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LotjaGi6g1v0157400.1

Overview

Field Value
Gene ID LotjaGi6g1v0157400
Transcript ID LotjaGi6g1v0157400.1
Lotus japonicus genome version Gifu v1.2
Description Rab3 GTPase-activating protein catalytic subunit; TAIR: AT5G55060.1 Rab3 GTPase-activating protein catalytic subunit; Swiss-Prot: sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments); TrEMBL-Plants: tr|A0A151SBI2|A0A151SBI2_CAJCA Rab3 GTPase-activating protein catalytic subunit; Found in the gene: LotjaGi6g1v0157400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43780204..43787683) extracted from Lotus japonicus Gifu genome v1.2.

AATACATCCTCTGACTTTGTTTGATGTTTTTCCGTTTCTGCATTTACTCCCTTCCTACCTAGGACTCAGCATCATCGATC AGCATGAGTATCTACCTGGTCAATGTCAATCACCACCACGTTACAAATAGTGCTATTGTACCTCTTCTTCTTCTTCTTCT GCACCTTGCACAGGAAAATGGAGGCTCACGCTACTTCATTGGTATCCAAAGCCAGAACCGCATTCCATTCCGCAGCTGCA AAAGCGGAGCGGGTTCTCATGGACTTCAAATCCGATTTAGGTGAGTCGAGTTCTTCCATTTTTCAGCTACCCTTTTGCCT TTTACGTTCATTACTCATGCATTCTTGCAATCTTGCTCGCTCGTGCTTCATTGCTTCCAAATGGAGTTCCTTTATTTTGA TTGAATGAGCATTGACCCTGGTTTTTGATAGGTGAAGATTCTGACAAGCAATCACGCCACCAGTCAGGGAGGCTGCAGGG AGATGACTCTGCTCAGAAGAATGAGATGGAGTCAAAGGTTTGAAACTTTGAACTTTGAAGAAGCATTTACTTGTTCTCTA TGGATTATGGTTTACTTGTGTTTTTTTTTTTTCAAAAACTATTTCAATTCAATTTTAAGTATTTGAATTATTGCATTTTT GGGGATGGGAATGTGGTACTGACATATTCACTTCTGGGTTCACGCCTTTTTTTGAAGACTGGTTGGTTCAAGCAGTGTAT ACTTGATTCTTGTTAAGCTAGGACTTATGTTCAAGTATTGTGTGCAGAAAAAAAAAAGACCATGTTGGAAAATTTAGCCC CACCAGAATAAGGATGTCAATGGAAAAAACTGCAATATACATGTTTGTTGGAAAAACTGAAATACATAGGGATCGAAAAG GTTTCATTCTTGTAAAAAAACCTAGAAAAAAAAATTTAGTTTTGGTTGATGTGTATTCAAAAAGTTTCGAAGAAGTACTC CATTTTTTTTATTTGAAAGATTATTTCAGTATTGCGCAGGACATATTTACAAGTACCAAACAAGAACCTGGTACATAGGT TTTAATTGTAGCTGAAACATCGAAATGGAAATTTAGATTAAGATGCGTGTTTAGACTATCTTATTCAAAAGGTATTGTAT CTCAGCCTAAAGATGATCAGTTTAAGATCACTAGATCACATTTTGTTTGTATGATGTTTATATACATATTAGGCAACATA TTTCCTGTAATGAGTGGGAATTACTTGCACAGTTGATTTTTATTTCCTTGTATTGTATCACAGCTTTTCAATGATCTGAA GCATATAAAGTGGAGACCACTACATATAGGAAAGAAGCAGGATTGGCAAGATAGAATTAAAAACTTTCGGAAAGGGAGAA AAGAAATCGAAGATACAGATAAAGTTGGAGATGCAAACATTACTGCTGATGCATTATATGATGAAGATTGGTCCATCGTC AATGTGAGAAATGATCTTAATGCCAAGGTAAGAATATTTGGTACATTGTAATTCAAGGATTTAATCTTCCAACTATGTGG AGAAGATTGAAATTTCTAAACCAGGCACTTGTCTCAGGATATTAGGAAAATCTAATAATTTATGCCAATGATGAAGATTT TCTTTTTTCAACATGGTGTCTGTCAGACCGCATCACTGTCATTACTCATAAGATATGATTACTATTAAATGCATGGTATG CTGGTGATGAATTAGTAATGCATGCTGATTATTATTAATATCTCATGGTAAACTGCCTGAGAACTCTTTCTAGTAAATTG AACACAAAATTGATTTTGTTTCAATGATTTTCTGATTCAAATATACAAATGTATTGCTTTAACGATCTGTGATAAAAAAC TTCAATTTAGGCGTCAGAAGCTATTCTTCCAGAATTGAGACGGTCAGGGCTGGCCGGAACAGAAGCAATTCCATCGGTTG AAGGCTTAACTGTGGCGACTGAAGACCCTATTCCTCCATCATCTGTCCTGAAGCAATTGGCTTTAGCTGTTGAGTAAGTT ATGCTCACATTTTTCTCACCAATTCCATGAACTGCTTAAAGATTCTTCATTGCTGAATTCTATTTCTAACTATATAGCCA GATTCTTGCAACTGAAACGCCTAATTCACACCCTCAATTACTCAATGCATTTTTTAATCTAAGAATAGTAGCTGTTGAAA TTATCTTGTCATTAAGCCAGAGTCGCGTTTGTTCTTGTTATTCAGAAAGATTTCCAGCTTAACAAATAATGGTACAACTA GCCTCTTAAAATTTTGGGCCTTTTGACTAGGGCTGGACGGAAAACACATTCAATGAAGGATTTTGTAGCTTCATCCGGAG GTTCTTCCCCTGCCTTAGAGAGGGAAGGCTTAAGTCTCTCTGCAATAAAGGCTTTAGTGTTACGTGAAAAGGAGGAAAAA CTCTCCTCTGAGTTTTGTAGCAATGAGAAAGTTGTGTATTTGATTAATTCTCTGTTTAATCCAGGTATATGAATTTTTGG TGGCTTGCTAATGATGTTAATTATAGGAGTGAAACTTTTTTTGTTTCTATTTTTTTAGCCTCTTTTGTGGTGATCTTCTG CATCCCTGGTAATATGTGCAAGATATTTTTGCAGAGGGAGAGTTCCTTAGAAGGAAGATCAACTCTGACCCAGAAGAAAT TGCTTTAACATCTTTGCCAAGAGATATTCACAGTGCTCCTCCTGAAAGCCTAGTTGTTAAACTGGCTGAAGTAATTGGAA ACTTCAAGACTGTTCGAAAAATGGCTCTTTTTTGGTGCAGTGTTGTTACTGAAGTATGTCTAACTCAATAAGAACTTATA TTTTTAGTATTACATTACCATTTCATTAAGAACCTAGAATTTTATTTATAGGATTTACTCTCTCAGTCCTTTTCTAGATT CTAAAATATACAAGCTATTTGATTTTTCTCAAGTAATTGTTAGCTTGATACATATTGTGAAAGATATAATATAAAAATCA TTCATGTACCTTCACTACTTAAACTTTTGGAATGCTCGGTTCATGACATGGTATCAGAGCCTCTATAGTCAAGCAGTGTA AAGTTAAATCCTTGTGACCTCCATTCTTGTAAGAAAAAGTTGTTTCCAAGCACAAGAAGCTGGGCCTGTGCATTGTCTAA ACCTTGTTGCATGAAAGGGTGTGTTAGATATAATATTAAAGTCATTCCCTCAAAACCAACTGTCAAGAAGTTAACCTACG TTTTTGATTTCACATCTAATTGTTCATAAAAAGAAAGAAATCCTATGTGAACTTCTGTTTTAGAATTAATAACTTGAAGT GTCGTAGGATACAATAATGTCACTTCTTTATGTTCTTTCTTAATTACCATCTGAGAAAGACTGAAAGAGTGTATTGAATA TTTTTACTTGTGCAGCTGAGAAAACTTTGGTCTGAAGACAAACATTTACCTGGAGTCCCCCCAGATGATGTTCCAGATCT GAAGTCATGCCTTCTGTATCAACAGTTTCAAGTAATTAATTGCTGCATCTCTCGGAAAAGGCGCCATATTATTGCCACCG AAGCCGTAGACTCTATGGTGATGGAAGCCAATTCAAATACATTAAAATCAGGAAACCACAGTGACAGAACTTCTGCTACT CCTGTATTATATGCTAGGATCAGTACTGGAGAGCTTGTTCTTCGACTTGGTGCTCTTTGCCCATCTGGAGATCTAACATT ATTGGAAACCGGCGAGCCTATGTACACTCCTATCACGCAGGTTTGGTCAATATTTGTACTATCTAGTCAATACTTAAACT TGCTCTAGTACTTCTTGATATTTATGTCCATTTCATGTAGGAGGGAGCCTTGCTTACAGAAGATTTGATCAAAGAGACAG AGGAGTTTGTGCTTCGGACAGGGAGGTCTGTACACCAACTGAGGTTCATTTGATCCTGATGATTATTTTGCTTATGTGTG TATTTTGAGTACACACCAATTGTCTGTTTTTTAATCTTAAACTAAAAGGGTTTGAGCTTTTAATTAAATATCTGGTTTAT TTTGCTTCTTGGGCTTTCACTGCTTGATAGATGCATTGATGTAAGTCTTTTGTAATTTATTGGCAAGATCTGAACTCTTG ACCTATATACCCATATCTTAACATGCCTTGAATCAAGGCCTAGATTGCAGTTATTATCTATTGGCTAAAATTTCTATTTG TGTTGGAGGCAGTGATTGATTTGGAGTATCTACTCAGGATATAGGTCATGAATAATTCTGTAGTTCCGTTTTCTAAACTG TGTTTTTCATTTTCTCTTTTATTGAACCATATTAAGTTATTAACCCTCTTCTTGAAATAACATTATAATACTGCTGCTCT CATGCTTCCTTTTAATGTGAATTCCAAAATAATCTTGGCTTGAAATGAATTATGAGTTCAAACTTCCATGTAAAGAGCAT GACGTGTTTTTATCAGCAAGTGTTGACCATATGTTGAATTGTTGATTGAATAATTATAATGTTTTGATAAGTGTTGCTGG AGACGTATTAAGACATATTTAGAAATAAGTTGTCACTAGTTTGAAAATGATTAGACAATTTAATTGTTTTGGAGATATAA TAAATATGTACAAAAAAACTACATTTTACCTTTTGTGAAGGAGAGCATTTTATGATAATGTATCAGGGTTTTCACTTTGA ATATAGATCTTGTTTTCATACCTTAAGAAATGTAAAGCTTGTCATTTTGATGTATTGCTGGTTACCTTCTATGGTCAGTG TTGGTGCTGGGTGCTCTCAGCTTCTCTCTGATATGCAAGCTTTCAAGGTCAGATTCTCCCTTGATGAGAACTTATCTTGC TGATGTTCTTAGTGCTTTTGGATTATGTCAAGTGTAGTGATGCTCCATCTGAGTTAACTGTGTTTATGATCATGTTTAAG GCTGCAAATCCAGGTTGTATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGACTGAAAATGAGGCAAGTAC TGAGGAAACTGAGTGTTCTGATGGTGGTGAGTCATTGCCTACCAAAGGTCAGCTAAGTCAGCGAATGCAGAAAGAAGGTG TGCTAATAGTCTTGCTCATTATTATCGTTAGTTTGAGTATACCTCACAATGCATTTCAGCTAGATTAAAGTTTACTTAAC TAATAAGCTTGTTTGACCAAAATAAAGGTATTCGGTAAACTATTTAATATGATACTCATTATAAATAAATATTATACATA TATTAATGTGTGAATAAAGTAATTTTAAATATAATTTTTGCATTTTTCAACTGCTAATTTTACCAAATTACTTCTAACTT AATCAGTTAGCTTAGCACCTTTCAGTTAACAGTTCTCAATTAGAAGTTAAATTTTCAGATTTTAGCTAACTTATAGCTAG TTTTGCTAAATATCCATGTGTGTTAGGCCGGCTGCATATGGTAAAATTTGGATTTATTTTGACATGACCACTGTTAGGGC TGCATCATGTTCTGTCCATTCAGTGGAAGCACACATGAATGTTTTTTATTTCTAGCACACTCCTACACAAGAGACCTTTG AGGTTTGTGCTTGAACATGGACTATGCTCATAGGCTCTCCCTTCTGGTGCTGAAATTTAACTTTTACTTAGAAGAATGGT GGCAACGAAATTCAAATTTTAGACCACATGGTTAGAGGCTCTGATTTGTGATCCCGATACCAATAGCTTAAAAATCTGTT GGAAGCACGCGTGGTTTTATTTCTAACATGTCTTTTTAATGTCATAAAAACCTCTTAATTTTGTTGCATGTTGATGGTAG GTAATTTGTGGCGTGAATTGTGGGAAACATCTAAACCAGTACCAGCTGCAAAACAAACACCTCTCTTTGATGAGGATTTG GTGGTGTAAGTCTAATTAGCCTTTTTTTAAACTTGGATTTCCCCTTGAAGCCATCTCACTTGAAAGCCATTTTACATTCA TCTTAGGAAGGGCATCCTTGATGCACTTGAGGAAATCCAGCCTTCTGAACTCTTTGGACAGCTCTTTGTTTCTCTTGTAA GTTCTCTTTTTTGTTTTCTTTTTATCTAACGGATGTTGCTTCTGTCATGTTTAAATGACAAGTTATTGTTATCTGTTATC ATCTTCAATTGATGATCTTTTGAAGCATTAATATCATGGCCAACTGTTAATGCTATTTCTGGACATTAGAAGCATGTTGT GTTTTGAAATGTAAACTCATCAGTGATTAATGCTCTTTTTTGTTGACAAAAGTAACCATCATGACTTCTAATTACTACCA CTGTTTTTCCTAAAAAAATGTTTTAACATTTTTACTCATTTGTTGTTATAAAGAATGGGGAAACTAACAAGAAAGAGTAC CTTTAAGACATATATCATCTGCCTAATATACCCGTGAAGTAGATGAAAGGGAATAGGAGTGTTCTTCCTGTTACATAGAA CAATATAGCTTCTGCCAATGATATAGTCTCCACTAAAACCAATTTACTGTTGATTAATACAATGTCATATACCTATACAA TGTTAAATAGAACATTGTTGCTGATTTAAATAGGTATTGCTTCATGCCCTACGGACTTCAAGACCATTTATATAGTATAT ATGTCAAGCAATTAAATGAGAAATCATTTTGATTTATGATCCAGCAGTGGTTTATAGTTTCTTGATATAAAGTTCAGCTC GTGCCTTCTTGAATTAGTTGACTAGATTTTAGTTGTACCTGTGATCAATGATTTTTACCATTTCCATGACTTTCTGATAG AAATTTTGTGTTAATTATACAGCTTGGTTTAGGATTTATAATTGCCGAACCTGTGCTGTCTGGTAATGTTGACTTCTCCA AGATGTTTAATGACTACAAGGAGTATGTAGCAGCCACTTGTCAAAGCAGCAGATTCAATGAGGAAGTTGATGAACTTGTT AAGGTATGGTAATAATATACTAAAGCGTCTAAATCCTTCTGAAGCGTCTCTTGTATTGATTATTGACTCTCACCCTGTGT TGGGTAGGTATATGAAATGGTGGAGACAATGTTGCTGAATCCTAAGGAGGCACTGAAGATGATGAAGCAAACAGAAGAAT CAACTGTGACTACTGGTGAGCCGACACGCAGGTTCAAGAAGCTTAGTCAAATCTTTGGTGGCAAAGATAAACTGCTGACA AGGCCTGTCTCGCAAGATGTAAACAAAGAAGAAAAATGCATTCGACAATCTTTTTCAAGTTTCTTTGAGAGGAACTCATC TTTGCTTTCAAAGAAGTGTCCCAAACCTGGATACCAGTCCCCTGTTGAGACACTTCCCTCTCCAGAAAGCGATTGGACGT TTGTTTAAACTTTAAAACAAACTATAGCTTCACCTGTGTAGATGAACAACATTTTTTCTTTATATTTTCTTATTTCCTAA TGTATTTAACATCATATAAATGATATAAATGATATTTAGGTGATTTTTATGTTGTTGAAAAGATAGAACAATTGTTCACA ACTCTTATGAACATTCCAAGAGTCAACTTAGATGTTTACT 

CDS sequence (LotjaGi6g1v0157400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAATCACCACCACGTTACAAATAGTGCTATTGTACCTCTTCTTCTTCTTCTTCTGCACCTTGCACAGGAAAATGGA GGCTCACGCTACTTCATTGGTATCCAAAGCCAGAACCGCATTCCATTCCGCAGCTGCAAAAGCGGAGCGGGTTCTCATGG ACTTCAAATCCGATTTAGGTGAAGATTCTGACAAGCAATCACGCCACCAGTCAGGGAGGCTGCAGGGAGATGACTCTGCT CAGAAGAATGAGATGGAGTCAAAGCTTTTCAATGATCTGAAGCATATAAAGTGGAGACCACTACATATAGGAAAGAAGCA GGATTGGCAAGATAGAATTAAAAACTTTCGGAAAGGGAGAAAAGAAATCGAAGATACAGATAAAGTTGGAGATGCAAACA TTACTGCTGATGCATTATATGATGAAGATTGGTCCATCGTCAATGTGAGAAATGATCTTAATGCCAAGGCGTCAGAAGCT ATTCTTCCAGAATTGAGACGGTCAGGGCTGGCCGGAACAGAAGCAATTCCATCGGTTGAAGGCTTAACTGTGGCGACTGA AGACCCTATTCCTCCATCATCTGTCCTGAAGCAATTGGCTTTAGCTGTTGAGGCTGGACGGAAAACACATTCAATGAAGG ATTTTGTAGCTTCATCCGGAGGTTCTTCCCCTGCCTTAGAGAGGGAAGGCTTAAGTCTCTCTGCAATAAAGGCTTTAGTG TTACGTGAAAAGGAGGAAAAACTCTCCTCTGAGTTTTGTAGCAATGAGAAAGTTGTGTATTTGATTAATTCTCTGTTTAA TCCAGAGGGAGAGTTCCTTAGAAGGAAGATCAACTCTGACCCAGAAGAAATTGCTTTAACATCTTTGCCAAGAGATATTC ACAGTGCTCCTCCTGAAAGCCTAGTTGTTAAACTGGCTGAAGTAATTGGAAACTTCAAGACTGTTCGAAAAATGGCTCTT TTTTGGTGCAGTGTTGTTACTGAACTGAGAAAACTTTGGTCTGAAGACAAACATTTACCTGGAGTCCCCCCAGATGATGT TCCAGATCTGAAGTCATGCCTTCTGTATCAACAGTTTCAAGTAATTAATTGCTGCATCTCTCGGAAAAGGCGCCATATTA TTGCCACCGAAGCCGTAGACTCTATGGTGATGGAAGCCAATTCAAATACATTAAAATCAGGAAACCACAGTGACAGAACT TCTGCTACTCCTGTATTATATGCTAGGATCAGTACTGGAGAGCTTGTTCTTCGACTTGGTGCTCTTTGCCCATCTGGAGA TCTAACATTATTGGAAACCGGCGAGCCTATGTACACTCCTATCACGCAGGAGGGAGCCTTGCTTACAGAAGATTTGATCA AAGAGACAGAGGAGTTTGTGCTTCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAGCTTCTCTCTGATATGCAAGCTTTC AAGGCTGCAAATCCAGGTTGTATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGACTGAAAATGAGGCAAG TACTGAGGAAACTGAGTGTTCTGATGGTGGTGAGTCATTGCCTACCAAAGGTCAGCTAAGTCAGCGAATGCAGAAAGAAG GTAATTTGTGGCGTGAATTGTGGGAAACATCTAAACCAGTACCAGCTGCAAAACAAACACCTCTCTTTGATGAGGATTTG GTGGTGAAGGGCATCCTTGATGCACTTGAGGAAATCCAGCCTTCTGAACTCTTTGGACAGCTCTTTGTTTCTCTTCTTGG TTTAGGATTTATAATTGCCGAACCTGTGCTGTCTGGTAATGTTGACTTCTCCAAGATGTTTAATGACTACAAGGAGTATG TAGCAGCCACTTGTCAAAGCAGCAGATTCAATGAGGAAGTTGATGAACTTGTTAAGGTATATGAAATGGTGGAGACAATG TTGCTGAATCCTAAGGAGGCACTGAAGATGATGAAGCAAACAGAAGAATCAACTGTGACTACTGGTGAGCCGACACGCAG GTTCAAGAAGCTTAGTCAAATCTTTGGTGGCAAAGATAAACTGCTGACAAGGCCTGTCTCGCAAGATGTAAACAAAGAAG AAAAATGCATTCGACAATCTTTTTCAAGTTTCTTTGAGAGGAACTCATCTTTGCTTTCAAAGAAGTGTCCCAAACCTGGA TACCAGTCCCCTGTTGAGACACTTCCCTCTCCAGAAAGCGATTGGACGTTTGTTTAA 

Protein sequence (LotjaGi6g1v0157400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSITTTLQIVLLYLFFFFFCTLHRKMEAHATSLVSKARTAFHSAAAKAERVLMDFKSDLGEDSDKQSRHQSGRLQGDDSA QKNEMESKLFNDLKHIKWRPLHIGKKQDWQDRIKNFRKGRKEIEDTDKVGDANITADALYDEDWSIVNVRNDLNAKASEA ILPELRRSGLAGTEAIPSVEGLTVATEDPIPPSSVLKQLALAVEAGRKTHSMKDFVASSGGSSPALEREGLSLSAIKALV LREKEEKLSSEFCSNEKVVYLINSLFNPEGEFLRRKINSDPEEIALTSLPRDIHSAPPESLVVKLAEVIGNFKTVRKMAL FWCSVVTELRKLWSEDKHLPGVPPDDVPDLKSCLLYQQFQVINCCISRKRRHIIATEAVDSMVMEANSNTLKSGNHSDRT SATPVLYARISTGELVLRLGALCPSGDLTLLETGEPMYTPITQEGALLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAF KAANPGCILEDFVRWYSPPDWTENEASTEETECSDGGESLPTKGQLSQRMQKEGNLWRELWETSKPVPAAKQTPLFDEDL VVKGILDALEEIQPSELFGQLFVSLLGLGFIIAEPVLSGNVDFSKMFNDYKEYVAATCQSSRFNEEVDELVKVYEMVETM LLNPKEALKMMKQTEESTVTTGEPTRRFKKLSQIFGGKDKLLTRPVSQDVNKEEKCIRQSFSSFFERNSSLLSKKCPKPG YQSPVETLPSPESDWTFV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 6 6 -
Phobius 1 30 30 -
Phobius 7 22 16 -
Phobius 23 30 8 -
PANTHER 26 737 712 0.0
PANTHER 26 737 712 0.0
Phobius 31 576 546 -
MobiDBLite 59 81 23 -
Pfam 418 570 153 5.4E-54
MobiDBLite 501 528 28 -
MobiDBLite 513 528 16 -
Phobius 577 597 21 -
Phobius 598 738 141 -
MobiDBLite 716 738 23 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activator activity Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0157400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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