILY | 44 | 397 | 354 | 2.16E-62 | ||
Pfam | 91 | 366 | 276 | 8.1E-26 | ||
SMART | 416 | 537 | 122 | 0.0032 | ||
SUPERFAMILY | 416 | 543 | 128 | 1.25E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0096100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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