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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0144200 |
| Transcript ID | LotjaGi6g1v0144200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter, putative; TAIR: AT1G55910.1 zinc transporter 11 precursor; Swiss-Prot: sp|Q852F6|ZIP2_ORYSJ Zinc transporter 2; TrEMBL-Plants: tr|I1KYI4|I1KYI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0144200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41533597..41536052) extracted from Lotus japonicus Gifu genome v1.2.
CGCTTATTTAGTACCACAACCGTAGAAACCTAAAATAGTAATGAATCAATTGAAATCGCGGTAAGAAATTTTGCAGTACA CGCGCTTTTCGCTCCACCGGGGGTTGGAAATTCACCAACAGTCCAACGTAGTACACTGTCTCTCTCTCTGTCACAACCTG TGTAGTACAACGCAAATTGACTCGTATAAATCCACCCCAACACCATGCCATTGCCATCTCCGTCGCCGTTCAAATCCTCT TCTCAATGGCTCTCCCTCGCCGCATCCTCTTCTTCTCTGTTCTCTTCCTTTTCCTCTTCCTCTCTGTTTCCGCTCACAGC GGCCACCACGACGACGACGACGACGGAGACGCCGATGCCGACGGTGCTCCCGACTTACGCGCGAGGCCGTTGGTTTTGGC GAAGGTGTGGTGTCTGATTGTGATTTTCTTTGCGACGTTTGTGTCTGGGGTTTCGCCGTATGTGTTGAAGTGGAACGAGG GGTTTCTGGTTTTGGGGACTCAATTTGCTGGTGGGGTGTTTCTGGGAACTGCTATGATGCATTTTCTTAGTGATGCCAAT GAGATGTTTGGTGATTTGACTGAGAAAGAGTACCCTTTTGCGTTTATGTTGGCTTGTGCGGGATACTTGCTTACCAATCT TGTGGATTGTGTGATTTCATCTATTTTGGCAAAGTCTCGCCGTGGTGCTGATGTTGAGAGTCAAGGTATTGAGATTTCGA TTGGTTGCTTGCTGGTTAAATTGTCATATTGAATTGTTTGCTTTTGAAAACCATGTTTTCTTTTTTCATGTTTTTGAACA GTAGATTAAATTAGGTGAGGAGATGATCAAAAATGTTTTTGAACAGTGTAATGGGATAAAATACTATAGTTTCATGAATT TTAGACTGATTGGTTGAAGTTAGTTGTGTCTTCTGATCATGCAATTCCATTTGATTTTGAAAATCAGTTTTTTTTTCCTG CTCTTGAAGTGTGTTATTAGTTATTACTATTTGGGATGATATGATTGCAAGGAGCATGATTCTCCTTACATACTAAGATT ACAATTTGCATGTACCCCATGTTTTTTGATAGAGATTTCAAGGTGTAAAGAAAGTTGCCTGTTATGATGATTGAATGCCA GAAAAGAAAACACTGTTTGCTTTATTTCTGTGTGATTGTTTGGGTGATAGTAAGCCAGTAGTTGACATCAGAATTTCCTT AGTATTGTACTGTACAGGATACTACATGTGTTGTTCTATAGTGGAAATTTTTTAGTTTGTCATCGCTATCTGAGAACATA GATTTCGGAACGAAACCTTCTCTCCCGATTTCGTCTCATTCCCGGTTTCACCAATCAAATTGTGTCACGGTGGAATAGGG AATGAGACACTAGATGGGAACTGAGATTCTTCATCCATAGATTTCGTGTATTTTCCACCCAAAGCTACTAATTTGAGCTA ACGGAATATGCAATTCTGCTAGAGTTTTTCAAACACGCACTTAACAAATATGAATCTGTATTTGAACATTCACCTTGTCT AACACAAAGCTACTTAATTTGTTTTCTGGTTGCAGGGGATGAGACAGGCAAAGAAAGTGGCAATGGTGTTACTTCCCAGT CACAACACCACTCAGGAAACCATCATGCTATTGTATCTGTGAGTTCACTTGGAGACACCATCTTGTTGATTGTTGCCCTG TGTGCTCACTCAGTATTTGAGGGCTTAGCAATTGGAGTTGCTGAGACAAAAGAAGATGCTTGGAAAGCTTTATGGACAAT CTGTCTGCACAAGATATTTGCAGCCATTGCCATGGGAATTGCTCTCCTCAGGATGATTCCTGATCGCCCCCTAGTGTCTT GTGCAATCTATGCTTTTGCTTTTGCTATCTCCAGTCCAATTGGTGTAGCCATTGGAATTATACTAGATGCTACAACACAA GGTCATGTGGCAGATTGGATCTTTGCTATATCAATGGGTCTAGCTTGTGGAGTCTTTGTCTATGTATCAATTAACCATCT ATTGGCAAAAGGGTACGTGCCTCAGAAACCAACAAAGGTTGACTCAGCCTATTTCAAGTTTCTTGCTGTTGTGTTGGGCG TTGGAGTGATAGCGGTTGTGATGATTTGGGACACTTGAAGTCATTCAGAAGCAAGGGTATTATAGTAGCTTAGTTCTGCT CTGGAAATTCCATGATATCTTTCTCTTTACCCCTACGCAAAATCTTTGTAAGATAGACAAATTGATTAATATTTACACGT TTTGCAAGATAGACAGTTGGATTTGTTTTTAGGACAAAAGTTACATACAATTTAATGTGTGTAATTTTTACCGTTGATCA AACGGTAGTTCAAGAAATTATCACAATAATAAAATATTAAGATTGTGGGTACTTGGTAGTGTTATTTTTATAAGCAACAC TCAATATTATACTAAGGTAGCGTTTGGTAGGTGGGAAGGGAACGGAACGGGACACA
CDS sequence (LotjaGi6g1v0144200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCCCTCGCCGCATCCTCTTCTTCTCTGTTCTCTTCCTTTTCCTCTTCCTCTCTGTTTCCGCTCACAGCGGCCA CCACGACGACGACGACGACGGAGACGCCGATGCCGACGGTGCTCCCGACTTACGCGCGAGGCCGTTGGTTTTGGCGAAGG TGTGGTGTCTGATTGTGATTTTCTTTGCGACGTTTGTGTCTGGGGTTTCGCCGTATGTGTTGAAGTGGAACGAGGGGTTT CTGGTTTTGGGGACTCAATTTGCTGGTGGGGTGTTTCTGGGAACTGCTATGATGCATTTTCTTAGTGATGCCAATGAGAT GTTTGGTGATTTGACTGAGAAAGAGTACCCTTTTGCGTTTATGTTGGCTTGTGCGGGATACTTGCTTACCAATCTTGTGG ATTGTGTGATTTCATCTATTTTGGCAAAGTCTCGCCGTGGTGCTGATGTTGAGAGTCAAGGGGATGAGACAGGCAAAGAA AGTGGCAATGGTGTTACTTCCCAGTCACAACACCACTCAGGAAACCATCATGCTATTGTATCTGTGAGTTCACTTGGAGA CACCATCTTGTTGATTGTTGCCCTGTGTGCTCACTCAGTATTTGAGGGCTTAGCAATTGGAGTTGCTGAGACAAAAGAAG ATGCTTGGAAAGCTTTATGGACAATCTGTCTGCACAAGATATTTGCAGCCATTGCCATGGGAATTGCTCTCCTCAGGATG ATTCCTGATCGCCCCCTAGTGTCTTGTGCAATCTATGCTTTTGCTTTTGCTATCTCCAGTCCAATTGGTGTAGCCATTGG AATTATACTAGATGCTACAACACAAGGTCATGTGGCAGATTGGATCTTTGCTATATCAATGGGTCTAGCTTGTGGAGTCT TTGTCTATGTATCAATTAACCATCTATTGGCAAAAGGGTACGTGCCTCAGAAACCAACAAAGGTTGACTCAGCCTATTTC AAGTTTCTTGCTGTTGTGTTGGGCGTTGGAGTGATAGCGGTTGTGATGATTTGGGACACTTGA
Protein sequence (LotjaGi6g1v0144200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALPRRILFFSVLFLFLFLSVSAHSGHHDDDDDGDADADGAPDLRARPLVLAKVWCLIVIFFATFVSGVSPYVLKWNEGF LVLGTQFAGGVFLGTAMMHFLSDANEMFGDLTEKEYPFAFMLACAGYLLTNLVDCVISSILAKSRRGADVESQGDETGKE SGNGVTSQSQHHSGNHHAIVSVSSLGDTILLIVALCAHSVFEGLAIGVAETKEDAWKALWTICLHKIFAAIAMGIALLRM IPDRPLVSCAIYAFAFAISSPIGVAIGIILDATTQGHVADWIFAISMGLACGVFVYVSINHLLAKGYVPQKPTKVDSAYF KFLAVVLGVGVIAVVMIWDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 25 | 6 | - | – | |
| PANTHER | 26 | 339 | 314 | 2.1E-154 | – | |
| PANTHER | 26 | 339 | 314 | 2.1E-154 | – | |
| Phobius | 26 | 48 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 49 | 73 | 25 | - | – | |
| Pfam | 51 | 335 | 285 | 1.6E-48 | ||
| Phobius | 74 | 79 | 6 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 80 | 101 | 22 | - | – | |
| Phobius | 102 | 115 | 14 | - | – | |
| Phobius | 116 | 137 | 22 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 138 | 188 | 51 | - | – | |
| MobiDBLite | 151 | 173 | 23 | - | – | |
| MobiDBLite | 157 | 173 | 17 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 189 | 209 | 21 | - | – | |
| Phobius | 210 | 214 | 5 | - | – | |
| Phobius | 215 | 238 | 24 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 250 | 269 | 20 | - | – | |
| Phobius | 270 | 280 | 11 | - | – | |
| Phobius | 281 | 299 | 19 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 300 | 318 | 19 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 319 | 338 | 20 | - | – | |
| Phobius | 339 | 340 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0144200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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