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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0134200 |
| Transcript ID | LotjaGi6g1v0134200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|A0A0B2PAN8|A0A0B2PAN8_GLYSO Helicase SKI2W; Found in the gene: LotjaGi6g1v0134200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38750992..38752236) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCCAGAATCAGTGTCATGGGTGTATAAAATTGGAAGAACACCTAAAGTTAGCAAAAGAGATAAAAACACACAAAGA TGAAGTTTATGAACTTCAGTTTCAAATGTCAGATGGTGCACTTAAACAGATGCCAGACTTTCAGGGCCGGGTACCACATT CATCTTCTTTTGGAGTTATGCTTGAAAAGAAATTCTGATAGTTTGTTTTATTCCTCAATCTTATGATGTCTTGTATTTCT TTGTACTATTTCTCCAGATAGATGTTTTGAAGGAAATTGGGTGCATTGATGAAGACCTCGTCGTTCAAATGAAAGGCCGT GTAGCTTGTGAGATGAATTCTGGGGAGGAATTGATATGTACTGAATGCTTGTTTGAGAACCAACTGGATGATCTGGAACC AGAAGAAGCAGTGGCGTTAATGTCAGCTTTTGTGTTCCAGCAGAAGAATACGTCTGAGCCTTCACTCACACCCAAGCTGG CTGAAGCGAGACATAGGTAAATTGCAATTGTCTATTTTTATGAAATGAAGTCTTCAAAAGATAAACATCCATACATAAGC TAAGTAAAAACCTAGATAATTATTTTTATGATGCACGTTTGGAACCACATTATCAGCCATATGTATGGGGGTAAGAATCA TGTTAATGTCAAAGCTCTCCCTCATAGCTTCTGGCTTGACGTGCCTACATTAGGATCCAGACACACTATATGCTGTCATT TTGTCTTTCTGCATCTTCAAAATTCAGATTGGAATCAAGATATGGATCCTAAAATGTGTTTGTTTCAGATTGTTCAAAAC AGCAATAAGACTTGGAGAGCTTCAGGCGCATTTTAATTTACCAATAAGCCCTGAGGAGTATGCCCAAGAAAATCTCAAAT GTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGTTTCCCTTCTACCAAAAATACTCCACTATTTAGTTCCATATTTT TCCATTGATTTCTGAGGAACCAATCTATGTCTTTAATGCAGGGTACTCCGTTTGCTGAGATATGTGAGCTCACTGATGTT CCTGAAGGCCTAATTGTAAGGACCATTGTCCGGTTGGACGAGACGTGTCGGGAGTTCAAAAATGCTGCAGCTATTATGGG TAATTCTGCTCTGTGCAGAAAAATGGAAATTGCTTCTAATGCAATAAAGCGTGATATTGTATTTGCAGCTAGCTTGTATG TTACCGGTGTATGATCATTTGTTCAGCATGTTATTGTTTATTTGA
CDS sequence (LotjaGi6g1v0134200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCAGAATCAGTGTCATGGGTGTATAAAATTGGAAGAACACCTAAAGTTAGCAAAAGAGATAAAAACACACAAAGA TGAAGTTTATGAACTTCAGTTTCAAATGTCAGATGGTGCACTTAAACAGATGCCAGACTTTCAGGGCCGGATAGATGTTT TGAAGGAAATTGGGTGCATTGATGAAGACCTCGTCGTTCAAATGAAAGGCCGTGTAGCTTGTGAGATGAATTCTGGGGAG GAATTGATATGTACTGAATGCTTGTTTGAGAACCAACTGGATGATCTGGAACCAGAAGAAGCAGTGGCGTTAATGTCAGC TTTTGTGTTCCAGCAGAAGAATACGTCTGAGCCTTCACTCACACCCAAGCTGGCTGAAGCGAGACATAGATTGTTCAAAA CAGCAATAAGACTTGGAGAGCTTCAGGCGCATTTTAATTTACCAATAAGCCCTGAGGAGTATGCCCAAGAAAATCTCAAA TGTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCGTTTGCTGAGATATGTGAGCTCACTGATGTTCCTGA AGGCCTAATTGTAAGGACCATTGTCCGGTTGGACGAGACGTGTCGGGAGTTCAAAAATGCTGCAGCTATTATGGGTAATT CTGCTCTGTGCAGAAAAATGGAAATTGCTTCTAATGCAATAAAGCGTGATATTGTATTTGCAGCTAGCTTGTATGTTACC GGTGTATGA
Protein sequence (LotjaGi6g1v0134200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQNQCHGCIKLEEHLKLAKEIKTHKDEVYELQFQMSDGALKQMPDFQGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGE ELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLAEARHRLFKTAIRLGELQAHFNLPISPEEYAQENLK CGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCRKMEIASNAIKRDIVFAASLYVT GV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 2.1E-157 | – | |
| PANTHER | 1 | 240 | 240 | 2.1E-157 | – | |
| Gene3D | 2 | 38 | 37 | 1.9E-85 | – | |
| Gene3D | 39 | 230 | 192 | 1.9E-85 | – | |
| SMART | 61 | 239 | 179 | 2.8E-86 | ||
| Pfam | 65 | 234 | 170 | 4.0E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0134200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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