Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0147400 |
| Transcript ID | LotjaGi6g1v0147400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter C family protein; TAIR: AT3G13080.1 multidrug resistance-associated protein 3; Swiss-Prot: sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3; TrEMBL-Plants: tr|A0A072UX38|A0A072UX38_MEDTR Multidrug resistance protein ABC transporter family protein; Found in the gene: LotjaGi6g1v0147400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42154969..42156879) extracted from Lotus japonicus Gifu genome v1.2.
GTGCTTCTATATATGCAGCAATACTACTCAGCATCAGCACGGGAATTGGCACGATTAGTCGGTACATGCCAAGCTCCGGT TATACAACATTTCTCTGAAACGATTTCTGGGTCAACAACCATAAGAAGTTTTGAACAAGAATCAATATTTAATGACACGA ATATGAAATTGATAGACAAGTATTCCCAACCCAAATTATACAGTGCTATTGCAATGGAATGGCTGAGTTTCAGGTTGGAT CTTCTATCCTGTACCGTATTTGCCTTCTGTTTGGTGTTCTTGATATCTTTTCCAAGTTCAATTACTGATCCTGGTGAGTA GTTGAAATTACATACATTTACTTGTCACACTCCTTATAACACCAGGTATATATATAACTTCAATCCTTTTCGAACTTCAC ATGTATTTCTGTCTTAGGCATTGCGGGATTGGCAGTGACATATGGGCTTAATCTAAATTCTATACAATTTAATCTGATCC GGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCGTCCCAGGTGAAGCTCCT CTTGTAATCAAAGACAACCAACCAGATCATTCTTGGCCGTCATTTGGAGAGGTTCATATCCAGGATTTACAGGTATCTTT CAGAAGTTATTCATTTTGAATTGAATACTAGAATTAGGTCAAAATCTAGCTTAGGACTTTCAGGGTTGCTCTACCCTTTA TAAGGACTATTTTGGCCATATCTCTAATCAATGTGAGATTTAGTAACAGTATTTATCTATCTATCCTTAATGAGGCAGTG TGTGATGCAGGTTCGGTATGCTCCACACCTGCCTCTTGTTTTACGGGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAA CTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGA AAAATCTTGATAGATAACATTAACATATCTTTGATTGGACTTCATGATTTACGGTCCAAACTAAGCATTATTCCTCAGGA TCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGACCCTTTGGAAGAGTCCACAGATGAACAAGTTTGGGAGGTAA TTTAGTTTTGCTTGACACTAAGAAGAAGTTTCCGTTTTAGTCTTTAGTACCAGTACATATTAATCTATTTCATGATATAT TTTAGGCTCTAGATATGTGCCAACTTGGAGATGAAATAAGGAAGAAAGAAGGGAAGCTTGACTCCTTAGGTATGAATTCT GAAACTTTGAACAAATATGTTAGGATGTGTTACAAGTTATAATTAGATGTATAAATGTGGTGAGAATCTACTACTTACCA TGATGAGTTCTGCAGTTACTGATAATGGAGGAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGGGTTCTT CTTAAGAAAAGTAAGATTTTGGTGCTTGATGAAGCAACTGCACCAGTTGACACAGTCACAGATAATATTATTCAGCAAAC AGTTAAGCAGCATTTTTCAGAATGCACAGTCATTACAATTGCTCATAGAATAACATCAATCCTAGACAGTGACATGGTTC TGTTTCTAAATGGAGGCAAGCAATTTTTTCCCCTTTCTTCTTCTTTATTTGTCAATTTTTATTTTCTTCTCTAGCTCATA AATGTGGACCCTGGACATGGTTTCTCTTCATATTGATCCTGCAGGGCTAATTGAGGAATATGATTCACCAAAGAAACTGC TTAAGAACAAGTCTTCAGGTCTTGCTCAATTGGTTGCCGAATACACAAGGAGGTCAAACTCTGGTTTTGGAAGTTGAACT GAATCTGAATTAATGTCACCAACAATATATGTTGTTACGCAGAGATTTTACAGTTACACATATTTTCTCAG
CDS sequence (LotjaGi6g1v0147400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCAGTGTGTGATGCAGGTTCGGTATGCTCCACACCTGCCTCTTGTTTTACGGGGTCTTACTTGCACTTTTACTGC TGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCCGACTTGTTGAAC CTGTTGCTGGAAAAATCTTGATAGATAACATTAACATATCTTTGATTGGACTTCATGATTTACGGTCCAAACTAAGCATT ATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGACCCTTTGGAAGAGTCCACAGATGAACAAGT TTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAATAAGGAAGAAAGAAGGGAAGCTTGACTCCTTAGTTACTGATA ATGGAGGAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGGGTTCTTCTTAAGAAAAGTAAGATTTTGGTG CTTGATGAAGCAACTGCACCAGTTGACACAGTCACAGATAATATTATTCAGCAAACAGTTAAGCAGCATTTTTCAGAATG CACAGTCATTACAATTGCTCATAGAATAACATCAATCCTAGACAGTGACATGGTTCTGTTTCTAAATGGAGGCAAGCAAT TTTTTCCCCTTTCTTCTTCTTTATTTGTCAATTTTTATTTTCTTCTCTAG
Protein sequence (LotjaGi6g1v0147400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQCVMQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDNINISLIGLHDLRSKLSI IPQDPTMFEGTVRSNLDPLEESTDEQVWEALDMCQLGDEIRKKEGKLDSLVTDNGGNWSMGQRQLVCLGRVLLKKSKILV LDEATAPVDTVTDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNGGKQFFPLSSSLFVNFYFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 3 | 227 | 225 | 14.553 | ||
| Gene3D | 4 | 218 | 215 | 6.1E-68 | – | |
| PANTHER | 6 | 212 | 207 | 1.5E-131 | – | |
| PANTHER | 6 | 212 | 207 | 1.5E-131 | – | |
| CDD | 7 | 212 | 206 | 3.60654E-119 | – | |
| SUPERFAMILY | 8 | 212 | 205 | 1.21E-60 | ||
| Pfam | 18 | 166 | 149 | 2.0E-31 | ||
| SMART | 27 | 211 | 185 | 2.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi6g1v0147400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…