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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0137100 |
| Transcript ID | LotjaGi6g1v0137100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid permease; TAIR: AT1G77380.1 amino acid permease 3; Swiss-Prot: sp|Q39134|AAP3_ARATH Amino acid permease 3; TrEMBL-Plants: tr|A0A0B2RID7|A0A0B2RID7_GLYSO Putative amino acid permease 7; Found in the gene: LotjaGi6g1v0137100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39903725..39904726) extracted from Lotus japonicus Gifu genome v1.2.
GTATGGCTGGTTGCTCAAGCTCTTGGTGACATAGCATTCTCCTATCCATTCTCAGTAATTCTTATAGAAATACAGGTATG TGATTCTCTGTGATCTTAGGTTGACAGCCTTGAGGAAAAGCCTAAAGGCTAATATAACTTGCTGCAATTCTTGTAGGACA CTTTGAAGTCACCTCCACCAGAAAACATAACCATGAGGAAGGCCTCAACAATATCAGTCTTTGTCACAACAATTTTCTAC CTGTTATGTGGGTGCTTTGGTTATGCAGCCTTTGGTGACGATACACCAGGAAACCTTTTATCAGGGTTTGCAGCCTATAA GCTTCATTGGCTTGTAGACTTTGCCAATGCTTGTATAGTGATCCACCTAGTTGGTGCATATCAGGTACATCATTAAATTT CATGTTGGTGCTCCGGCTTCCATTTCTTGACAATGCTTCTTTAGTCCTTACTGATTTACTGTTAGGCCTCAACAGCCAAT GTAAAACATGCCGATATTTTTAATATGGATCAAACACGATTTGTGCTTCTTTAGTCCTTTACATTGTCCACCACTTGTCT AGAAAAGTAATGTATGTATGTTCATCTTGATCTGGTGCAGGTGTATAGCCAGCCACTTTTTGCAAATGTTGAGAGCTGGC TCCGTTTCAAGTTCCCAGACAGTGAATTTGTGAACCACACATACCTCTTGAAACTCCCAGTGCTCCCAGATCTTCAACTA AATCTTCTCAGGCTTACTTTCCGGACCGCATATGTTGCATCAACGACCTTGATTGCAATGCTCTTTCCCTACTTCAATCA GATTTTGGGAGTTTTGGCAGGCATAATCTACTATCCATTAACCATATACTTCCCAGTAGAAATGTACTTGAGTCAGGGCA ATATTCAAGCATGGACAGGCAAGTGGGTCATGCTTAGGACTTTTAGCATCGTTGGCTTTATGGTTGGATTGTTCACTCTC ATTGGATCCATTGAAGGGATAGTAAGTGCAAAACTAGGCTGA
CDS sequence (LotjaGi6g1v0137100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGGCCTCAACAATATCAGTCTTTGTCACAACAATTTTCTACCTGTTATGTGGGTGCTTTGGTTATGCAGCCTT TGGTGACGATACACCAGGAAACCTTTTATCAGGGTTTGCAGCCTATAAGCTTCATTGGCTTGTAGACTTTGCCAATGCTT GTATAGTGATCCACCTAGTTGGTGCATATCAGGTGTATAGCCAGCCACTTTTTGCAAATGTTGAGAGCTGGCTCCGTTTC AAGTTCCCAGACAGTGAATTTGTGAACCACACATACCTCTTGAAACTCCCAGTGCTCCCAGATCTTCAACTAAATCTTCT CAGGCTTACTTTCCGGACCGCATATGTTGCATCAACGACCTTGATTGCAATGCTCTTTCCCTACTTCAATCAGATTTTGG GAGTTTTGGCAGGCATAATCTACTATCCATTAACCATATACTTCCCAGTAGAAATGTACTTGAGTCAGGGCAATATTCAA GCATGGACAGGCAAGTGGGTCATGCTTAGGACTTTTAGCATCGTTGGCTTTATGGTTGGATTGTTCACTCTCATTGGATC CATTGAAGGGATAGTAAGTGCAAAACTAGGCTGA
Protein sequence (LotjaGi6g1v0137100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKASTISVFVTTIFYLLCGCFGYAAFGDDTPGNLLSGFAAYKLHWLVDFANACIVIHLVGAYQVYSQPLFANVESWLRF KFPDSEFVNHTYLLKLPVLPDLQLNLLRLTFRTAYVASTTLIAMLFPYFNQILGVLAGIIYYPLTIYFPVEMYLSQGNIQ AWTGKWVMLRTFSIVGFMVGLFTLIGSIEGIVSAKLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 191 | 191 | 5.4E-36 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 195 | 195 | 5.3E-92 | – | |
| ProSiteProfiles | 1 | 21 | 21 | 6.0 | – | |
| PANTHER | 1 | 195 | 195 | 5.3E-92 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 27 | 21 | - | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 47 | 66 | 20 | - | – | |
| Phobius | 67 | 108 | 42 | - | – | |
| Phobius | 109 | 129 | 21 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| Phobius | 135 | 154 | 20 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| Phobius | 166 | 188 | 23 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 189 | 197 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0137100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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