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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012961
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.198s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3329390.1
n.a. PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356527455|ref|XP_003532326.1| chr1 37641867 37652700 +
3 domain predictions
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Lj2g3v1365820.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cicer arietinum] gi|502182992|ref|XP_004517036.1| chr2 21415162 21420994 +
3 domain predictions
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Lj4g3v3015040.1
n.a. PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356523685|ref|XP_003530466.1| chr4 40307356 40314831 -
3 domain predictions
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Lj4g3v3015040.2
n.a. PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356513235|ref|XP_003525319.1| chr4 40307356 40313778 -
3 domain predictions
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Lj6g3v0622070.1
n.a. PREDICTED: helicase SKI2W-like [Glycine max] gi|356569566|ref|XP_003552970.1| chr6 6161883 6182310 +
3 domain predictions
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LotjaGi1g1v0553600.1
n.a. ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr|A0A0B2QTI2|A0A0B2QTI2_GLYSO Superkiller viralicidic activity 2-like 2; Found in the gene: LotjaGi1g1v0553600 LjG1.1_chr1 108547114 108559267 +
3 domain predictions
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LotjaGi1g1v0553600.2
n.a. ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr|V7AZU7|V7AZU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553600 LjG1.1_chr1 108547125 108557959 +
3 domain predictions
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LotjaGi2g1v0312600.1
n.a. ATP-dependent RNA helicase family protein; TAIR: AT1G70070.1 DEAD/DEAH box helicase; Swiss-Prot: sp|B9DFG3|ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15 chloroplastic; TrEMBL-Plants: tr|K7K1N0|K7K1N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312600 LjG1.1_chr2 78752282 78758783 +
3 domain predictions
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LotjaGi4g1v0439700.1
n.a. ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700 LjG1.1_chr4 81337700 81346166 -
3 domain predictions
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LotjaGi4g1v0439700.2
n.a. ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700 LjG1.1_chr4 81338415 81345976 -
3 domain predictions
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LotjaGi6g1v0134200.1
n.a. ATP-dependent RNA helicase family protein; TAIR: AT3G46960.2 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200 LjG1.1_chr6 38727012 38752561 +
3 domain predictions
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LotjaGi6g1v0134200.2
n.a. ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200 LjG1.1_chr6 38727012 38752561 +
3 domain predictions
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LotjaGi6g1v0134200.3
n.a. ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|A0A0B2PAN8|A0A0B2PAN8_GLYSO Helicase SKI2W; Found in the gene: LotjaGi6g1v0134200 LjG1.1_chr6 38750992 38752236 +
3 domain predictions
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