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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132200 |
| Transcript ID | LotjaGi6g1v0132200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07820.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q40312|PGLR_MEDSA Polygalacturonase; TrEMBL-Plants: tr|V7C552|V7C552_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0132200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38130345..38132304) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGGCATAGAAAACAAGGGAAGTCAAAATGGAAATGCAAATAAAGTTAACCACATTCTCTTTATTGTTATTGCTAGCT TCTTCTGTGAGAGCTCAACCTAGGGTATTTGATGTGACAAAATATGGAGCAGCACCTAATGGAGACTTAACTCAGGTAAT TAAGATCTTACCGAGTTTACGTAATTAAAAGCAAACTTTATAAATTTTATGTTTCTTCATATGATCTTATCTTAATTTTG TGTTCTGTTTGTTCTGAAGGCTTTGGCTAATGCTTGGAAAGATGCATGTGCATCACTAACTCCAAGCAAGGTTGTGGTCC CTGGAGGCATATACAAGTTAAATCAAATAGAACTTAAAGGACCTTGTGGGGCTCCTATTGAGGTTCAGGTTGATGCAACA ATTCTAGCACCACAAGACCCAAGCCACCTTAATGGAGATACTCAATGGATTAAATTTACCTATATTAATTTCCTTACCTT GTCTGGTGGGGGAACTTTTGATGGTCAAGGTGCAATTGCATGGACCAAAAGTACTTGTGGTAAAATGAAGCATTGCAAGC AACTATCCATGGTAACGAATGACTCAATTTCTCCGCATTGCAACTAGTAACTTAAATTTTGGATGCTCGCCTAGGCAGCA GAATAATAAGTATTGTATAGAAGTTTTGATTAATTTAACCTTTTATGAATCAATCTGAATCATTTAATATAAAAATCAAA TAATAAGAGTTCACAGTAGATAGTTGTAGAGAATATGCATGCAGAAAATCCATGTTAAGTAATTATAAAATGAATTTTTC ATCCAACTCTAATGTATTAATTGGGTTTTTTTATGAATATTCCTGTAGAATTTCGGCTTTGGTTTCCTCAATAATACGAT TATCCGGGACATAACATCAAAGGATAGCAAATATTTCCATGTCAATGTTCTCGGTTGCAACAACATTACATTTATAAACT TCCACGCTATTGCACCTGGAAATAGCCCAAACACTGATGGAATCCACATTGGAAGATCAACTCTAGTGAACATTACTAAC ACAAACATTGCTACTGGCGATGATTGCATCTCTTTGGGTGATGGCAGCAAACAGATTAATGTCTTAAATGTGACATGCGG ACCCGGACATGGCATTAGTGTTGGAAGCCTCGGAAAGTATCCAAATGAAGAACCTGTAGAGGGTATCACAGTCAGAAATT GCACACTCAACAACACAGATAATGGTGTGAGGATCAAGACTTGGCCTGGTACTCCAGGAGCTATTACAGTGTCTGATTTG CATTTTGAGGACATTGCCATGTTTAATGTCAGGAACCCTGTAATTATAGATCAAGAGTACTGCCCTTGGAACCAATGCAC AAAACAGGTATTTAACATAAGTCACCGTTGATTATTTCAATTAAATGTAAGGTAACATGCAAATTTTGGTAGCTAAATGA GTACACAACTTGAAAATGCTAAATTAGAATAGCATTCTTATATATTTGAACTAAATTTAGTTTTTTTTTTCTTTAGAGAT TTGATCATGTTACTCTATATATTCCAGGAACTAACTGATATTGTTTTTTCCTCTGTTTTTCTTTTGTGTTTGTATGTGAC TTTTAGACTCCATCAAAAATCAAAATCAGTAAGGTTACCTTCAAAAACATTTATGGCTCTTCTGCGACTCCAGAAGGAAT CATTCTCATTTGTAGCAGTGGTGTACCATGTGAAGATGTGGTGCTTAGCAACATAGATCTCACATTCAATGGAACCAATT CTGCTGCTAAATTTGCTAATGTCAAACCCATAATTCAGGGGAAAATACCTTCTATCGATTCGTCGCCTGGAGTTTCGCCT GCAGGACTTGGTGACTAATGAGCACCTTCTCTTACGGGCTTTGAACATTTCTCTTTAATTCTGTATATGATCCTGGAAAT AATTAACCCTTTGTAAATTGTAATCCTTGGCAAACCAATA
CDS sequence (LotjaGi6g1v0132200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGCAAATAAAGTTAACCACATTCTCTTTATTGTTATTGCTAGCTTCTTCTGTGAGAGCTCAACCTAGGGTATT TGATGTGACAAAATATGGAGCAGCACCTAATGGAGACTTAACTCAGGCTTTGGCTAATGCTTGGAAAGATGCATGTGCAT CACTAACTCCAAGCAAGGTTGTGGTCCCTGGAGGCATATACAAGTTAAATCAAATAGAACTTAAAGGACCTTGTGGGGCT CCTATTGAGGTTCAGGTTGATGCAACAATTCTAGCACCACAAGACCCAAGCCACCTTAATGGAGATACTCAATGGATTAA ATTTACCTATATTAATTTCCTTACCTTGTCTGGTGGGGGAACTTTTGATGGTCAAGGTGCAATTGCATGGACCAAAAGTA CTTGTGGTAAAATGAAGCATTGCAAGCAACTATCCATGAATTTCGGCTTTGGTTTCCTCAATAATACGATTATCCGGGAC ATAACATCAAAGGATAGCAAATATTTCCATGTCAATGTTCTCGGTTGCAACAACATTACATTTATAAACTTCCACGCTAT TGCACCTGGAAATAGCCCAAACACTGATGGAATCCACATTGGAAGATCAACTCTAGTGAACATTACTAACACAAACATTG CTACTGGCGATGATTGCATCTCTTTGGGTGATGGCAGCAAACAGATTAATGTCTTAAATGTGACATGCGGACCCGGACAT GGCATTAGTGTTGGAAGCCTCGGAAAGTATCCAAATGAAGAACCTGTAGAGGGTATCACAGTCAGAAATTGCACACTCAA CAACACAGATAATGGTGTGAGGATCAAGACTTGGCCTGGTACTCCAGGAGCTATTACAGTGTCTGATTTGCATTTTGAGG ACATTGCCATGTTTAATGTCAGGAACCCTGTAATTATAGATCAAGAGTACTGCCCTTGGAACCAATGCACAAAACAGACT CCATCAAAAATCAAAATCAGTAAGGTTACCTTCAAAAACATTTATGGCTCTTCTGCGACTCCAGAAGGAATCATTCTCAT TTGTAGCAGTGGTGTACCATGTGAAGATGTGGTGCTTAGCAACATAGATCTCACATTCAATGGAACCAATTCTGCTGCTA AATTTGCTAATGTCAAACCCATAATTCAGGGGAAAATACCTTCTATCGATTCGTCGCCTGGAGTTTCGCCTGCAGGACTT GGTGACTAA
Protein sequence (LotjaGi6g1v0132200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMQIKLTTFSLLLLLASSVRAQPRVFDVTKYGAAPNGDLTQALANAWKDACASLTPSKVVVPGGIYKLNQIELKGPCGA PIEVQVDATILAPQDPSHLNGDTQWIKFTYINFLTLSGGGTFDGQGAIAWTKSTCGKMKHCKQLSMNFGFGFLNNTIIRD ITSKDSKYFHVNVLGCNNITFINFHAIAPGNSPNTDGIHIGRSTLVNITNTNIATGDDCISLGDGSKQINVLNVTCGPGH GISVGSLGKYPNEEPVEGITVRNCTLNNTDNGVRIKTWPGTPGAITVSDLHFEDIAMFNVRNPVIIDQEYCPWNQCTKQT PSKIKISKVTFKNIYGSSATPEGIILICSSGVPCEDVVLSNIDLTFNGTNSAAKFANVKPIIQGKIPSIDSSPGVSPAGL GD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| SUPERFAMILY | 10 | 386 | 377 | 2.51E-112 | ||
| Gene3D | 14 | 390 | 377 | 2.5E-110 | ||
| PANTHER | 16 | 365 | 350 | 6.9E-133 | – | |
| PANTHER | 16 | 365 | 350 | 6.9E-133 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 402 | 380 | - | – | |
| Pfam | 52 | 379 | 328 | 1.3E-97 | ||
| SMART | 176 | 202 | 27 | 230.0 | ||
| SMART | 203 | 224 | 22 | 3200.0 | ||
| ProSitePatterns | 233 | 246 | 14 | - | ||
| SMART | 256 | 277 | 22 | 0.51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0132200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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