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LotjaGi6g1v0137000.1

Overview

Field Value
Gene ID LotjaGi6g1v0137000
Transcript ID LotjaGi6g1v0137000.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT5G56110.1 myb domain protein 103; Swiss-Prot: sp|Q9XHV0|MYB80_ARATH Transcription factor MYB80; TrEMBL-Plants: tr|V7BL43|V7BL43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0137000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:39876855..39877984) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCCGAGGAAGATAACAAGCTCTCTTC CTACATTGCTCAACACGGCACTCGCAACTGGCGTCTCATCCCCAAGAATGCTGGTTAGTCCATCTCATTTCCCTGTCTAT AAATGTATACCATTCGTATAAATTTTAACAAACTAAACTTTGATACTTGATTTTGGTTATGAAATTAAATAGGTCTCCAG AGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGTCCTGACCTTAAACATGGTCAATTCTCAGATTCAGA AGAGCAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGGTATGTTAAATGTTAATTTGTAGCCACGGGGTTGGGGG GTTTTTTTTGCCACATTGTTCCTTAAAGAATTTTCTTAAATGGATGTTCAGATGGTCACTGATAGCGGCACAACTGCCGG GACGCACTGACAATGATGTGAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTG ACCCACAAACCATTCTCCCACCTAATGGCTGAAATCGCGACAACATTGTCACCTCCTCAGGCGGCTCACCTAGCTGAAGC AGCCCTTGGCTGCTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAGTTAACTACCAGGGCCAACATTCTGCTG CAACACTGGGGAATAACATCACTGATTACTTTAACTGTAAGCCAGAAGAAAAGGACGACTCTGTGTCGAAGGCCATACAA CAAGAACCTGAAATGATACCGACATATAGACCTTGGGACTCCACTGCAACTACATCTGCAAGTTTCATGATGCCATACAG TGTTTTCCCTACAATGCCTGGGTTTCAATTCAGTCCTGCATCACCATGGAGCCAAAGTATGTGTACAGGAAGCACATGCA CAGGCACAGCCATGGATCAGCAAAGCCACCAATTACATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACA AAAGAAATTAGAAACCTATCCAATATATTCAACTCAGACTGTGTCATGTGGGATTTACCAGCAGATGATTTGATTAACCC CATGGTATAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0137000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCCGAGGAAGATAACAAGCTCTCTTC CTACATTGCTCAACACGGCACTCGCAACTGGCGTCTCATCCCCAAGAATGCTGGTCTCCAGAGATGTGGAAAGAGCTGCA GGCTAAGGTGGACTAACTACCTTCGTCCTGACCTTAAACATGGTCAATTCTCAGATTCAGAAGAGCAAACCATTGTGAAG CTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCGGCACAACTGCCGGGACGCACTGACAATGATGTGAAAAACCA CTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTGACCCACAAACCATTCTCCCACCTAATGG CTGAAATCGCGACAACATTGTCACCTCCTCAGGCGGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGATGAGGTG CTCCACCTTCTTACCAAGAAGCCAGTTAACTACCAGGGCCAACATTCTGCTGCAACACTGGGGAATAACATCACTGATTA CTTTAACTGTAAGCCAGAAGAAAAGGACGACTCTGTGTCGAAGGCCATACAACAAGAACCTGAAATGATACCGACATATA GACCTTGGGACTCCACTGCAACTACATCTGCAAGTTTCATGATGCCATACAGTGTTTTCCCTACAATGCCTGGGTTTCAA TTCAGTCCTGCATCACCATGGAGCCAAAGTATGTGTACAGGAAGCACATGCACAGGCACAGCCATGGATCAGCAAAGCCA CCAATTACATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAACCTATCCAATATAT TCAACTCAGACTGTGTCATGTGGGATTTACCAGCAGATGATTTGATTAACCCCATGGTATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0137000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVK LHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLSPPQAAHLAEAALGCFKDEV LHLLTKKPVNYQGQHSAATLGNNITDYFNCKPEEKDDSVSKAIQQEPEMIPTYRPWDSTATTSASFMMPYSVFPTMPGFQ FSPASPWSQSMCTGSTCTGTAMDQQSHQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVMWDLPADDLINPMV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF1155
4 280 277 5.5E-118 –
PANTHER
PTHR10641
4 280 277 5.5E-118
IPR015495
Gene3D
G3DSA:1.10.10.60
7 67 61 1.6E-20 –
ProSiteProfiles
PS51294
9 65 57 26.617
IPR017930
SUPERFAMILY
SSF46689
11 108 98 3.41E-29
IPR009057
SMART
SM00717
13 63 51 6.0E-14
IPR001005
Pfam
PF00249
14 61 48 1.1E-15
IPR001005
CDD
cd00167
17 61 45 8.33687E-13
IPR001005
SMART
SM00717
66 114 49 5.8E-14
IPR001005
ProSiteProfiles
PS51294
66 116 51 20.799
IPR017930
Pfam
PF00249
68 110 43 2.2E-12
IPR001005
Gene3D
G3DSA:1.10.10.60
68 128 61 8.2E-19 –
CDD
cd00167
70 112 43 3.38801E-11
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0137000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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