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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0156000 |
| Transcript ID | LotjaGi6g1v0156000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline synthase co-transcribed bacterial; TAIR: AT4G26860.1 Putative pyridoxal phosphate-dependent enzyme, YBL036C type; Swiss-Prot: sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein; TrEMBL-Plants: tr|A0A0S3S737|A0A0S3S737_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0156000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43542619..43545642) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCTCCTGTGATGGCGGAGGGCGTCGCCGTCACGGCGCTGCGGTCGGTGATACTCCGAGTTCAGCAGGCGGCGGA GAGAGCTGGCTCCAAACCCGATCGGGTCCGGGTCGTTGCGGTATCCAAAACCAAACCCATTTCTATGATTCGCCAACTCT ACGACGCAGGTCACCGATGCTTCGGCGAAAATTACGTCCAAGAAATTGTCGATAAAGCCCCTCAGGTGAATCTACAATTC TTTTCAGATAAAGTCCAACTTTTTTTTCAATTTTTTTCATTGATTTAGTTGAGTTGTCATAATTGAATACAAAATTTATT GATGGATATGAAGTTCTCATAATTTGGTTTTGGGGTATGGTTGCAGCTTCCACAAGACATTGATTGGCATTTCATTGGAC ATTTGCAAAGCAACAAAGTTAAAACACTTCTGGGTATGTTTTTGTTTATTAATTTATGATTTTTTTAGATACACTGATTT TGACTATTCAATCTTATATGAATGTTTAAGAGTGGTTGCAACTTGCAAGTATGATATGCTCCTTATGTGTGTGACTGTGT GTGTAATTGTGTATAATCAAATATGTTGAGTTTTGACCACTGTTTTTGAGCTTGTTATGATTGACCACATATTATGGTGT TTGAGTGGTGGTTTGCCTGTTCACTTTTTCTATCTGGACTGAGTGCAGTGTTTTTATAAATTGCTTTGGTGGGCTCTGTA TTTCTTGAAAATATTGCTAGAATTTTATTATGATATTATCTTGTTTGAGCTTGTTAGTCTGTTCCTTTCTTTAGCATCTG GTGAATGTTAAACTTGCATGCTTTGTGCAGGTGGGGTTCCAAATCTGGCCATGGTTGAGGGCGTGGACAATCCAAAGGTA GAGAGAATTTGTAATCAGCATTACTTGTAGATGTAGTTTTTGAAGATATGAATTCTTTGTTGTTTATTTATTTTTTTGAT TTGATTTGAAGGAATGTAGATAAAATGTTCTTCTTTAGTACTTGCTGTTGATAAGGCCTATAACTTGTGAATAACTGGTT AAATTTCAAATTGTGATTAGATAGAGCTAATTTTCTAACTAATGTGAAATTCTGTTTGATTTGACATACCTTAAAAGTGT TCTTGTGCCTGTGGAACTTGCAGGTGGCAAATCATCTCGACCGTATGGTTTCAACCCTTGGAAGAAATCCTCTGAAGGTC TTGGTGCAAGTAAATACCAGCGGAGAAGAATGTGAGTTCAGCTTAATAAATACTCAAAATCCTTATTATATTTTTTGGTC TCTTGAGGTTTTGCTACATCCTTTGGGTGTGATGCTCCAGGTACTTGGAATCCTTATTTTGTAGTTTCTGCATGGCTGTA ATTTTTGAACTTGTCTTCACATACCCACTCGTCTTAGTTTATCATCAGGAAGTTATTATTCATGTTTAGTTCTTCAACGT TTTCAAATATTTCCCCCCTAATCCAATGGTATACTGCCTCTTATCTTTTATATATTCATTTGTTATAACGGCACAGTATT GTTCCTTAATTAGTCACTCCTAAAAGTGAGATAGTTTAACAGCTATTTGATTGGAGAATTATAACTGCTCTGTCATTTTG TTAGATGCAATATATCATACTGCTCTATGACGTATTGGTGTTGTTTCATGTACTATGAGTGTATTGTTTGCCAGTATATA ATGCTATAATTTATTTATATAGATCAACTTGTTTATGGATTTTTATATTGTTGTTGCAGCCAAATCTGGTGTTGATCCTT CCAATTGCGTTGAGCTTGCGAAACATGTTAAAGATAGCTGCCCAAACCTAGTGTTCTCTGGCTTAATGACAATAGGAATG CTAGACTATACCTCAACTCCACAGAACTTTCAGGTGATAAATTCTATTCTTATATTCTGTTAGGACCCAGAAAAATGGAA GAAATAGACTGAAGTAACTGGTATTATTTACTGAGATTCTGGTGAAATCACCAAGAATCAGTGTAGCAGTAGTTACAGAT AGAAGAAGAATAAACGAAAAGATAGCAGAGGCAAATTAGAGAGTGCCTCTATTCTCTCCCAAGTCCCAAGCCTAAACCCA ATTCAAGCCTAACCTCTCTCTCACCCAAAACATGCTTATATAATCCCCAATCTCTCTCAGCATTCTCTCTCTTTCACACT CCTAGCACCCTGAAGATACTGCCACATCAGCTTGGCAGTTATCACTAGTGGGAATCAATTTTATTCCCCCTTCTACCCTT CCGAACAAATACCTTAGCAATACTAAGACTACTAATATTTGGGTTCCTATCATATTCTGAAGCATGTGGAGAGCTCCTTG AAAATCAAAATGATCTATTTCTTTGTTATTGGAACCTTTCCATTTAAGAAGTATATCTCATTTCTTGTCTTCCTATTGGT TTATTGAAGTTTGATATGCGTTTTTACAATTAGTCATTTAGTTGGTCTCATAGCACAGCTTTATGTGCCTTGATTCAAAT TCTAATTGTCTTTTTGCTAAGATTTTCTTTCTCATGAAAAATCAGGCCCTATCAAATTGCAGAACTGAAGTTTGCAAGGC ACTTGAAATGGATGAGGAGCAATGCGAACTTTCAATGGGCATGTCTGGTGATTTTGAGTTAGCGGTATGGAATAGTTTGC TAATGTTATTCAACATTAATATAATTATTTTGATAGTTGCATTTCATGTTTGCATCTGTGATTATCTCACAATTCTGGTT GCTTTTTAGCTCATAAGGGAATGAATTGACAATACCATAGGAGTAGGGTTCTTTGATACTTGCAGTGATATAGTAATAGT TTAGAGATTGTTATGATGAGACTGGCACATTTCTTTTAATTGAAGTGTTTGGCACATGTTCCTTTTACTCAAAATATACT CTAATTCTGTTACAATTATTTAATTGTATGCATGCAACTAATTGATAAATATTATTGCCTTTTCAGATTGAAATGGGTAG TACTAATGTGAGAGTTGGATCCACAATATTTGGACCAAGGGAGTATGCGAAGAAAAAAGAATAG
CDS sequence (LotjaGi6g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCCTGTGATGGCGGAGGGCGTCGCCGTCACGGCGCTGCGGTCGGTGATACTCCGAGTTCAGCAGGCGGCGGA GAGAGCTGGCTCCAAACCCGATCGGGTCCGGGTCGTTGCGGTATCCAAAACCAAACCCATTTCTATGATTCGCCAACTCT ACGACGCAGGTCACCGATGCTTCGGCGAAAATTACGTCCAAGAAATTGTCGATAAAGCCCCTCAGCTTCCACAAGACATT GATTGGCATTTCATTGGACATTTGCAAAGCAACAAAGTTAAAACACTTCTGGGTGGGGTTCCAAATCTGGCCATGGTTGA GGGCGTGGACAATCCAAAGGTGGCAAATCATCTCGACCGTATGGTTTCAACCCTTGGAAGAAATCCTCTGAAGGTCTTGG TGCAAGTAAATACCACCAAATCTGGTGTTGATCCTTCCAATTGCGTTGAGCTTGCGAAACATGTTAAAGATAGCTGCCCA AACCTAGTGTTCTCTGGCTTAATGACAATAGGAATGCTAGACTATACCTCAACTCCACAGAACTTTCAGGCCCTATCAAA TTGCAGAACTGAAGTTTGCAAGGCACTTGAAATGGATGAGGAGCAATGCGAACTTTCAATGGGCATGTCTGGTGATTTTG AGTTAGCGATTGAAATGGGTAGTACTAATGTGAGAGTTGGATCCACAATATTTGGACCAAGGGAGTATGCGAAGAAAAAA GAATAG
Protein sequence (LotjaGi6g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPVMAEGVAVTALRSVILRVQQAAERAGSKPDRVRVVAVSKTKPISMIRQLYDAGHRCFGENYVQEIVDKAPQLPQDI DWHFIGHLQSNKVKTLLGGVPNLAMVEGVDNPKVANHLDRMVSTLGRNPLKVLVQVNTTKSGVDPSNCVELAKHVKDSCP NLVFSGLMTIGMLDYTSTPQNFQALSNCRTEVCKALEMDEEQCELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYAKKK E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.4E-133 | – | |
| PIRSF | 1 | 240 | 240 | 4.9E-74 | ||
| PANTHER | 1 | 240 | 240 | 1.4E-133 | ||
| Gene3D | 7 | 241 | 235 | 3.1E-86 | ||
| SUPERFAMILY | 13 | 232 | 220 | 1.34E-68 | ||
| Hamap | 13 | 233 | 221 | 27.834 | ||
| CDD | 15 | 232 | 218 | 1.22199E-130 | – | |
| TIGRFAM | 18 | 234 | 217 | 8.7E-57 | ||
| Pfam | 22 | 234 | 213 | 1.2E-19 | ||
| ProSitePatterns | 82 | 96 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi6g1v0156000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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