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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0144300 |
| Transcript ID | LotjaGi6g1v0144300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L19, putative; TAIR: AT4G11630.1 Ribosomal protein L19 family protein; Swiss-Prot: sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic; TrEMBL-Plants: tr|I3SL49|I3SL49_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0144300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41539333..41544715) extracted from Lotus japonicus Gifu genome v1.2.
CGTTAATCAGGCCCAAACTGGAACAGATGCACACTTGCACTCTCATATCGTGAATCATAAACCCTAACCCCTGAGTTTCC CTTCTCACCTTCTCCTTCTCCACCACTCGGACATGGCTTCACGGAGACTATTATCGTCTCTACTCCGATCACCCCTCACC CGATCTCCGCCGCATTTTCAATCTCCGATCTCTTCCCGGCCATTCTCCTCCCCGAAACTCGCTTCTCCTCCTTCTCCGGC CGCCGTAAGCATCACTTCATCTCGTTCATTTCCCACATTTTCATTTCATTATAGATTTATACAATTTCATGATGCAGCAT AATGTTACAGTATGTACTCGATTTGCTTATTATGATCCTGAAGTGTGATTCAAAGCAAGCTTGTTAAATTACAGATCATA ATATCACCATCAATTATGTATAATATGCTCTGTAATAATATTAATATCAATTGATTGAATATTGGATAAATGAAGAAAAT GGCATAATTATTTTGAGCAATTTCTTTGGTAGCTGCTTCCATACCTTTTGCTGTGATTTTTCATGATTTATTTTGGGATA ATGATTCATGGACCGAAAACTATTTTTGACGAAACCAACGAATCAATTTACTTCCGTTTATCTCACTTGATTTTGTTTCA CTTGTAGTTTTGTAACTACCCAAATCTCTTTGACTCATTTCCGAACCACATGTTCGTAAATTTCGTTTCTCAATTCCATT GTAACGTATAGCATTGCTCTTTATTTTGTAATAAATTTTTAAAATTTGCATCTTTGTGCTTTATAGTCTAAATAGTGAAT TGAAGGGTACTGAACCCTCTCATTTTCAAGGGTGCCGGAGAAATGCCCATTATTTAGAGCCTTCAAGTGTTGTGTTGTTT CTGTTGAATATCTGTTTAGATTTAGTTTACTATTAGTCTTATCTCATTGAGATATAGTTTAGATTTGTTTCTCTATTTTA GATTAGTATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAGGTTTAGATAGATTTAGTTTCTTTTTATCTATT TGTTAGTCTATATATGTTGTAGTCTAGTCAAGTATTATCAATGAAATACAAGTATTATTTTATCAAATTCAAGTTGGTGT CAGAGCGAGTTTCGATCCTACCGCTGTGAGGGGGCTCCTCCCCCGTGAGCCCCCTCATGGTGACCTTCCAAATCTCTTTG GATTATTTTCACTCGTCCTGTGCTTCCGCGCTTGTTCGTTCTAGCCTTTTCTTACGGCCTCGTTTCTTTCTGATTATGGT CCCCTTTGTCTTGGAACCCTATTGACCCTTGTTTCTTAATACTTAAAACAACCGCGCCTTCTTCTTCGGCGCGTGAAGGT AACGCACAAACCTGAACTCGACACGACGACCACATACATGTTCGTCCGTTGTAGTATAGTTGGTCAGGATATTTGGCTCT CCCTCCTGGTTCTGTTCCAGATGTTGTTTTCTCCAGATTTTCCTTCCTTTAATGCAGTTGCGTGATTGGAAGAAATTGTG GGAATTGATTCAACAATTGTTTACTCAAGAATCCTTGATTGGAATGACATAATAATTCTTCACTGCCAGCGAGAGTATTG GTTACATGAAGTGGAAATATGGAATGCCAATGCGTTGGGATGGTGATATTGGAAGTTTCTGATGATGCCAGAATGAAGCA GTACCATGTGGCTCTTTGGTCCAATCCAGTTCTCAATTAGTGTGTTGGGTTGTTCTAGTTTCTTGTTTTTGGTTTCTTGG TTTTGGTTGGCACAGTGTGGTTTTGGAGTTGGAAAAGATTTTTGCTCTCTATTAAAGTGGAGAATTGGTTTTGCATTGTG TGGTTTGTTGGTGTATAAATTTTGGACTATTTTTGGGAATATCTCTCTCCGGCAGCAGCTGCTTCTCAAGTTAATTATAT TTGTTACAAGCTATGCATATGACATATATGCGCTAGCTTGAGGGGAAGATCTGAATATTGTTAAATCTTAATTATATTTC TTACAAGCTATGCATATGACATATATGCTATAGTTTGAAGGGAAGTGTTGGATATTGCTAAATATCCTAATAGAGACCAC AGTCAACCACCGCCGACAATCGTTATCCTTGTTGCTGGTTTGGTGGAGGGTGTATTCAAGAAGTGTTTGGTTGGATCTAA TTGTATTGCGCTGCATTGTTCTCGCTGGTCCTATTTGTGTTTCGGCCAGGTTTGGTTTTTAAGGTCCTCTATTTGACGTG TGTTGTGGCGCCACCGTTAATGGTCGTCCGGTCTTCCTCTTCCAGTTTGGTTTGTGGGTCTGCTGTGTTTTCTCATCTGC GATGTTTCTTGCTGTTTGAGTTCTTAGTTTGCATCTCATGGTTCGTGATGCTCTTATTATATTGATCTTGGCTGACTTTA TGCAATTTGGTTTTGTTTGGTTTTGAAGGTGACAGTGTCACCTTCGTTTGTTTTGTCTCGATTGTTTGGTTTTCTGGTTT TAGGGCTTCATCTGCAAGTTGCGCTGGCCCACTCTCTAGTTGAGAGTTATTGGTTTTGGTTTTAGGGCTCTAGCTGCGAG TTGCGCTGGCCCGCTCTCTAATGTTTGAGAGTTGTCTGTGTCAAAGTTGACACCATTGTTTGTCTTAGAAGCCATCAATC GATCAACCTCAAGTATGTTTTATTTATGTGTGGTTGTTGTTGGTGAGTTGTTGCTTCAGCCTTGTTTTGTTTTCGGGCGT ATTGTTGCTGGTTTTTCGCCCTTGTTGTTTGCTGACTCAGCTACCCTACGACACTCCAGAAGAATTGGTTTTTGTCTTGC ATCAATTTCAGCCAGATCAAGTATGAGAAGTTGTCTTTTGCCTCCCATGGATTTAGCAGAAGTTCGAAAGATTATTCAAT TTGAAGTATGAGAAGTTGGCTTTTATCGCCATGGATTTACTAGAAGTTTGAAAGGTTATTCAATTCAGAAATTCGCCAAG ACTGTCATTATTAAGGGATATCTATTAAGATAATTTTCTTCTTGGGTTCGATTTGTTACAAGCTTAAAGCTAAGTAAGCT TTAGCTTGAGGGGGAGTGTTGAATATCTGTTTAGATTTAGTTTACTATTAGTCTTATCTCATTGAGATATAGTTTAGATT TGTTTCTCTATTTTAGATTAGTATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAGGTTTAGATAGATTTAGT TTCTTTTTATCTATTTGTTAGTCTATATATATTGTAGTCTAGTCAAGTATTATCAATGAAATACAAGTATTATTTTATCA AATTCAAGTGTTTCATGCTTCTATTTTTCTTGAATCGTATGACCTTGATTTATAGGATATGAGCTCTTGTGGTGATTGGA TATTGGTGTTGTTCTTGTCATGATTTATTGTGCAGGTTAAGATATACCCTCAGACTGAGGCATTCTCAAGATTTGTGTCT GCTAATGGTTTAGCTTCTGTGCAGGGAATTTCTAAAATGGATCCATTTCGCTGCGTTGCTACGATCGCGCCTTCTTTCTG TAGCAGGTTTATGTCGACGAAGATAAACTCTGTTGATTCTTCTCAAGGGAGTTCTGCTCGGGAGCCTGAAGTGCCTGAAC GCATCAAATTTAAGAGATTAGATAAAACTGGCAGGCATATCATGCAGGCATGTGACTGCTCTGTGTCGTTTTAAACAAGC GTGTTCATTTTGTTATCGTTTGTAAAAATTGTTGATATTTATATTCTTTAGATTTTAGACAAGGAAGCAGTAGAGGAGGT GAAAGCGCAGAGACAGATGCCTGATATAAAGCCCGGTTATACAGTGCAACTCAAAGTGGTATGGGAGTTTTTATCTGATG ATTTATTCATATTTGTGCTTTGCTTGGTTCCTGTTCATTATAGTGATATGATATTTTGCTCTTTTACGTCTGATATAACA GGAAGTGCCTGAAAACAAGAGGCGTGTTTCTATTATAAAAGGCATTGTTATTGCTAGGCGTAATGCTGGCCTCAATTCAA CATTCAGAATTAGAAGGATGGTGGCTGGGGTTGGCATCGAGAATCTATTTCCACTGTGAGTATTACCTTTCCATATTTTT ATCTGATCAGCTTTGCAGATATGCTATTTTAATGGGTAAAATAGTTCACTGCTTTCAGTTTTGTTGGCTTTTGAGGAGGA TGCAGTTAAAATTGACTTGCTGAGTATCCACTCGGGGCGATGTTAATTATTTGAAATTCTAGTTGTGGGCTTGTTGTCTG TCTTTCTTCCGAAGTTTTTTTTAATTAAACTAAATCTCTAAAAAGTTGTGATGTAATCTGGTAAATTTTCATACTATAAC CAAGAAAAAATCAGTTTTAGTGCTTTCTGATTATGTAGAAGGAGTAGCTTAAAAGAGAAGCTATACCATGAAGAGTTCTT TTATCAGAACTTATTCATATGCCTTTTATATTACTTTGAGTTTAACAAAAGCATTCTTATTGCAATATACATTTTATGTG TTGTTGTGCTTGTTTGTTCACGGGATTCCGTTCAATCTGTTTTCCCCCTTGCATTATCTATTTGGAAAAAAGTGAATTAC TCTCTAAATTTATTTATAACTGTAACAATTAGTTTGGTGTGTATTCAATATTCAGAGATAGTAAATTTTTGTTTCGTTTT GAGCTTGAGTTTGAGGTGTTTCTGTATGCGCTTTGGATGACTTTTGGGGACTGTACTACTATTTGATGTGTATGCGCTTT CTCTATCCCCCATTTCATCTTGTCATATGCTTTGTCAATGACCTTTATTTTGGGGTGGCTGAAGAGGGGAGGGTTATGGT GGTGTTGTGATCTTTTAATTTTCAGTTGTTTGTGCTTGTAGTAGGCATCATATTATTTGGTGCTTAATGACTGAGCTTTG ACCTTTGTGTGATAGGTATTCACCAAACATAAAGGAGATAAAGGTGATTGACAAGAAGAAAGTGAGAAGGGCCAAACTCT ACTACCTGAGGGATAGATTGAACTTTAAAAAATAACACTGATCTTCATTCTAGCGGAAATTATTTATGATTCATAATTTT GTTATATGTGGTATCTGCGTCTATTCACTGATCATATACTTGCTGCTTTACTGTGCTCAACTATCTTTGCTCAGTGTACC TTACTATGTTGTTTAATTTCAATCCTTAGAGCCTGTCATGTTTTTGAAAGGTTAACATGTAAGAGATGCATTCATGTTAA GAATTTCTCAAAGCCATGTTATAATTTGTTTCCCTGATGTATTGAATCTGAAAAATAGGCTTGCATTTTAGCTGCCTTGT GCTTTTTTTTTTTTGACATTTGGTTAATGAAAAAAAGAAGTAATTCAAATGAGGACAAGAGTTGTCATGGTGCTTACATG ACCGGTCCACATGGGGTTTTCAC
CDS sequence (LotjaGi6g1v0144300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCACGGAGACTATTATCGTCTCTACTCCGATCACCCCTCACCCGATCTCCGCCGCATTTTCAATCTCCGATCTC TTCCCGGCCATTCTCCTCCCCGAAACTCGCTTCTCCTCCTTCTCCGGCCGCCGGAATTTCTAAAATGGATCCATTTCGCT GCGTTGCTACGATCGCGCCTTCTTTCTGTAGCAGGTTTATGTCGACGAAGATAAACTCTGTTGATTCTTCTCAAGGGAGT TCTGCTCGGGAGCCTGAAGTGCCTGAACGCATCAAATTTAAGAGATTAGATAAAACTGGCAGGCATATCATGCAGATTTT AGACAAGGAAGCAGTAGAGGAGGTGAAAGCGCAGAGACAGATGCCTGATATAAAGCCCGGTTATACAGTGCAACTCAAAG TGGAAGTGCCTGAAAACAAGAGGCGTGTTTCTATTATAAAAGGCATTGTTATTGCTAGGCGTAATGCTGGCCTCAATTCA ACATTCAGAATTAGAAGGATGGTGGCTGGGGTTGGCATCGAGAATCTATTTCCACTGTATTCACCAAACATAAAGGAGAT AAAGGTGATTGACAAGAAGAAAGTGAGAAGGGCCAAACTCTACTACCTGAGGGATAGATTGAACTTTAAAAAATAA
Protein sequence (LotjaGi6g1v0144300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRRLLSSLLRSPLTRSPPHFQSPISSRPFSSPKLASPPSPAAGISKMDPFRCVATIAPSFCSRFMSTKINSVDSSQGS SAREPEVPERIKFKRLDKTGRHIMQILDKEAVEEVKAQRQMPDIKPGYTVQLKVEVPENKRRVSIIKGIVIARRNAGLNS TFRIRRMVAGVGIENLFPLYSPNIKEIKVIDKKKVRRAKLYYLRDRLNFKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| Pfam | 1 | 43 | 43 | 8.2E-5 | ||
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| MobiDBLite | 9 | 34 | 26 | - | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| Phobius | 29 | 211 | 183 | - | – | |
| PANTHER | 55 | 208 | 154 | 2.1E-74 | – | |
| PANTHER | 55 | 208 | 154 | 2.1E-74 | ||
| Gene3D | 91 | 211 | 121 | 4.2E-17 | ||
| SUPERFAMILY | 102 | 205 | 104 | 1.5E-31 | ||
| PRINTS | 108 | 137 | 30 | 2.6E-10 | ||
| Pfam | 111 | 206 | 96 | 5.5E-32 | ||
| TIGRFAM | 112 | 206 | 95 | 1.9E-30 | ||
| PRINTS | 167 | 190 | 24 | 2.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Biological process | ATP biosynthetic process | The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi6g1v0144300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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