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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0096900 |
| Transcript ID | LotjaGi6g1v0096900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G67750.1 Pectate lyase family protein; Swiss-Prot: sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5; TrEMBL-Plants: tr|H2DL22|H2DL22_LOTJA Pectate lyase; Found in the gene: LotjaGi6g1v0096900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21008833..21010761) extracted from Lotus japonicus Gifu genome v1.2.
CATCTAATAGTCCCGATTATAAACACCCTAATAGCAACATCCCACATACACGTCAATTTTTCACTATCTCTCTTCTTATC ACATCGTATCATATATCACATCTATATTTATGATTTATCCCTTCATTTCTCTCACTATTATTTGGGTTTTAGACATCCAA TACTATCTACCAAACATTGTTCATCACCTAAATAGATGCAGTGCAACATGAGTCCTTGACCACATTGCATTTATATTATT TGGTTTTTCTTTTTCACAGGAGCATCATTGAGCATAGGAGAAAATTGGGTTTTTATTCATGTGGAACAGGCAACCCCATT GATGATTGTTGGAGGTGCGACCCCAATTGGGAAAACAACCGCAAACGGCTAGCAGAATGTGCAATCGGGTTTGGCAGACA TGCCATTGGAGGAAGGGATGGCAAGTTTTATCTGGTCACGGACCCCAGTGACCACGCAGTGAACCCCAAGCCAGGAACTC TAAGACACGCTGCAATCCAACAAGAGCCCTTGTGGATCATATTCAAGCATGACATGGTGATCAAGCTCGAGATGGATCTC GTTATGAACTCTTACAAGACCATTGATGGTAGAGGAGCTAATGTCCACATTGCTGGAGGGCCTTGCATCAAGGTGCAGAG AAAGACCAACATCATAATCCATGGCATTAGTATCCATGACTGCAAACGCGGTGGCAGTGGGTACGTGAGCGACTCTCCTA ACCATCAGAGCTGGAGAGGACGATCAGACGGTGATGGGGTCACGATTTATGATTCGAGCAATGTTTGGGTGGACCATTGT TCTTTGTCGAACTGTTTTGATGGGTTGATTGATGTTGTTCATGGATCAACGGCTATTACCATTTCGAACAATTACATGAC GCACCATAACAAGGTCATGCTCTTGGGTCATAGTGATTCCAATAAAGAGGATAAAAAGATGCAGGTTACGATTGCTTTCA ACCATTTTGGAGAAGGACTTGGGGGAAGAATGCCCAGGTAGGTGGTAGTTGTTCAATATACAAAAATAAGCCTAACATCC TGATTTAAATTGACTATGAGCTCATTCCAATGCGGATCAAAAAGTATTTATTGGAGGCTATCTAGTGCATTTTTAATAAA GAACTCCAATAAATGTTTTTTACTTTGTATGTAGATAGGCTACATGTCCAAAAACACATGACAACACATGAATTGTAAAC TTGGCTTGTTATGCATTTTTTTTCTTGGAAAAAGGCAACAACTTGAATACTTCTACCCAAATTTGCAGGTGCAGGTTCGG ATATTTCCACGTGGTGAACAATGATTACACACATTGGCAGAAGTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCA GCCAAGGCAACAGATTTCTTGCTCCAAATGATGAAGAACACAAAGAGGTCAGAGATACATGTAAAGAAATGTGGATTTTT TATTGGTTAAAATTCACATGGTTTTCACTAAATTAGAATTGATACTCATACTTTTGGTGGATCTTACATGAATTTCAATT AATCAATGAGAGAGGGTTGGAAATAGAGTGTTAAAGTGAGTGTTGTTAGCATTTTTCATAAACTGAATCATTTTGAAACC GTGATAATATATTTGCATGTATTAACCAAATTATGGTATTCTTTAAATTTTGAAGAAATAATTTATCAATTAACGGTGAT GACTTATTTTATGGGTGGCTTCAGATCACCAAACATTTTGGATCATCGGAGAATGAATGGAAGAACTGGAACTGGAGGTC TGAAGGGGATTTAATGCTGAATGGCGCCTTCTTCAGTCCGTCCGGAGCCGGTGCAACTTCTACATATGCTAGGGCGTCAA GCATGGAAGCAAGACCACCAATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCTCTTAGATGCAAGAAAGACTACATG TGCTACTAG
CDS sequence (LotjaGi6g1v0096900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATCAAGCTCGAGATGGATCTCGTTATGAACTCTTACAAGACCATTGATGGTAGAGGAGCTAATGTCCACATTGC TGGAGGGCCTTGCATCAAGGTGCAGAGAAAGACCAACATCATAATCCATGGCATTAGTATCCATGACTGCAAACGCGGTG GCAGTGGGTACGTGAGCGACTCTCCTAACCATCAGAGCTGGAGAGGACGATCAGACGGTGATGGGGTCACGATTTATGAT TCGAGCAATGTTTGGGTGGACCATTGTTCTTTGTCGAACTGTTTTGATGGGTTGATTGATGTTGTTCATGGATCAACGGC TATTACCATTTCGAACAATTACATGACGCACCATAACAAGGTCATGCTCTTGGGTCATAGTGATTCCAATAAAGAGGATA AAAAGATGCAGGTTACGATTGCTTTCAACCATTTTGGAGAAGGACTTGGGGGAAGAATGCCCAGGTGCAGGTTCGGATAT TTCCACGTGGTGAACAATGATTACACACATTGGCAGAAGTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCA AGGCAACAGATTTCTTGCTCCAAATGATGAAGAACACAAAGAGATCACCAAACATTTTGGATCATCGGAGAATGAATGGA AGAACTGGAACTGGAGGTCTGAAGGGGATTTAATGCTGAATGGCGCCTTCTTCAGTCCGTCCGGAGCCGGTGCAACTTCT ACATATGCTAGGGCGTCAAGCATGGAAGCAAGACCACCAATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCTCTTAG ATGCAAGAAAGACTACATGTGCTACTAG
Protein sequence (LotjaGi6g1v0096900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIKLEMDLVMNSYKTIDGRGANVHIAGGPCIKVQRKTNIIIHGISIHDCKRGGSGYVSDSPNHQSWRGRSDGDGVTIYD SSNVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSNKEDKKMQVTIAFNHFGEGLGGRMPRCRFGY FHVVNNDYTHWQKYAIGGSSSPTIFSQGNRFLAPNDEEHKEITKHFGSSENEWKNWNWRSEGDLMLNGAFFSPSGAGATS TYARASSMEARPPMLVASMTAGAGALRCKKDYMCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 6.2E-170 | – | |
| PANTHER | 1 | 274 | 274 | 6.2E-170 | – | |
| SMART | 1 | 197 | 197 | 9.0E-98 | ||
| SUPERFAMILY | 1 | 274 | 274 | 2.15E-77 | ||
| Gene3D | 1 | 267 | 267 | 7.3E-88 | ||
| PRINTS | 8 | 24 | 17 | 3.4E-59 | ||
| Pfam | 9 | 191 | 183 | 3.7E-26 | ||
| PRINTS | 72 | 93 | 22 | 3.4E-59 | ||
| PRINTS | 152 | 171 | 20 | 3.4E-59 | ||
| PRINTS | 174 | 193 | 20 | 3.4E-59 | ||
| PRINTS | 216 | 240 | 25 | 3.4E-59 | ||
| PRINTS | 245 | 268 | 24 | 3.4E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0096900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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