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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0101100 |
| Transcript ID | LotjaGi6g1v0101100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase alpha subunit B; TAIR: AT1G67630.1 DNA polymerase alpha 2; Swiss-Prot: sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B; TrEMBL-Plants: tr|V7CZZ6|V7CZZ6_PHAVU DNA polymerase alpha subunit B; Found in the gene: LotjaGi6g1v0101100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22189748..22196424) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTCCCGGCACCTCAAACCCAAACCCTAGAACAGTGTTACAAACTTACAAACCCAAAGCAAATCCCCTCCGCCATCT CCCCCCTGAAGCCGCTCTGTCATCATCTCAAGTCCGATCCGTAGTTGCCTTGTAGAAACCCCTCTCCAGTTCGACTGCGA CGTCGCCGAAGGTGTCCTCAGTTAAGTTCGATCTGCAATTTGCCGCTCCTCCAGCTCGCTCCGGCGGCCGCCGCACGTCC AGCAGCTCCTCCGTGTCCCATCGAGGTAAGCGATGATGTATCCTCCTTTAATGCACACTGAGTCGGAGATGCGGTTTTTT ATTTTTAAATCACACAGAGAAGCTATATTTATTGTACAGAGATGTTTGAAGTTCGATTTTCATGTAACTTTCATTATTGG CTATTTTATAAATGTTGAATACAATGTTTGATATTATGATGAAGCCATATTCATCTTCAGGAAATCAATTTTATCATTTC ATTAACAATTTAACATATTATTGCAGTTGTGGTTGTCTTTGCTTGACATAAACAAAATTTGCATTATTGTAATTTGCTTG TGTTGTAACAAAACTTTGTGTGATTAATCATGGTTGAAACTTATTTGTGAGCTTTGGTTTGCCTTAGAGGGACAACATAG GTTGCTTATTGCTGGAAATTAAAACCTTTCTGATTGGTTTTTAATTCAGAAAGCGCGCAATGAATGAGGAAATCAAGTCA GAATTCAGAAAAAGCGGGTTCCATCTCAACAAAGAAGAAGAAGAAGAATTACTGAGCAAATGTAACTAGTTCTTCCTTTT ACCTTTCTTCTTTTGTCGATTCATCATACAAATAGTTTATCTATTGACAAATCATGTTCCCTAATGTGTAGGTGTCACTT TCTGTATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAGGTTTACTACCTCAATAGGTCTGTCTCTTTT GCAACTGCCATCTATTTACTTATATGTTCCCTTGCACTATGTGAATTTTATAGTTTATACTTTACAATAATATATTATGA GAAATTTAAAATGAAGTAAGCATTTTAACAAGCTGTGAAGAACCATGTTATTCTTTCATGCACTAACTTCGTTAATTTCT TTTAACTTGAATTTATGTCATTTTTTTAATAAGTTGAAGTGTTGAATTAACCACTCAGTTCAGGTGCTTTGGTTTGCTAG ATAATTTACAATTTTAATTTGGATGGTGGTTTCTGTGGCAGGCAGCTGAACGAACCAACTGTGCAAAATGTTGAAATGGA CGGTTTTCTGATGCATCTACAAAATAATATGAAAGAAGATGTTTTAATGGAGGAAGCTGCATGGCATAGTTACTCTATCA AAGATGTAGAAATGTGAGCATATCCTACTTGGATTGCATGTTCGATTACTTTAATAATGCTTTAATTGGGACCATTGCAC TGTCTTAACTGTTAACAAATAAATTCAGGGCAACTTTATTTGTAGTTCCATTTCTGAAACAAGAAATTCACAGCTCTTTA AATAAAGCTTTCGGCATCTAGTGAAAATTGTGGACAGAATTAAGAGAGAAAAATTATTTAACTGCATTAAATGGTGTTTG AACAAACCTTCTTTTAGCTTGCATCATTGTGTAAACGTTGAAGCAAATGATCTGGCTGCTGCATCTACTTGTATTCAGCT CCCTTCCCTGTATCTATTTCTAAGGATTATATTTGCACTTATATACATACATATATACATATATATATATCCCTTGTCTT TGACACAAAAGCACTAGAATTATGGTTTCTGTTTATCTTATCCTCTATGGTTATGTAATAGCTGATAAGGCTTACGGAAT TTTATGTTAGTCCATAATTACCTCTAAAAGACACCTTATTAAAATGAAAATCCTTTCATGCAGGATCTTAAATAATGATG ATGATAAAAAGGACAATACTCCCGGAACGCCAACGGATCATCATCAAGATCTTCATTCACCTGCACATGATACGCCATCT TCAGTGTATGAAAATGTCTCATATTCTGGAAAACCATCAAATCTAGTGACACCCTTTTCAAAGCGAACAGATAGGTTTGC AGTGAAAGTTAGCATCAATACCATCCCTGATGTAGAGAATGGAAAACAAGAACTGAATCATGAGAACGCTGAGAATGACG AGGACAATGTTGTTAGGAAAGTTCTGCCCCGTGAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCGAACCTGGTTGC AGGTTCATGTATGATCGGATTGAGGATAGGGTATTTGCTATATATTGTAGCTCTTACATTTTTATCCTATTACATTTGTT TGTTGGAATCTGATTATTGTTATTTAGGTTAATGCAGTAGAAAATCGGATTAGGAAACATGCAAGAGCATTTGTAACTTC TAGGCTCTATGAAGAACTTGCAGATCCTACTATTGCTTCGCAGGTAAATTTAACACATCTCTCATGCGTACACGAAAAGT TGAAGCTAAATTGATGTTTTTCTTCGAATTGTATATATACATATAAAAAACATAAAACTATGGGCTCTTGGCCAATGAAA TCATCTTTCTGTTTTGTTTTTTAACCCGAGCATCAGTTCCGGTCAGTGACTACATTGAATGATCTCTTCCTTGGTGTAAA TTGTCTAATAATTTAAATTAATATGCTTTATCAGAGAAGCATTTTTGCTGTTGGCATGATATGTTGTGATGGAGAAGGCC GACTAAATGAGAAGTCAGTCATGCTGCAGAGCAGGTATACAGCCAACTGATCTGTGTATATTATTTATGGGTATATATCT TCTATCTCTTATCAGGCTGATGTATCTATTGCTGGCCGGTAAGTTTGATTTGTTAAGGAACATGTAACAAATACTCTTTC TGAAAAAGGCAGTGTGCTCTGTTCAACTTGACCAGAGCTTATGTCAACAAGAGGAATGCCATCATGTGATTCTTAACATT TTGTGATCCGTTATTTAGTTTTAGAGAGTTCATGTGCCGATTAGCCTGTTGACTCATTTGAGGTCTTGACTATGTTCAAG TGTGACATTACATATATATATATATATATATATATATATATATATATCATATTTTTGCTCCTTTTTAGCTCTTCATTTTT ATCTATCATTCTTGGATCTGTTTTCTAAATAATAACTCAGACAGTATGGTGCATTCATATATTTGCTACATTTTAGCCCT TCAATTTCATCTATCATAGATGGATCTGTTTTCTAATTAATAACTGGACAGTATGGAGCACTCTGGAGGAGAATGTGTTC GCCTAGACTTACAACATTTAAGCCACTATTCAGTTTTTCCTGGCCAGGTAAGAAATAGTGGGTTAGGGTTCAGGTTTTAA ATGCCAAGTGTATTTGCATTATAAGTTAAAAGCGGAAAACTTCATCTTGATAGGTAGTTGGTATTGGAGGGCATAATCCT AGTGGGCATTGCTTAGTTGCATCTAAATTGGAGGATTCTATACCTACTTCTGTTGCTGATGAGGATTTGAATCCTCCAAA GAAGCGAGCTATTGATAAGGAGAATCAGCCAACTGATCTGTTCTCTAAACCGAGAGCGTTATCAATGGTATGCATCTTTC TTTTCGTTACTTATGATTTATCTGGATTCTGAAAACTATATTGTGCACTCTATGTAAGTTTTTATTGAATTATTTTTAAA AAACATTTAGAATTTTTTATCTTTTACAGTTTTACTGAAGATTCATTTTTAATTAGGAAAAAGTGTCCTAACATCTTAGT TACATATTCATAAGGAACTCATGCAACACATACAATCTGTCCCATATATTTGACTCAAAGTTATACTTTAGGTTTTATAG ATTTTCAATAATTACAGGCTATGTTCAAATATTTTTGGGATAATCCTTTGCATACTTCATTTCTGTTCATGATTTATATT TACAATGCTTTTGGTGGTTAACAGATTATTGCAGCGGGTCCTTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGT AGAACTACTTGCATATGCAAAGCGAAAACCGACACAGTTGCTTGTATTGGTAAATACCATCTATATCAGATCTATAAGTC CTATACTTCAATCAGCATTTTCATAAGTACTATTTTTTGGGTCTTGGACAATATGTTACTCATGTAAGGATGCAAACTTG ATGTTGACAACTGGATTTTTCTCAGCTGGGACCATTTATTGATTCGGAACACCCAGACATTAAGAAAGGAACAACAGATC GGAGTTTTGATGAAATATTTCATTTTGAAATCTTGAGGAAGGTAATAACTTTTAGTAATAGGATTTTTTTAGATTTCTCT TTTGTTCTTTTCTGACACACCCGGTGGATTGGCTATTCCCAGTTGCAAGATTATGTAGAATGTATGGGTTCAGCAGCACG TGTTCTCCTTGTTCCATCTATACGTGATGCTAACCATGATTTTGTTTTTCCTCAGGTAATGATAAAATTGAGCCAACCAT CATCCTATGATTTTTGTTCTAGATACATAGCCAGTGCATTAGCTTAGCTTAATCATCCAAAAATTGATTTAAATCATTTT TTTTGCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGGTATAATGATTTTAAAACATCCAATAATCTATC TTCAGAACTGTTACTTGTACCAGCAGAATATCATTCACTATTGGTGATGCTAACATTATCATTGTTTTATAATTCAGATA GTCAGTCTCGCTAACCCTGGACTCTTTGAAGCAAATGAGGTATTGCATGGCAATTTGACATTATGACTTACTCTTGAAAC ACAAGAAGGATATTTGTTATGAAATCTTAGCTGTTTCATTGAGAAACTTGCACCTTAATAGAGTTTGTTCAAAGACGTAT TTATTGAAACTTGTATTTATTAAAACCTGTATTTTCTAATCACTAAAGTGCTTATTTACATCTTACTATGTTTCTTTTGG AACAAGAGAAACAAAAAAGATTAAGTTATAGTGTTTATTTAGATGTTGTGCCTGGAGAAGAGCATGTGAGAAGTATTTTA ACCAACGATTGGGTTTCAGGTCAAAGTTGGTTGCTGCACTGTGGATATTCTCAAGCAGCTCAGTGGGGAGGAGATATCAC GAATGGCAGCAGATGGAAAACCTGTTGATCGCTTGAGTAGACTTGCAAACCACATTCTTAACCAGCAAAGGTAATAGTAT TATTCTGTAATTTTTGTGCTTTTGATGTTAGCTTCATCAGAAATAATTGATGCTTTTCAATTTTGGAGTCAGCTTTTATC CACTTTACCCGCCAGCAGAAAGTGTTCCCTTGGACTCTTCTCTTGCTCCAGAAGCCCTTCAACTCTCTTTGGTTCCAGAT GTTCTTATCTTACCTTCAGATATAAAGTATTTTGTGAAGGTAAATGATTGTTTAGGAAGACGCTTTTTCTTCCCAGACTA TCAAATAAGCCTGTGATGTGAAACATTTAGAATTTTTTTCACCACTATGCAGGTGCTGAGTAGCGAACGTGAAGGGATAG ACCACGCGAAATGTGTCGCCGTCAACCCGGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGTAGAGCTCGATTAC TGTGGAGGTCCTGATAAGATTAACGCTTCAGTTGTTGGCATATGAAGCTTGTTTTATTTTCGGAGGTTACACTGGCTTCT TTTTATGGCATTGTATAATATGTATTTATAATTTTCTTTTCTTGAAACTGAATGATGACTTTTCGTTCAGTATGCATTAT TCTACTTGTTTTTCTATGCAACTGTTCCTTGGTTATGTTTTGCTGGTGCATGCTCCGGTACCCACAATTACAAATGAGTG GACCATACATTAGTGACACGTACCACTAAAATAAATACACTTAAAAATTAAGATAATACAGATAAGTGAGTAATGACATC ATACTGTTTTTTAATTTACACTCAATCATTTAGTATTTGCTTAATGGCCCCTCTTTTATTTAATTAACTCAATAATGACC CCACTAATTTTATTTCAACATCAGACTTCAGTAGTGTTCTTTCATCTTCACCTTTTTCACCTTCTTGTTCTTCATCTTCT TCTAACAATCATTCGCAAAACCCAACACATTCAATCTCACTCCACTTCCACTATCTCATTCTTTTCCTTTCTCAATCCCA CCTAAAAAAACAAAACCCAGTAATTTCAAACTCAGAAGCCCCTTCACCCAAAAGCTCTCACTCAAAATAGAACCCAGAAG TCCCTTCAACCTTTCAAACTATTCAAACCCAGAAACCCACTCGTCAGATCCAGAATCAACAGAAATAGGCAACAATATCT TTCATTTTCCAACAGTAGGCACGAATCCTCCTCAACCGAATTGCTTCCAAGCCCAGATACAGCGGCAATTGCAGCAAGAT CTCACCTTTTCACAAAGATGGAGGCAAGGGGTGATAGAACCCTAAATGGAAAAGGGTGAATTTCAGCACAGTTGCCGTGT GGAAGAAAACGAGTCTTGGGTCAATAGAAAAATGATTCTTGTGGCTTGAGCTAGTGCTTATATGAATGAATTGATTGAAA GCATTAGATTATTTGAGATTGAGGAAGTAAGCCACAGAAGAGGGTTCGACATCATGACCTGTGAGGAAAAGTTAAAGAAT TGGTAAAGGATAAACTGATAATATTAACAGTTTTATG
CDS sequence (LotjaGi6g1v0101100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGAGGAAATCAAGTCAGAATTCAGAAAAAGCGGGTTCCATCTCAACAAAGAAGAAGAAGAAGAATTACTGAGCAA ATGTGTCACTTTCTGTATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAGGTTTACTACCTCAATAGGC AGCTGAACGAACCAACTGTGCAAAATGTTGAAATGGACGGTTTTCTGATGCATCTACAAAATAATATGAAAGAAGATGTT TTAATGGAGGAAGCTGCATGGCATAGTTACTCTATCAAAGATGTAGAAATGATCTTAAATAATGATGATGATAAAAAGGA CAATACTCCCGGAACGCCAACGGATCATCATCAAGATCTTCATTCACCTGCACATGATACGCCATCTTCAGTGTATGAAA ATGTCTCATATTCTGGAAAACCATCAAATCTAGTGACACCCTTTTCAAAGCGAACAGATAGGTTTGCAGTGAAAGTTAGC ATCAATACCATCCCTGATGTAGAGAATGGAAAACAAGAACTGAATCATGAGAACGCTGAGAATGACGAGGACAATGTTGT TAGGAAAGTTCTGCCCCGTGAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCGAACCTGGTTGCAGGTTCATGTATG ATCGGATTGAGGATAGGGTTAATGCAGTAGAAAATCGGATTAGGAAACATGCAAGAGCATTTGTAACTTCTAGGCTCTAT GAAGAACTTGCAGATCCTACTATTGCTTCGCAGAGAAGCATTTTTGCTGTTGGCATGATATGTTGTGATGGAGAAGGCCG ACTAAATGAGAAGTCAGTCATGCTGCAGAGCAGTATGGAGCACTCTGGAGGAGAATGTGTTCGCCTAGACTTACAACATT TAAGCCACTATTCAGTTTTTCCTGGCCAGGTAGTTGGTATTGGAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCT AAATTGGAGGATTCTATACCTACTTCTGTTGCTGATGAGGATTTGAATCCTCCAAAGAAGCGAGCTATTGATAAGGAGAA TCAGCCAACTGATCTGTTCTCTAAACCGAGAGCGTTATCAATGATTATTGCAGCGGGTCCTTTTACTACAACAGACAATT TGTTGTTTGAGCCTCTTGTAGAACTACTTGCATATGCAAAGCGAAAACCGACACAGTTGCTTGTATTGCTGGGACCATTT ATTGATTCGGAACACCCAGACATTAAGAAAGGAACAACAGATCGGAGTTTTGATGAAATATTTCATTTTGAAATCTTGAG GAAGTTGCAAGATTATGTAGAATGTATGGGTTCAGCAGCACGTGTTCTCCTTGTTCCATCTATACGTGATGCTAACCATG ATTTTGTTTTTCCTCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCGCTAACCCTGGA CTCTTTGAAGCAAATGAGGTCAAAGTTGGTTGCTGCACTGTGGATATTCTCAAGCAGCTCAGTGGGGAGGAGATATCACG AATGGCAGCAGATGGAAAACCTGTTGATCGCTTGAGTAGACTTGCAAACCACATTCTTAACCAGCAAAGCTTTTATCCAC TTTACCCGCCAGCAGAAAGTGTTCCCTTGGACTCTTCTCTTGCTCCAGAAGCCCTTCAACTCTCTTTGGTTCCAGATGTT CTTATCTTACCTTCAGATATAAAGTATTTTGTGAAGGTGCTGAGTAGCGAACGTGAAGGGATAGACCACGCGAAATGTGT CGCCGTCAACCCGGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGTAGAGCTCGATTACTGTGGAGGTCCTGATA AGATTAACGCTTCAGTTGTTGGCATATGA
Protein sequence (LotjaGi6g1v0101100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNEEIKSEFRKSGFHLNKEEEEELLSKCVTFCINYSLSPSDLVSSWEVYYLNRQLNEPTVQNVEMDGFLMHLQNNMKEDV LMEEAAWHSYSIKDVEMILNNDDDKKDNTPGTPTDHHQDLHSPAHDTPSSVYENVSYSGKPSNLVTPFSKRTDRFAVKVS INTIPDVENGKQELNHENAENDEDNVVRKVLPRERCSLVVHGSGPEPGCRFMYDRIEDRVNAVENRIRKHARAFVTSRLY EELADPTIASQRSIFAVGMICCDGEGRLNEKSVMLQSSMEHSGGECVRLDLQHLSHYSVFPGQVVGIGGHNPSGHCLVAS KLEDSIPTSVADEDLNPPKKRAIDKENQPTDLFSKPRALSMIIAAGPFTTTDNLLFEPLVELLAYAKRKPTQLLVLLGPF IDSEHPDIKKGTTDRSFDEIFHFEILRKLQDYVECMGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPG LFEANEVKVGCCTVDILKQLSGEEISRMAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLVPDV LILPSDIKYFVKVLSSEREGIDHAKCVAVNPGRLAKGEGGGTFVELDYCGGPDKINASVVGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 611 | 611 | 3.8E-171 | ||
| PANTHER | 1 | 615 | 615 | 2.6E-210 | ||
| Pfam | 23 | 248 | 226 | 7.4E-6 | ||
| MobiDBLite | 101 | 131 | 31 | - | – | |
| MobiDBLite | 101 | 123 | 23 | - | – | |
| Coils | 213 | 233 | 21 | - | – | |
| Gene3D | 342 | 507 | 166 | 4.4E-37 | – | |
| Pfam | 362 | 572 | 211 | 4.5E-40 | ||
| Gene3D | 513 | 615 | 103 | 5.1E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi6g1v0101100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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