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LotjaGi6g1v0106300.1

Overview

Field Value
Gene ID LotjaGi6g1v0106300
Transcript ID LotjaGi6g1v0106300.1
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase like protein; TAIR: AT2G38400.1 alanine:glyoxylate aminotransferase 3; Swiss-Prot: sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial; TrEMBL-Plants: tr|A0A072UX79|A0A072UX79_MEDTR Alanine-glyoxylate aminotransferase-like protein; Found in the gene: LotjaGi6g1v0106300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:23748381..23752412) extracted from Lotus japonicus Gifu genome v1.2.

TGATGCTGTCATTGGCTATTTGTTGTGCTCTGAAGAAAGAGCCACGAGACACTCACGGTCACACACAATAGCAAAGGATG CTGCCACAACATCTCTGTAAGCGTTCTGTGTGGAACCAAATTTGTGGGTGGCAGCGCCGTGTGTTCTCCGCCATAGCTCC AAGCAATGAAGATGGTGGCAGCCACTTTCTTCCTCAAATGCCACATTTCAGTCACACTCCAGCTCCCTACAACGGGCCTT CAGGATCTGATCTCTTGAAGAAGAGAAAACAGTACCTGCCCACAAGTGCTGGTCCTTATTACACTCACCCTGTAAGCACT TTTTTGATTTTTCTGTGCTCTGTTCTATCTGATATTATGAAGTGCTTTTGCAGAAGAATTGATTCTTTTTTGAATGGTGT TGCAGTTAAATCTGGTGGAGGGTAAAATGCAATATGTGTTTGATGAAAGTGGACGGAGATACCTTGATGCCTATGGTGGC ATTGCCACTGTTTCATGTGGGCATTGCCACCCTGATATTGTTGATGCAATTGTCAATCAGACTAAGCTTTTGCAGCATAC CACTGTCCTCTATTTGAACCATACTGTTATTGATTTTGCTGAAGCTCTTGCTGCTAAGTTTCCGGGTGAACTCAAGGTTT TTATTCATTTTGCTTTTATTTATTTTTTTCTACTTTTTTGTTGTTAATAACTTTTTGTTTTTGAGCTCGGTTAAGGCACA CATTACGAGAGATATGACTAAATAAGTTCGTATATAAGGCAGAACAATCCTCGCCTTTGAACTAGTTTTTTGGGTAAAGT TAAGCCTAATCCAAATTTTAAGATGATAGCAGTGTCTATCTTAAATCTGTTTATTGGAGATTACTCATATATGACTAAAT ATATTAAAGTCGTATATATATCATGAGGAGTGTGCTAAGGTCCCAACTAGAGATATTACCAAATGAGTCTTTATACAGGG TAGAACAATCACTACTTCTAATCTAGCATTTTAGGAAGAGTTATACCTAATCCGAATTCTAAGAAGCTTTGTGTTTTACT ATATTGGTGAAGAAATTTTGAATTTTTCAGGCTGTTTTCTTCACAAATTCTGGGACAGAGGCCAATGAGCTGGCTATGAT GATTGCTCGTCTGTACACAGGCTTCCATGATATAATTTCCATTAGAAATGGCTACCATGGCAATGCAACCTCAACAATGG GTGCCACTGCTCAATTTTATCACAAGTTTAATGTTGTACAGGTGCCATTTTTCCTGCTGAATAATAGTTGTCTCTTTTGA ATCAGTGATTGTTTCAATCTAATAGCAAGCATAGCCTAAAGCTACAACTCCATAATAACAATAATAGCAAAAAATGTCCA ACTTGTGTCCGCTCTACTCTTATACTTGTCACGGTGTCTGTGCCAGTAGACTGGAACTCACCATGCCCTTAACCCAGACC CCTACAGAGGTGTCTTTGGTTCTGATGGAGCAAAATATGCCAATGATGTTCAAGACATAATTGATTATGGAACTTTTGGT CATGTTGCTGGGTTTATTGCTGAGGCCATTCAGGTAATATATAGTGTTATTTTGTGTCTCACAATGGCTTTCATATTTTT AATAGCATCTTTCGATCTGCTTCTCCGTATCCATAATTAATTCTGAAACTCATAAGCTACTCATGTAAGGTTTTCAAAAT TTGATTTCAGCTTTAGAATCAATTGTAAAATGATTTCCAAACATGCACTGAGTATAAGGTTCATGTTTGACAGGGAGTAG GTGGAGTAATGGAATTGGCTCCAGGTTACTTGCCAGCCGTTTATAGCATCATAAAAAAAGCAGGAGGTCTCTTCATAGCT GATGAGGTTCAGTCAGGGTTTGGTCGTACTGGTAGTCACTTTTGGGGTTTTGAGGCACATGGAGTTATCCCGGATATTGT AACACTAGCAAAGGTAACACTTATGAAGCAGCATTGGTGATTTTTTTTATTTACTGTCTTTCAGGGAAAATGACTTTGCA TTTGCATTCTGCATTCATATGTATCATGCATGAATAATACGATTTCTTAGATTATGTGAACACAGTCTTTGGTGATTTTT TTTATTTACTGTCTTTCAGGGAAAATGACTTTGCATTTGCATTCTGCATTCATATGTATCATGCATGAATAATACGATTT CTTAGATTATGTGAACACAGTCTTTGTATAATAAATGTATCTACTAGTACAAAGGAAATGTGCCATGGTACAAATAATCA AATAATATCATGATACTCAGCTTCTCATGTCTCAGTGTTGGTTAATGACAGAAATTTATGGATCAATTTGCTGTGATGTT CAAATAATTGTCAATTTCATATGGGGATAGAGGAAATCTTGAACTTTGTTATTATGAGATTCAAAAATAAGATTTTAACT GGCTGAATGTTTGAATTTTCCACTACTTATTATCACCTTAAATGTAATTGTAACACTACATTAGCCCTGCAGTTTTATTT ATTTAGTGAACAATTACTAAGGCATGCATATGTAAACCATTGCTTACCAAAAAAAAAAATCATATGTAAACCACTGACCC TGTTTGGAGAACAAGCATTACTTTGTAGCAGTGGTCCTCTCAGGGTATTTGTTGATTGATTACGGCTAGGTTAATTTGGA CATCCATTGGCACTACTGTAAATGGACTTGAGCCTTACTTTAAGACAAAACGTGAACGAAACTCTTCTAATGGATGAAAG TCTGTACACATTGCACTCAATTAATATTCAAAAAGCTACAACATCTTTGAGTATTTTGTTTCATTTTCTGTGGTCCTCTC AGGGAATTGGTAATGGTGCACCCATTGGTGCAGTGGTCACCACTCCTGAGATTGCGAAGGTCTTGACTTACGGCTACTAT TTTAGCACGTTTGGGGGAAATCTTGTTAGCTCTGCTGCTGGGTTAGCTGTTCTGAATGTAATTGAGAAGGATAAACTTCA GCAAAATGCGCTAAATGTTGGATCATATTTAAAAGAGCGTCTTAACTCACTGATGGAAAAGCATGAGAGTAAGCTTCTTT TCTCTTTCAACTTTTGGTTTGTTGCATGAGAATGGAGGAGATTAGTGTAGTGAGGATAGATATTTGGATTATGATGACTA ACATGTTTTTTTATGTCAGTAATTGGGGATGTGAGGGGAAGAGGACTGATGCTTGGAGTTGAACTTGTGAAAGATAGGCA GTTGAAAACTCCTGCAAAAGATGAAACACTACAGATTCTTGAACAGATGAAAGGTTTAATCTCTAGCTCCTATCTGGTTT AGTGCATATTTAGAAATATTTCTACAATTGACTCCAAAGTAAGAACTAATTTTGGATAGATGCTTCTGTGAGTAGCTTCT TGATTCCAAATTTGATTCTAAGAACGGAGAAACTGATCCAAACATGCTGTCAAACATTGTGTATACGGTATACCATGATA CCCACAAATGAGTTGATATGAATTTTTTTTTCATTGCTTTTACCATTATTTTTCAGATATGGGAGTGTTAGTTGGGAAAG GTGGCTTTCGTGGAAATGTTTTGAGGGTTGCACCCCCACTTTGCTTCACTAAGGAAGATGCAGGTTGATTGTCATCATTA ATATGAACCTTTTTGTTTCTCTTACTAGTAGACATATATTCCCTTTGCTAATTCAGGGTATTTTCTCCATAATTGTAGAT TTTCTTGTAGATGTGATGGATTACACAATGTCAAAGATGTGACTGACGCCTAAGCAGTACTTTTGGATGAAGGACGTGTT TCAAGTTTCAATTCTGATATTGGAGGACCCCAATGAAACCTAATGTTGTGCAAAGCTAATGTAAAAGCAAAATCAATGAT TGTACTTTTGGGGCAGCCCCAGAAAGAATTAGGCATGAGAATGGCTGTGCCAATCGAATGTAAAACATAATTGGTGATTG CACATTTTGGGTGTAGGACTGTGACTTGTAAGCCCAGAAAATGAGACAAATAAAGCGTACATGTTGATGTAGTGAACCTT GTATGTTTGTTTTGAATAAAATTTAATTTTCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0106300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCCACAACATCTCTGTAAGCGTTCTGTGTGGAACCAAATTTGTGGGTGGCAGCGCCGTGTGTTCTCCGCCATAGC TCCAAGCAATGAAGATGGTGGCAGCCACTTTCTTCCTCAAATGCCACATTTCAGTCACACTCCAGCTCCCTACAACGGGC CTTCAGGATCTGATCTCTTGAAGAAGAGAAAACAGTACCTGCCCACAAGTGCTGGTCCTTATTACACTCACCCTTTAAAT CTGGTGGAGGGTAAAATGCAATATGTGTTTGATGAAAGTGGACGGAGATACCTTGATGCCTATGGTGGCATTGCCACTGT TTCATGTGGGCATTGCCACCCTGATATTGTTGATGCAATTGTCAATCAGACTAAGCTTTTGCAGCATACCACTGTCCTCT ATTTGAACCATACTGTTATTGATTTTGCTGAAGCTCTTGCTGCTAAGTTTCCGGGTGAACTCAAGGCTGTTTTCTTCACA AATTCTGGGACAGAGGCCAATGAGCTGGCTATGATGATTGCTCGTCTGTACACAGGCTTCCATGATATAATTTCCATTAG AAATGGCTACCATGGCAATGCAACCTCAACAATGGGTGCCACTGCTCAATTTTATCACAAGTTTAATGTTGTACAGACTG GAACTCACCATGCCCTTAACCCAGACCCCTACAGAGGTGTCTTTGGTTCTGATGGAGCAAAATATGCCAATGATGTTCAA GACATAATTGATTATGGAACTTTTGGTCATGTTGCTGGGTTTATTGCTGAGGCCATTCAGGGAGTAGGTGGAGTAATGGA ATTGGCTCCAGGTTACTTGCCAGCCGTTTATAGCATCATAAAAAAAGCAGGAGGTCTCTTCATAGCTGATGAGGTTCAGT CAGGGTTTGGTCGTACTGGTAGTCACTTTTGGGGTTTTGAGGCACATGGAGTTATCCCGGATATTGTAACACTAGCAAAG GGAATTGGTAATGGTGCACCCATTGGTGCAGTGGTCACCACTCCTGAGATTGCGAAGGTCTTGACTTACGGCTACTATTT TAGCACGTTTGGGGGAAATCTTGTTAGCTCTGCTGCTGGGTTAGCTGTTCTGAATGTAATTGAGAAGGATAAACTTCAGC AAAATGCGCTAAATGTTGGATCATATTTAAAAGAGCGTCTTAACTCACTGATGGAAAAGCATGAGATAATTGGGGATGTG AGGGGAAGAGGACTGATGCTTGGAGTTGAACTTGTGAAAGATAGGCAGTTGAAAACTCCTGCAAAAGATGAAACACTACA GATTCTTGAACAGATGAAAGATATGGGAGTGTTAGTTGGGAAAGGTGGCTTTCGTGGAAATGTTTTGAGGGTTGCACCCC CACTTTGCTTCACTAAGGAAGATGCAGATTTTCTTGTAGATGTGATGGATTACACAATGTCAAAGATGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0106300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLPQHLCKRSVWNQICGWQRRVFSAIAPSNEDGGSHFLPQMPHFSHTPAPYNGPSGSDLLKKRKQYLPTSAGPYYTHPLN LVEGKMQYVFDESGRRYLDAYGGIATVSCGHCHPDIVDAIVNQTKLLQHTTVLYLNHTVIDFAEALAAKFPGELKAVFFT NSGTEANELAMMIARLYTGFHDIISIRNGYHGNATSTMGATAQFYHKFNVVQTGTHHALNPDPYRGVFGSDGAKYANDVQ DIIDYGTFGHVAGFIAEAIQGVGGVMELAPGYLPAVYSIIKKAGGLFIADEVQSGFGRTGSHFWGFEAHGVIPDIVTLAK GIGNGAPIGAVVTTPEIAKVLTYGYYFSTFGGNLVSSAAGLAVLNVIEKDKLQQNALNVGSYLKERLNSLMEKHEIIGDV RGRGLMLGVELVKDRQLKTPAKDETLQILEQMKDMGVLVGKGGFRGNVLRVAPPLCFTKEDADFLVDVMDYTMSKM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45688
27 476 450 3.4E-277 –
PANTHER
PTHR45688:SF8
27 476 450 3.4E-277 –
PIRSF
PIRSF000521
38 198 161 4.1E-8
IPR005814
Gene3D
G3DSA:3.90.1150.10
53 468 416 9.8E-141
IPR015422
CDD
cd00610
59 470 412 1.52579E-154
IPR005814
SUPERFAMILY
SSF53383
73 473 401 8.32E-119
IPR015424
Pfam
PF00202
77 470 394 3.6E-97
IPR005814
Gene3D
G3DSA:3.40.640.10
113 371 259 9.8E-141
IPR015421
PIRSF
PIRSF000521
181 476 296 2.1E-34
IPR005814
ProSitePatterns
PS00600
287 325 39 -
IPR005814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0106300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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