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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0144400 |
| Transcript ID | LotjaGi6g1v0144400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc ion-binding protein; TAIR: AT1G55915.1 zinc ion binding protein; Swiss-Prot: sp|P38838|WSS1_YEAST DNA-dependent metalloprotease WSS1; TrEMBL-Plants: tr|A0A072V797|A0A072V797_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0144400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41546265..41549006) extracted from Lotus japonicus Gifu genome v1.2.
CAACCTCGCGCGTTCTCCCAAACCTAAACAACGAAATAAAAGGGGAAAAAAAAGGGGTTTCGTTTCATCATTTCGTGTTT CGAGTTTCTCTCTATCATTCTTCTTCTCCAATCCTCATTTTTTGTTGCAATCTGCGACCCTTCATTTTCGTCACCCTCAG ATTCTTCAATCCCTCACTCTCAATTTGCATCCCCCAATTTTGGGATTTTAGGGTTCGAGACGATGAACTCAGGCGACCTC AACAAGGTTTGGGAAATCAATGCTCTGAAGAGGAAACCAAGGCCAGAAGAAGCCACAAAAATGCTGGAGAAGATCGCCAA ACAGGTCCAGCCCATCATGCGCAAACACAATTGGAGGGTCAAGCTTCTCTCTGAATTCTGGTGTTCCAAAACTTCCTCTC TTTTTTTTTTTAATTTTTTTAATTTATTATCGTGCAATTCACTTCAGTTTTGTGTTTCCTATAATGGGTAGTGAAGGAAA ATTGAAGTAATGGAGTTAGGGATAGGAAAGTTTTCAACTTGGAGTTAAAAACCACTGTTCTAATCAACCAACCATTGATA ATGTTGTAGCACAATATTAGCAGCTTTTGTGTCTCCTTAGGAACCTGAATTAAGAACTTGCCCATGTGATTATTGTAGCC CAAGCAATCCGTCGATTCCAACCAGTTTCTTAGTTTTTTTAATTTGAATTTTGCTAATCAAAACAGAAGATTATTTTGAG TAGAAACAGTGGTCTTGCTACTCATGCAGCTGTGTGATTTTGCTTTAGTGTAACACTCAAATGAATTTTGATTTTGGCTT GGGCAAGTCTATTTTGATTTTCTATTTCTGGTGGAATGACTAAAGAACTTGCCCATGTGGTTGTATTGTAGCCCGAGCAA TCCGGCTCTTCTTGGGGTGAATGTAAATGCTGGTGTAAATGTGAAGTTACGGCTACGGAGACCAAACAGGGATTCAGAAT TCTACCCATTTGATGAAGTTCTGGATACAATGCTTCATGAGCTTTGCCATAATGCCCACAGCTCTCATAATGCTGCCTTC TACAAGCTCTGGGATCAACTTAGAAAGGTTCTCCTTCTTCCTGTCATTTTGTTATTGACTAGGCAAAATGATAATTATCA GATTTCTGGCCTTTTGTGATACAGTCTCTTTGCTTTAGACAATATCCTATTGGATTTTACAGGTCCTTTAGATAATATCT TACAATAGGGCAATTTTATTAGAATAATGGCTGTAAGTTAAAACATTGATTCACCATTGGTATGATAGATCATAACACTT GTTTACTGATGTAATTCTAGGCAGAAAGTTGTGTTTTTCTTTCTTAGCAAATTGTTAGATTTGCTTATTTGCTCTCTATC AATCCATTTTACTAATTATGCATAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCTCTGGAGACGGGTTTGACG TTCCAGGGAAGCGTTTAGGTGGTAATTCCCGGCAACCTCCACTTTCATCTCTACGTAAAACTGCACTGGCAGCCGCAGAA AAGCGGTCACGATTGGGATCTCTTCTTCCATCTGGACCGAATCGTCTTGGCGGTGATAGCGCTATAATGGGGGCACTTAG TCCAGCGCAGGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGACCTATGGTGTGGTTCTCAATCTTGTGAACATT CAGATCATGAAAATGTTAACAATGAATCTGCTGAGAACATTGTACAGAAGCGGAAAATTGTTGGAAGCTCAAGATTAACA GACAATTCTACTCTACCTTCAGATCAAGTATCTAGAAAAAGAAGTTGTTCTAAGGACTCAAGTTTACCCGTTCATTCATC TGGTGCCCCGATATTTGTAAATTTAACTGCGGATGCACAAAAAATCGGATCTATCACTGAATATCAAATTGGATCTCAAC AACGAAGTTTTGGATTAGAAAGGATTTCAAATTCTCAATCTGAATCTCAGGCTGGATCTAGTTCTGCAAATTTATCAAGC CTGCCTAGGCTACTTTCTGGGGATAATAAAACATTTCATTCCGAAGAATCTGCAATGTGGGAGTGTCCGATGTGCACTCT GTTGAATCAAGTAAGCATCCAAATATACTGCATTCTTTCATTGCAGACTATGTCTGTGTTGAGTTTCCTCGTAAAATGTT GTGTTGTGGCTTTATTCATTCTAAAGTATATAATGATCACTATGGTTGTTTAACATACTGCCTTTTCTAACGCATGTAAT GGTGCTGGACCAATGCAGACATTTGCTCCTATATGTGAGTTGTGTGGCACGCAACAACCAAAAGATGTTACCACCAAGTA CAGCACTTGGTCTTGCAAATTCTGTACCTTGGATAACAGTGTGAAGATGGAGAAATGCTCAGCCTGTGACCAGTGGAGAT ATTCTCATGGCCCGCCAATGTCAGTCAACCTGGGTTCCTAACCTTGGCAATTGACAGAACTGTGTAATTTGCATATTGGA CAAATCTAATTCACTTTTGGCTTTAGTCTTCACTAATCTGTGCATAACCTTCCATTTATTCTTGGTTCTATCTTCTATAT CATGATCACATATATTTTTAAAATTTAACTTTGACATTTGATCTTTAGTTTTTCTTTGTTATACAATATTTATCTCGTAC GAAGGTAGGAATAATAATGGCCAAATGGATAAGGTTTGGATAGGATATAATAATATTTGATTCTATATTCACATTTTGAA CCTATACCCGTGTGGGTTGGAA
CDS sequence (LotjaGi6g1v0144400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCAGGCGACCTCAACAAGGTTTGGGAAATCAATGCTCTGAAGAGGAAACCAAGGCCAGAAGAAGCCACAAAAAT GCTGGAGAAGATCGCCAAACAGGTCCAGCCCATCATGCGCAAACACAATTGGAGGGTCAAGCTTCTCTCTGAATTCTGCC CGAGCAATCCGGCTCTTCTTGGGGTGAATGTAAATGCTGGTGTAAATGTGAAGTTACGGCTACGGAGACCAAACAGGGAT TCAGAATTCTACCCATTTGATGAAGTTCTGGATACAATGCTTCATGAGCTTTGCCATAATGCCCACAGCTCTCATAATGC TGCCTTCTACAAGCTCTGGGATCAACTTAGAAAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCTCTGGAGACG GGTTTGACGTTCCAGGGAAGCGTTTAGGTGGTAATTCCCGGCAACCTCCACTTTCATCTCTACGTAAAACTGCACTGGCA GCCGCAGAAAAGCGGTCACGATTGGGATCTCTTCTTCCATCTGGACCGAATCGTCTTGGCGGTGATAGCGCTATAATGGG GGCACTTAGTCCAGCGCAGGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGACCTATGGTGTGGTTCTCAATCTT GTGAACATTCAGATCATGAAAATGTTAACAATGAATCTGCTGAGAACATTGTACAGAAGCGGAAAATTGTTGGAAGCTCA AGATTAACAGACAATTCTACTCTACCTTCAGATCAAGTATCTAGAAAAAGAAGTTGTTCTAAGGACTCAAGTTTACCCGT TCATTCATCTGGTGCCCCGATATTTGTAAATTTAACTGCGGATGCACAAAAAATCGGATCTATCACTGAATATCAAATTG GATCTCAACAACGAAGTTTTGGATTAGAAAGGATTTCAAATTCTCAATCTGAATCTCAGGCTGGATCTAGTTCTGCAAAT TTATCAAGCCTGCCTAGGCTACTTTCTGGGGATAATAAAACATTTCATTCCGAAGAATCTGCAATGTGGGAGTGTCCGAT GTGCACTCTGTTGAATCAAACATTTGCTCCTATATGTGAGTTGTGTGGCACGCAACAACCAAAAGATGTTACCACCAAGT ACAGCACTTGGTCTTGCAAATTCTGTACCTTGGATAACAGTGTGAAGATGGAGAAATGCTCAGCCTGTGACCAGTGGAGA TATTCTCATGGCCCGCCAATGTCAGTCAACCTGGGTTCCTAA
Protein sequence (LotjaGi6g1v0144400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSGDLNKVWEINALKRKPRPEEATKMLEKIAKQVQPIMRKHNWRVKLLSEFCPSNPALLGVNVNAGVNVKLRLRRPNRD SEFYPFDEVLDTMLHELCHNAHSSHNAAFYKLWDQLRKECEELMAKGITGSGDGFDVPGKRLGGNSRQPPLSSLRKTALA AAEKRSRLGSLLPSGPNRLGGDSAIMGALSPAQAAAMAAERRLQDDLWCGSQSCEHSDHENVNNESAENIVQKRKIVGSS RLTDNSTLPSDQVSRKRSCSKDSSLPVHSSGAPIFVNLTADAQKIGSITEYQIGSQQRSFGLERISNSQSESQAGSSSAN LSSLPRLLSGDNKTFHSEESAMWECPMCTLLNQTFAPICELCGTQQPKDVTTKYSTWSCKFCTLDNSVKMEKCSACDQWR YSHGPPMSVNLGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 407 | 407 | 4.3E-149 | – | |
| ProSiteProfiles | 1 | 204 | 204 | 50.074 | ||
| Pfam | 8 | 204 | 197 | 8.3E-63 | ||
| CDD | 87 | 119 | 33 | 4.38807E-4 | – | |
| MobiDBLite | 134 | 154 | 21 | - | – | |
| MobiDBLite | 238 | 254 | 17 | - | – | |
| MobiDBLite | 238 | 267 | 30 | - | – | |
| MobiDBLite | 304 | 325 | 22 | - | – | |
| Gene3D | 336 | 376 | 41 | 7.3E-8 | – | |
| SUPERFAMILY | 338 | 366 | 29 | 1.04E-7 | ||
| ProSiteProfiles | 339 | 368 | 30 | 8.287 | ||
| SMART | 341 | 365 | 25 | 4.6E-4 | ||
| ProSitePatterns | 343 | 362 | 20 | - | ||
| ProSiteProfiles | 373 | 402 | 30 | 8.377 | ||
| SMART | 375 | 399 | 25 | 0.071 | ||
| ProSitePatterns | 377 | 396 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0144400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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