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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0106400 |
| Transcript ID | LotjaGi6g1v0106400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G30300.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|I1MZT7|I1MZT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0106400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23754768..23756928) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGTGATGCACCTTTTTCACCGAAAGCCACAAGTTTCTGTGCAAGTTCCCTCCTGCATGGTTTAACTTGTGGCCTTC TCCTTGAAGCTTATTCCACCAATCACCATGCCTTCTACTACTCTTAAATGGCTAAGCCTTGTGGCCATTATTTGGTTCCA AGCCATAAATGGGACAAACACCGATTTCCCTGCTTACTCTTCCCAGTTGAAGGAGCTTCTTTCTATTTCCCAAGTGCATC TCAATAACCTTTCTTTTGCCTCTGATGCAGGGAAACTTTTTGGCTGGTTTTCTGGCCTTGCTTCTCTTTACCTACCTCTC TGGCTTGTCCTCGTAATCGGTTCGATTCTCGGATTAATCGGCTATGGAGTGCAATATCTCTTCATAACAAACCACATTGC CTCTCTATCATATTGGCATGTTTTCTTGCTAACTTTTCTGGCTGGAAATAGCATTTGTTGGATCAACACAGTTTGCTTTG TTGTTGCCATAAGAAACTTTCAATCTGATAGTCAAGTTGCTGTGGGGTTAACAAGCAGTTACCAAGGACTAAGTGCAAAG ATTTATACCAATATTGTTGAAGCTGTTTCTCCACACAAAAAAGCTAGAACCTTTCTCTTCCTGAACTCTCTCATACCAGT GGTATTTAGCTTAATAGCAGCTCCTTTTGTCAGAGAAATTGAATCCACAAGTTCCAAGAACACAAGTGTTGGGTTTGCTG TTATGTTTGTTATCACAATTGGCACTGGAATATATGCTGTGATGAGCAGCTTGCAATTTGTCACAAGCAAAACTTCCTCA CTTGGAATCCTGATTGGTCTTGTAGTGTCCCTTCTCTTGCTTCTACTAGTCCCAGTTTCTGTGAAGATGAAGGAACTAGC AGGGTCATGTCACAAAAATTGGGAAAGACTTGGAGTCTACTATTTTACTATGGAGGAGGGTACTAATGGAGAGAGGGTGA AAGAGGGTGAACATAGAATAGAAGTTTCAGAGGTTGGTGTTATGGAGGAAATTGGAGTGAAATTAATGCTCAGAAGAGTA AATTTCTGGTTATATTTCTTTGTCTATCTTTTTGGAGCAACAATTGGTTTAGTTTTTCTTAATAACTTGGGACAAATAGC TGAATCCAGGGGTTGCTCTGCCACTTCATCTTTGGTGTCTCTATCTTCATCTTTTGGGTTCTTCGGCCGTCTCATACCGT CTCTCATGGATTACTTCTATAGGTATCGTGTTAAACTCTAAACCCTAAACATTTCGTATCTATATTTGTCAACATAAATT TTCATTGATTTCACCTATTAAATATATATATTTCAGTCACAAATAGCGACCGATTTTGCGATGGAATCCATGATAATTTG TTCATCCTCCATGTTTGACTTATTAGCTTGATATAAAGACCCTATAGAGACGGACACAATTTTGATGTCGATCATCTTAA TAGGAAGGATTTGATCAGTACATTTACATTTTTCATTTAATGCAAATAATGACTATGAATTTTTTGGTTGCTTTAGTTGA TGCACATTGATGAAGACAAACAAGCTGGAACATTAAAACCACTCCTTTTATTGATATGGCTTTGTTTTATTAATTTTTTC AGGGGGAAACATAAAATTTCAAGACCTGCCTCAATGGTGGTAGCGATGGCTCCAATATCAATTGCATTCTTCTTACTACT CAACAAAACAGACATTTCTCTATACACCAGCACTGCAGTGATTGGCGTGTGCACTGGAGCAATTACTTCCATAGCTGTTT CCACAACAACTGAGTTATTTGGAACCAAACATTTCTCAGTGAACCATAATGTGGTCGTGGCCAACATCCCCATTGGTTCT TTTCTATTTGGCTACTCAGCTGCACTTCTTTACCATAAGGAAGGGCATGAACATGTGAAATGCCTAGGCATGAAGTGCTA CAATCACACTTTTCTCATCTGGGGCTCCGTTAGCTTGCTTGGAACTGTCTTGGCTTTGATTCTTCATGCGAGGACTCGCA AATTTTATTCACAGAAATAATAGGATTCAAAATTTAGTGAAGACTGTAACTTTATTAAATAAGTGTACTATTATTATTCA GTCATTACTATTTTGATATGAGCACAGGATGGAAAGTTTATCTTTTCATTGTTTTGGTAAATTAACCTTAATCATTGCAA T
CDS sequence (LotjaGi6g1v0106400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTACTACTCTTAAATGGCTAAGCCTTGTGGCCATTATTTGGTTCCAAGCCATAAATGGGACAAACACCGATTT CCCTGCTTACTCTTCCCAGTTGAAGGAGCTTCTTTCTATTTCCCAAGTGCATCTCAATAACCTTTCTTTTGCCTCTGATG CAGGGAAACTTTTTGGCTGGTTTTCTGGCCTTGCTTCTCTTTACCTACCTCTCTGGCTTGTCCTCGTAATCGGTTCGATT CTCGGATTAATCGGCTATGGAGTGCAATATCTCTTCATAACAAACCACATTGCCTCTCTATCATATTGGCATGTTTTCTT GCTAACTTTTCTGGCTGGAAATAGCATTTGTTGGATCAACACAGTTTGCTTTGTTGTTGCCATAAGAAACTTTCAATCTG ATAGTCAAGTTGCTGTGGGGTTAACAAGCAGTTACCAAGGACTAAGTGCAAAGATTTATACCAATATTGTTGAAGCTGTT TCTCCACACAAAAAAGCTAGAACCTTTCTCTTCCTGAACTCTCTCATACCAGTGGTATTTAGCTTAATAGCAGCTCCTTT TGTCAGAGAAATTGAATCCACAAGTTCCAAGAACACAAGTGTTGGGTTTGCTGTTATGTTTGTTATCACAATTGGCACTG GAATATATGCTGTGATGAGCAGCTTGCAATTTGTCACAAGCAAAACTTCCTCACTTGGAATCCTGATTGGTCTTGTAGTG TCCCTTCTCTTGCTTCTACTAGTCCCAGTTTCTGTGAAGATGAAGGAACTAGCAGGGTCATGTCACAAAAATTGGGAAAG ACTTGGAGTCTACTATTTTACTATGGAGGAGGGTACTAATGGAGAGAGGGTGAAAGAGGGTGAACATAGAATAGAAGTTT CAGAGGTTGGTGTTATGGAGGAAATTGGAGTGAAATTAATGCTCAGAAGAGTAAATTTCTGGTTATATTTCTTTGTCTAT CTTTTTGGAGCAACAATTGGTTTAGTTTTTCTTAATAACTTGGGACAAATAGCTGAATCCAGGGGTTGCTCTGCCACTTC ATCTTTGGTGTCTCTATCTTCATCTTTTGGGTTCTTCGGCCGTCTCATACCGTCTCTCATGGATTACTTCTATAGGGGGA AACATAAAATTTCAAGACCTGCCTCAATGGTGGTAGCGATGGCTCCAATATCAATTGCATTCTTCTTACTACTCAACAAA ACAGACATTTCTCTATACACCAGCACTGCAGTGATTGGCGTGTGCACTGGAGCAATTACTTCCATAGCTGTTTCCACAAC AACTGAGTTATTTGGAACCAAACATTTCTCAGTGAACCATAATGTGGTCGTGGCCAACATCCCCATTGGTTCTTTTCTAT TTGGCTACTCAGCTGCACTTCTTTACCATAAGGAAGGGCATGAACATGTGAAATGCCTAGGCATGAAGTGCTACAATCAC ACTTTTCTCATCTGGGGCTCCGTTAGCTTGCTTGGAACTGTCTTGGCTTTGATTCTTCATGCGAGGACTCGCAAATTTTA TTCACAGAAATAA
Protein sequence (LotjaGi6g1v0106400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSTTLKWLSLVAIIWFQAINGTNTDFPAYSSQLKELLSISQVHLNNLSFASDAGKLFGWFSGLASLYLPLWLVLVIGSI LGLIGYGVQYLFITNHIASLSYWHVFLLTFLAGNSICWINTVCFVVAIRNFQSDSQVAVGLTSSYQGLSAKIYTNIVEAV SPHKKARTFLFLNSLIPVVFSLIAAPFVREIESTSSKNTSVGFAVMFVITIGTGIYAVMSSLQFVTSKTSSLGILIGLVV SLLLLLLVPVSVKMKELAGSCHKNWERLGVYYFTMEEGTNGERVKEGEHRIEVSEVGVMEEIGVKLMLRRVNFWLYFFVY LFGATIGLVFLNNLGQIAESRGCSATSSLVSLSSSFGFFGRLIPSLMDYFYRGKHKISRPASMVVAMAPISIAFFLLLNK TDISLYTSTAVIGVCTGAITSIAVSTTTELFGTKHFSVNHNVVVANIPIGSFLFGYSAALLYHKEGHEHVKCLGMKCYNH TFLIWGSVSLLGTVLALILHARTRKFYSQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 509 | 509 | 2.6E-237 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 509 | 509 | 2.6E-237 | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| CDD | 6 | 493 | 488 | 3.344E-89 | – | |
| Pfam | 7 | 252 | 246 | 8.5E-77 | ||
| SUPERFAMILY | 7 | 505 | 499 | 4.71E-17 | ||
| Phobius | 9 | 17 | 9 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 66 | 44 | - | – | |
| Phobius | 67 | 93 | 27 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 94 | 104 | 11 | - | – | |
| Phobius | 105 | 128 | 24 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 129 | 168 | 40 | - | – | |
| TMHMM | 169 | 188 | 20 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 199 | 11 | - | – | |
| Phobius | 200 | 219 | 20 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 231 | 250 | 20 | - | – | |
| Phobius | 251 | 312 | 62 | - | – | |
| Gene3D | 299 | 506 | 208 | 6.8E-10 | – | |
| Phobius | 313 | 331 | 19 | - | – | |
| TMHMM | 313 | 335 | 23 | - | – | |
| Phobius | 332 | 350 | 19 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 351 | 371 | 21 | - | – | |
| Phobius | 372 | 379 | 8 | - | – | |
| TMHMM | 379 | 398 | 20 | - | – | |
| Phobius | 380 | 398 | 19 | - | – | |
| Phobius | 399 | 409 | 11 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 410 | 431 | 22 | - | – | |
| Phobius | 432 | 442 | 11 | - | – | |
| TMHMM | 442 | 461 | 20 | - | – | |
| Phobius | 443 | 462 | 20 | - | – | |
| Phobius | 463 | 481 | 19 | - | – | |
| TMHMM | 482 | 501 | 20 | - | – | |
| Phobius | 482 | 501 | 20 | - | – | |
| Phobius | 502 | 510 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0106400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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